data_3A3Y # _model_server_result.job_id nhfWRb0ORyZ7A0gFAcBqhg _model_server_result.datetime_utc '2024-11-08 13:24:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3a3y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":3001}' # _entry.id 3A3Y # _exptl.entry_id 3A3Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.63 _cell.angle_gamma 90 _cell.entry_id 3A3Y _cell.length_a 222.884 _cell.length_b 50.72 _cell.length_c 163.342 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3A3Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 127 B CYS 127 1_555 B SG CYS 150 B CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 B SG CYS 160 B CYS 160 1_555 B SG CYS 176 B CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 B SG CYS 215 B CYS 215 1_555 B SG CYS 278 B CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A OD1 ASP 381 A ASP 376 1_555 E MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc2 A O THR 383 A THR 378 1_555 E MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc3 A OD2 ASP 722 A ASP 717 1_555 E MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc4 A O ALA 733 A ALA 728 1_555 H K K . A K 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? metalc ? metalc5 A O THR 784 A THR 779 1_555 F K K . A K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.913 ? metalc ? metalc6 E MG MG . A MG 2002 1_555 N O HOH . A HOH 5024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc7 E MG MG . A MG 2002 1_555 N O HOH . A HOH 5026 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc8 F K K . A K 2003 1_555 N O HOH . A HOH 5006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3A3Y _atom_sites.fract_transf_matrix[1][1] 0.004487 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001171 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019716 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006327 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MF4 A 1 2001 2001 MF4 MF4 . E 5 MG A 1 2002 2002 MG MG . F 6 K A 1 2003 2003 K K . G 6 K A 1 2004 2004 K K . H 6 K A 1 2005 2005 K K . I 7 OBN A 1 6000 6000 OBN OBN . J 8 CLR B 1 3001 3001 CLR CLR . K 9 NAG B 1 4001 4001 NAG NAG . L 9 NAG B 1 4002 4002 NAG NAG . M 9 NAG B 1 4021 4021 NAG NAG . N 10 HOH A 1 5001 5001 HOH HOH . N 10 HOH A 2 5002 5002 HOH HOH . N 10 HOH A 3 5003 5003 HOH HOH . N 10 HOH A 4 5004 5004 HOH HOH . N 10 HOH A 5 5005 5005 HOH HOH . N 10 HOH A 6 5006 5006 HOH HOH . N 10 HOH A 7 5007 5007 HOH HOH . N 10 HOH A 8 5008 5008 HOH HOH . N 10 HOH A 9 5009 5009 HOH HOH . N 10 HOH A 10 5010 5010 HOH HOH . N 10 HOH A 11 5011 5011 HOH HOH . N 10 HOH A 12 5012 5012 HOH HOH . N 10 HOH A 13 5013 5013 HOH HOH . N 10 HOH A 14 5014 5014 HOH HOH . N 10 HOH A 15 5015 5015 HOH HOH . N 10 HOH A 16 5016 5016 HOH HOH . N 10 HOH A 17 5017 5017 HOH HOH . N 10 HOH A 18 5018 5018 HOH HOH . N 10 HOH A 19 5019 5019 HOH HOH . N 10 HOH A 20 5020 5020 HOH HOH . N 10 HOH A 21 5021 5021 HOH HOH . N 10 HOH A 22 5022 5022 HOH HOH . N 10 HOH A 23 5023 5023 HOH HOH . N 10 HOH A 24 5024 5024 HOH HOH . N 10 HOH A 25 5025 5025 HOH HOH . N 10 HOH A 26 5026 5026 HOH HOH . N 10 HOH A 27 5027 5027 HOH HOH . N 10 HOH A 28 5028 5028 HOH HOH . N 10 HOH A 29 5029 5029 HOH HOH . N 10 HOH A 30 5030 5030 HOH HOH . N 10 HOH A 31 5031 5031 HOH HOH . N 10 HOH A 32 5032 5032 HOH HOH . N 10 HOH A 33 5033 5033 HOH HOH . N 10 HOH