data_3A3E
#
_model_server_result.job_id            EuLqGtxnnW0rNXUhnymRvA 
_model_server_result.datetime_utc      '2024-11-02 14:31:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3a3e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1}' 
#
_entry.id    3A3E 
#
_exptl.entry_id    3A3E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              491.561 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R,4S)-2-[(1R)-1-({(2R)-2-[(4-ethyl-2,3-dioxopiperazin-1-yl)amino]-2-phenylacetyl}amino)-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.79 
_cell.angle_gamma         90 
_cell.entry_id            3A3E 
_cell.length_a            64.898 
_cell.length_b            92.823 
_cell.length_c            104.173 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3A3E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 140 A CYS 166 1_555 A SG CYS 154 A CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf2 A SG CYS 196 A CYS 222 1_555 A SG CYS 213 A CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
disulf ? disulf3 B SG CYS 196 B CYS 222 1_555 B SG CYS 213 B CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
covale ? covale1 C C15 CMV . A CMV 1 1_555 A OG SER 43 A SER 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? 
covale ? covale2 D C15 CMV . B CMV 1 1_555 B OG SER 43 B SER 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
#
_chem_comp.formula           'C22 H29 N5 O6 S' 
_chem_comp.formula_weight    491.561 
_chem_comp.id                CMV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R,4S)-2-[(1R)-1-({(2R)-2-[(4-ethyl-2,3-dioxopiperazin-1-yl)amino]-2-phenylacetyl}amino)-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C6 C1 CMV sing 70 n n 
C1 H1 CMV sing 71 n n 
C1 H1A CMV sing 72 n n 
C1 H1B CMV sing 73 n n 
O2 C2 CMV doub 74 n n 
C12 C2 CMV sing 75 n n 
C2 O1 CMV sing 76 n n 
C12 C6 CMV sing 77 n n 
S1 C6 CMV sing 78 n n 
C6 C16 CMV sing 79 n n 
N3 C12 CMV sing 80 n n 
C12 H12 CMV sing 81 n n 
C14 C13 CMV sing 82 n n 
N3 C13 CMV sing 83 n n 
C13 S1 CMV sing 84 n n 
C13 H13 CMV sing 85 n n 
C15 C14 CMV sing 86 n n 
N1 C14 CMV sing 87 n n 
C14 H14 CMV sing 88 n n 
O4 C15 CMV doub 89 n n 
C15 H15 CMV sing 90 n n 
C16 H16 CMV sing 91 n n 
C16 H16A CMV sing 92 n n 
C16 H16B CMV sing 93 n n 
O1 HO1 CMV sing 94 n n 
N3 HN3 CMV sing 95 n n 
N1 CAL CMV sing 96 n n 
N1 HN1 CMV sing 97 n n 
CAM CAL CMV sing 98 n n 
CAL OAV CMV doub 99 n n 
NAN CAM CMV sing 100 n n 
CAM CAW CMV sing 101 n n 
CAM HAM CMV sing 102 n n 
CBC CAW CMV doub 103 n y 
CAW CBD CMV sing 104 n y 
CBD CBG CMV doub 105 n y 
CBD HBD CMV sing 106 n n 
CBH CBG CMV sing 107 n y 
CBG HBG CMV sing 108 n n 
CBF CBH CMV doub 109 n y 
CBH HBH CMV sing 110 n n 
CBC CBF CMV sing 111 n y 
CBF HBF CMV sing 112 n n 
CBC HBC CMV sing 113 n n 
NAN NAG CMV sing 114 n n 
NAN HNAN CMV sing 115 n n 
CAE NAG CMV sing 116 n n 
NAG CAQ CMV sing 117 n n 
OAS CAE CMV doub 118 n n 
CAI CAE CMV sing 119 n n 
CAU CAQ CMV sing 120 n n 
CAQ HAQ CMV sing 121 n n 
CAQ HAQA CMV sing 122 n n 
NAO CAU CMV sing 123 n n 
CAU HAU CMV sing 124 n n 
CAU HAUA CMV sing 125 n n 
CAI NAO CMV sing 126 n n 
CBB NAO CMV sing 127 n n 
OAT CAI CMV doub 128 n n 
CBE CBB CMV sing 129 n n 
CBB HBB CMV sing 130 n n 
CBB HBBA CMV sing 131 n n 
CBE HBE CMV sing 132 n n 
CBE HBEA CMV sing 133 n n 
CBE HBEB CMV sing 134 n n 
#
_atom_sites.entry_id                     3A3E 
_atom_sites.fract_transf_matrix[1][1]    0.015409 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004944 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010773 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010081 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CMV A 1 1 1 CMV CM3 . 
D 2 CMV B 1 1 1 CMV CM3 . 
E 3 HOH A 1 2 2 HOH HOH . 
E 3 HOH A 2 3 3 HOH HOH . 
E 3 HOH A 3 4 4 HOH HOH . 
E 3 HOH A 4 5 5 HOH HOH . 
E 3 HOH A 5 7 7 HOH HOH . 
E 3 HOH A 6 8 8 HOH HOH . 
E 3 HOH A 7 9 9 HOH HOH . 
E 3 HOH A 8 10 10 HOH HOH . 
E 3 HOH A 9 11 11 HOH HOH . 
E 3 HOH A 10 13 13 HOH HOH . 
E 3 HOH A 11 15 15 HOH HOH . 
E 3 HOH A 12 16 16 HOH HOH . 
E 3 HOH A 13 17 17 HOH HOH . 
E 3 HOH A 14 18 18 HOH HOH . 
E 3 HOH A 15 19 19 HOH HOH . 
E 3 HOH A 16 20 20 HOH HOH . 
E 3 HOH A 17 21 21 HOH HOH . 
E 3 HOH A 18 22 22 HOH HOH . 
E 3 HOH A 19 26 26 HOH HOH . 
E 3 HOH A 20 480 1 HOH HOH . 
E 3 HOH A 21 481 28 HOH HOH . 
E 3 HOH A 22 482 30 HOH HOH . 
E 3 HOH A 23 483 31 HOH HOH . 
E 3 HOH A 24 484 32 HOH HOH . 
E 3 HOH A 25 485 33 HOH HOH . 
E 3 HOH A 26 486 34 HOH HOH . 
E 3 HOH A 27 487 35 HOH HOH . 
E 3 HOH A 28 488 36 HOH HOH . 
E 3 HOH A 29 489 37 HOH HOH . 
E 3 HOH A 30 490 38 HOH HOH . 
E 3 HOH A 31 491 41 HOH HOH . 
E 3 HOH A 32 492 42 HOH HOH . 
E 3 HOH A 33 493 44 HOH HOH . 
E 3 HOH A 34 494 45 HOH HOH . 
E 3 HOH A 35 495 47 HOH HOH . 
E 3 HOH A 36 496 49 HOH HOH . 
E 3 HOH A 37 497 50 HOH HOH . 
E 3 HOH A 38 498 51 HOH HOH . 
E 3 HOH A 39 499 52 HOH HOH . 
E 3 HOH A 40 500 53 HOH HOH . 
E 3 HOH A 41 501 54 HOH HOH . 
E 3 HOH A 42 502 57 HOH HOH . 
E 3 HOH A 43 503 58 HOH HOH . 
E 3 HOH A 44 504 59 HOH HOH . 
E 3 HOH A 45 505 61 HOH HOH . 
E 3 HOH A 46 506 62 HOH HOH . 
E 3 HOH A 47 507 63 HOH HOH . 
E 3 HOH A 48 508 66 HOH HOH . 
E 3 HOH A 49 509 67 HOH HOH . 
E 3 HOH A 50 510 70 HOH HOH . 
E 3 HOH A 51 511 72 HOH HOH . 
E 3 HOH A 52 512 74 HOH HOH . 
E 3 HOH A 53 513 76 HOH HOH . 
E 3 HOH A 54 514 78 HOH HOH . 
E 3 HOH A 55 515 79 HOH HOH . 
E 3 HOH A 56 516 80 HOH HOH . 
E 3 HOH A 57 517 82 HOH HOH . 
E 3 HOH A 58 518 84 HOH HOH . 
E 3 HOH A 59 519 85 HOH HOH . 
E 3 HOH A 60 520 86 HOH HOH . 
F 3 HOH B 1 6 6 HOH HOH . 
F 3 HOH B 2 12 12 HOH HOH . 
F 3 HOH B 3 14 14 HOH HOH . 
F 3 HOH B 4 23 23 HOH HOH . 
F 3 HOH B 5 24 24 HOH HOH . 
F 3 HOH B 6 25 25 HOH HOH . 
F 3 HOH B 7 480 27 HOH HOH . 
F 3 HOH B 8 481 29 HOH HOH . 
F 3 HOH B 9 482 39 HOH HOH . 
F 3 HOH B 10 483 40 HOH HOH . 
F 3 HOH B 11 484 43 HOH HOH . 
F 3 HOH B 12 485 46 HOH HOH . 
F 3 HOH B 13 486 48 HOH HOH . 
F 3 HOH B 14 487 55 HOH HOH . 
F 3 HOH B 15 488 56 HOH HOH . 
F 3 HOH B 16 489 60 HOH HOH . 
F 3 HOH B 17 490 64 HOH HOH . 
F 3 HOH B 18 491 65 HOH HOH . 
F 3 HOH B 19 492 68 HOH HOH . 
F 3 HOH B 20 493 69 HOH HOH . 
F 3 HOH B 21 494 71 HOH HOH . 
F 3 HOH B 22 495 73 HOH HOH . 
F 3 HOH B 23 496 75 HOH HOH . 
F 3 HOH B 24 497 77 HOH HOH . 
F 3 HOH B 25 498 81 HOH HOH . 
F 3 HOH B 26 499 83 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CMV . . . D 2 -15.549 3.898 2.768 1 33.36 ? C1 CMV 1 B 1 
HETATM 2 C C2 CMV . . . D 2 -18.386 3.991 3.259 1 32 ? C2 CMV 1 B 1 
HETATM 3 C C6 CMV . . . D 2 -16.044 3.179 4.02 1 33.33 ? C6 CMV 1 B 1 
HETATM 4 C C12 CMV . . . D 2 -17.456 3.696 4.384 1 30.64 ? C12 CMV 1 B 1 
HETATM 5 C C13 CMV . . . D 2 -16.13 4.921 6.017 1 29.77 ? C13 CMV 1 B 1 
HETATM 6 C C14 CMV . . . D 2 -16.902 4.69 7.347 1 30.27 ? C14 CMV 1 B 1 
HETATM 7 C C15 CMV . . . D 2 -18.291 5.326 7.229 1 30.18 ? C15 CMV 1 B 1 
HETATM 8 C C16 CMV . . . D 2 -15.982 1.699 3.714 1 34.45 ? C16 CMV 1 B 1 
HETATM 9 O O1 CMV . . . D 2 -19.174 3.087 2.885 1 28.67 ? O1 CMV 1 B 1 
HETATM 10 O O2 CMV . . . D 2 -18.356 5.181 2.794 1 32.38 ? O2 CMV 1 B 1 
HETATM 11 N N3 CMV . . . D 2 -17.228 4.963 5.063 1 25.82 ? N3 CMV 1 B 1 
HETATM 12 S S1 CMV . . . D 2 -15.151 3.637 5.394 1 36.68 ? S1 CMV 1 B 1 
HETATM 13 O O4 CMV . . . D 2 -19.348 4.679 7.088 1 29.46 ? O4 CMV 1 B 1 
HETATM 14 N N1 CMV . . . D 2 -17.048 3.229 7.622 1 30.19 ? N1 CMV 1 B 1 
HETATM 15 C CAL CMV . . . D 2 -16.117 2.636 8.375 1 31.93 ? CAL CMV 1 B 1 
HETATM 16 O OAV CMV . . . D 2 -15.209 3.312 8.845 1 34.9 ? OAV CMV 1 B 1 
HETATM 17 C CAM CMV . . . D 2 -16.115 1.188 8.775 1 34.19 ? CAM CMV 1 B 1 
HETATM 18 C CAW CMV . . . D 2 -15.645 0.242 7.726 1 32.85 ? CAW CMV 1 B 1 
HETATM 19 C CBD CMV . . . D 2 -16.546 -0.641 7.108 1 32.78 ? CBD CMV 1 B 1 
HETATM 20 C CBG CMV . . . D 2 -16.148 -1.545 6.119 1 32.51 ? CBG CMV 1 B 1 
HETATM 21 C CBH CMV . . . D 2 -14.8 -1.541 5.717 1 35.2 ? CBH CMV 1 B 1 
HETATM 22 C CBF CMV . . . D 2 -13.88 -0.66 6.326 1 32.25 ? CBF CMV 1 B 1 
HETATM 23 C CBC CMV . . . D 2 -14.288 0.228 7.335 1 32.88 ? CBC CMV 1 B 1 
HETATM 24 N NAN CMV . . . D 2 -15.127 1.27 9.825 1 42.31 ? NAN CMV 1 B 1 
HETATM 25 N NAG CMV . . . D 2 -15.096 0.664 10.899 1 47.99 ? NAG CMV 1 B 1 
HETATM 26 C CAE CMV . . . D 2 -14.023 0.97 11.663 1 51.03 ? CAE CMV 1 B 1 
HETATM 27 O OAS CMV . . . D 2 -13.254 1.932 11.514 1 50.21 ? OAS CMV 1 B 1 
HETATM 28 C CAQ CMV . . . D 2 -16.193 -0.271 11.159 1 50.24 ? CAQ CMV 1 B 1 
HETATM 29 C CAU CMV . . . D 2 -15.781 -1.182 12.32 1 54.58 ? CAU CMV 1 B 1 
HETATM 30 N NAO CMV . . . D 2 -14.81 -0.494 13.195 1 55.71 ? NAO CMV 1 B 1 
HETATM 31 C CAI CMV . . . D 2 -13.757 0.197 12.686 1 54.9 ? CAI CMV 1 B 1 
HETATM 32 O OAT CMV . . . D 2 -12.584 0.206 13.082 1 57.77 ? OAT CMV 1 B 1 
HETATM 33 C CBB CMV . . . D 2 -15.075 -0.644 14.64 1 54.16 ? CBB CMV 1 B 1 
HETATM 34 C CBE CMV . . . D 2 -13.862 -0.308 15.505 1 53.5 ? CBE CMV 1 B 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           214 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           34 
#