A 34 5034 5034 HOH HOH . N 10 HOH A 35 5035 5035 HOH HOH . N 10 HOH A 36 5036 5036 HOH HOH . N 10 HOH A 37 5037 5037 HOH HOH . N 10 HOH A 38 5038 5038 HOH HOH . N 10 HOH A 39 5039 5039 HOH HOH . N 10 HOH A 40 5040 5040 HOH HOH . N 10 HOH A 41 5041 5041 HOH HOH . N 10 HOH A 42 5042 5042 HOH HOH . N 10 HOH A 43 5043 5043 HOH HOH . N 10 HOH A 44 5044 5044 HOH HOH . N 10 HOH A 45 5045 5045 HOH HOH . N 10 HOH A 46 5046 5046 HOH HOH . N 10 HOH A 47 5047 5047 HOH HOH . N 10 HOH A 48 5048 5048 HOH HOH . N 10 HOH A 49 5049 5049 HOH HOH . N 10 HOH A 50 5050 5050 HOH HOH . N 10 HOH A 51 5051 5051 HOH HOH . N 10 HOH A 52 5052 5052 HOH HOH . N 10 HOH A 53 5053 5053 HOH HOH . N 10 HOH A 54 5054 5054 HOH HOH . N 10 HOH A 55 5055 5055 HOH HOH . N 10 HOH A 56 5056 5056 HOH HOH . N 10 HOH A 57 5057 5057 HOH HOH . N 10 HOH A 58 5058 5058 HOH HOH . N 10 HOH A 59 5059 5059 HOH HOH . N 10 HOH A 60 5060 5060 HOH HOH . N 10 HOH A 61 5061 5061 HOH HOH . N 10 HOH A 62 5062 5062 HOH HOH . N 10 HOH A 63 5063 5063 HOH HOH . N 10 HOH A 64 5064 5064 HOH HOH . N 10 HOH A 65 5065 5065 HOH HOH . O 10 HOH G 1 5000 5000 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . J 8 136.776 -1.762 15.521 1 89.45 ? C1 CLR 3001 B 1 HETATM 2 C C2 CLR . . . J 8 136.72 -1.894 17.051 1 89.74 ? C2 CLR 3001 B 1 HETATM 3 C C3 CLR . . . J 8 136.634 -0.554 17.79 1 89.85 ? C3 CLR 3001 B 1 HETATM 4 C C4 CLR . . . J 8 135.437 0.236 17.271 1 89.61 ? C4 CLR 3001 B 1 HETATM 5 C C5 CLR . . . J 8 135.635 0.406 15.781 1 89.38 ? C5 CLR 3001 B 1 HETATM 6 C C6 CLR . . . J 8 135.768 1.654 15.292 1 89.29 ? C6 CLR 3001 B 1 HETATM 7 C C7 CLR . . . J 8 135.415 2.028 13.865 1 89.03 ? C7 CLR 3001 B 1 HETATM 8 C C8 CLR . . . J 8 135.5 0.842 12.906 1 88.89 ? C8 CLR 3001 B 1 HETATM 9 C C9 CLR . . . J 8 136.204 -0.4 13.488 1 89.11 ? C9 CLR 3001 B 1 HETATM 10 C C10 CLR . . . J 8 135.732 -0.823 14.896 1 89.33 ? C10 CLR 3001 B 1 HETATM 11 C C11 CLR . . . J 8 136.248 -1.547 12.451 1 89.08 ? C11 CLR 3001 B 1 HETATM 12 C C12 CLR . . . J 8 136.794 -1.131 11.07 1 89.01 ? C12 CLR 3001 B 1 HETATM 13 C C13 CLR . . . J 8 136.151 0.154 10.543 1 88.91 ? C13 CLR 3001 B 1 HETATM 14 C C14 CLR . . . J 8 136.294 1.198 11.646 1 88.87 ? C14 CLR 3001 B 1 HETATM 15 C C15 CLR . . . J 8 136.126 2.572 10.996 1 88.88 ? C15 CLR 3001 B 1 HETATM 16 C C16 CLR . . . J 8 136.73 2.359 9.606 1 88.82 ? C16 CLR 3001 B 1 HETATM 17 C C17 CLR . . . J 8 136.866 0.842 9.365 1 88.67 ? C17 CLR 3001 B 1 HETATM 18 C C18 CLR . . . J 8 134.678 -0.13 10.208 1 89.08 ? C18 CLR 3001 B 1 HETATM 19 C C19 CLR . . . J 8 134.362 -1.515 14.857 1 89.25 ? C19 CLR 3001 B 1 HETATM 20 C C20 CLR . . . J 8 136.458 0.429 7.933 1 88.27 ? C20 CLR 3001 B 1 HETATM 21 C C21 CLR . . . J 8 136.98 -0.961 7.563 1 88.37 ? C21 CLR 3001 B 1 HETATM 22 C C22 CLR . . . J 8 136.936 1.444 6.894 1 87.79 ? C22 CLR 3001 B 1 HETATM 23 C C23 CLR . . . J 8 136.303 1.288 5.51 1 87.5 ? C23 CLR 3001 B 1 HETATM 24 C C24 CLR . . . J 8 136.759 2.456 4.635 1 87.41 ? C24 CLR 3001 B 1 HETATM 25 C C25 CLR . . . J 8 136.994 2.127 3.159 1 87.21 ? C25 CLR 3001 B 1 HETATM 26 C C26 CLR . . . J 8 137.496 3.365 2.419 1 86.68 ? C26 CLR 3001 B 1 HETATM 27 C C27 CLR . . . J 8 137.973 0.971 2.957 1 87.18 ? C27 CLR 3001 B 1 HETATM 28 O O1 CLR . . . J 8 136.498 -0.756 19.204 1 89.82 ? O1 CLR 3001 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #