data_3A3Y # _model_server_result.job_id FQgmPvwkiG7f4yaexpgSAw _model_server_result.datetime_utc '2024-11-24 01:18:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3a3y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":4001}' # _entry.id 3A3Y # _exptl.entry_id 3A3Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 9 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.63 _cell.angle_gamma 90 _cell.entry_id 3A3Y _cell.length_a 222.884 _cell.length_b 50.72 _cell.length_c 163.342 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3A3Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 K N N ? 9 L N N ? 9 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 127 B CYS 127 1_555 B SG CYS 150 B CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 B SG CYS 160 B CYS 160 1_555 B SG CYS 176 B CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 B SG CYS 215 B CYS 215 1_555 B SG CYS 278 B CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A OD1 ASP 381 A ASP 376 1_555 E MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc2 A O THR 383 A THR 378 1_555 E MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc3 A OD2 ASP 722 A ASP 717 1_555 E MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc4 A O ALA 733 A ALA 728 1_555 H K K . A K 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? metalc ? metalc5 A O THR 784 A THR 779 1_555 F K K . A K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.913 ? metalc ? metalc6 E MG MG . A MG 2002 1_555 N O HOH . A HOH 5024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc7 E MG MG . A MG 2002 1_555 N O HOH . A HOH 5026 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc8 F K K . A K 2003 1_555 N O HOH . A HOH 5006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 318 n n C1 O1 NAG sing 319 n n C1 O5 NAG sing 320 n n C1 H1 NAG sing 321 n n C2 C3 NAG sing 322 n n C2 N2 NAG sing 323 n n C2 H2 NAG sing 324 n n C3 C4 NAG sing 325 n n C3 O3 NAG sing 326 n n C3 H3 NAG sing 327 n n C4 C5 NAG sing 328 n n C4 O4 NAG sing 329 n n C4 H4 NAG sing 330 n n C5 C6 NAG sing 331 n n C5 O5 NAG sing 332 n n C5 H5 NAG sing 333 n n C6 O6 NAG sing 334 n n C6 H61 NAG sing 335 n n C6 H62 NAG sing 336 n n C7 C8 NAG sing 337 n n C7 N2 NAG sing 338 n n C7 O7 NAG doub 339 n n C8 H81 NAG sing 340 n n C8 H82 NAG sing 341 n n C8 H83 NAG sing 342 n n N2 HN2 NAG sing 343 n n O1 HO1 NAG sing 344 n n O3 HO3 NAG sing 345 n n O4 HO4 NAG sing 346 n n O6 HO6 NAG sing 347 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3A3Y _atom_sites.fract_transf_matrix[1][1] 0.004487 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001171 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019716 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006327 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MF4 A 1 2001 2001 MF4 MF4 . E 5 MG A 1 2002 2002 MG MG . F 6 K A 1 2003 2003 K K . G 6 K A 1 2004 2004 K K . H 6 K A 1 2005 2005 K K . I 7 OBN A 1 6000 6000 OBN OBN . J 8 CLR B 1 3001 3001 CLR CLR . K 9 NAG B 1 4001 4001 NAG NAG . L 9 NAG B 1 4002 4002 NAG NAG . M 9 NAG B 1 4021 4021 NAG NAG . N 10 HOH A 1 5001 5001 HOH HOH . N 10 HOH A 2 5002 5002 HOH HOH . N 10 HOH A 3 5003 5003 HOH HOH . N 10 HOH A 4 5004 5004 HOH HOH . N 10 HOH A 5 5005 5005 HOH HOH . N 10 HOH A 6 5006 5006 HOH HOH . N 10 HOH A 7 5007 5007 HOH HOH . N 10 HOH A 8 5008 5008 HOH HOH . N 10 HOH A 9 5009 5009 HOH HOH . N 10 HOH A 10 5010 5010 HOH HOH . N 10 HOH A 11 5011 5011 HOH HOH . N 10 HOH A 12 5012 5012 HOH HOH . N 10 HOH A 13 5013 5013 HOH HOH . N 10 HOH A 14 5014 5014 HOH HOH . N 10 HOH A 15 5015 5015 HOH HOH . N 10 HOH A 16 5016 5016 HOH HOH . N 10 HOH A 17 5017 5017 HOH HOH . N 10 HOH A 18 5018 5018 HOH HOH . N 10 HOH A 19 5019 5019 HOH HOH . N 10 HOH A 20 5020 5020 HOH HOH . N 10 HOH A 21 5021 5021 HOH HOH . N 10 HOH A 22 5022 5022 HOH HOH . N 10 HOH A 23 5023 5023 HOH HOH . N 10 HOH A 24 5024 5024 HOH HOH . N 10 HOH A 25 5025 5025 HOH HOH . N 10 HOH A 26 5026 5026 HOH HOH . N 10 HOH A 27 5027 5027 HOH HOH . N 10 HOH A 28 5028 5028 HOH HOH . N 10 HOH A 29 5029 5029 HOH HOH . N 10 HOH A 30 5030 5030 HOH HOH . N 10 HOH A 31 5031 5031 HOH HOH . N 10 HOH A 32 5032 5032 HOH HOH . N 10 HOH A 33 5033 5033 HOH HOH . N 10 HOH A 34 5034 5034 HOH HOH . N 10 HOH A 35 5035 5035 HOH HOH . N 10 HOH A 36 5036 5036 HOH HOH . N 10 HOH A 37 5037 5037 HOH HOH . N 10 HOH A 38 5038 5038 HOH HOH . N 10 HOH A 39 5039 5039 HOH HOH . N 10 HOH A 40 5040 5040 HOH HOH . N 10 HOH A 41 5041 5041 HOH HOH . N 10 HOH A 42 5042 5042 HOH HOH . N 10 HOH A 43 5043 5043 HOH HOH . N 10 HOH A 44 5044 5044 HOH HOH . N 10 HOH A 45 5045 5045 HOH HOH . N 10 HOH A 46 5046 5046 HOH HOH . N 10 HOH A 47 5047 5047 HOH HOH . N 10 HOH A 48 5048 5048 HOH HOH . N 10 HOH A 49 5049 5049 HOH HOH . N 10 HOH A 50 5050 5050 HOH HOH . N 10 HOH A 51 5051 5051 HOH HOH . N 10 HOH A 52 5052 5052 HOH HOH . N 10 HOH A 53 5053 5053 HOH HOH . N 10 HOH A 54 5054 5054 HOH HOH . N 10 HOH A 55 5055 5055 HOH HOH . N 10 HOH A 56 5056 5056 HOH HOH . N 10 HOH A 57 5057 5057 HOH HOH . N 10 HOH A 58 5058 5058 HOH HOH . N 10 HOH A 59 5059 5059 HOH HOH . N 10 HOH A 60 5060 5060 HOH HOH . N 10 HOH A 61 5061 5061 HOH HOH . N 10 HOH A 62 5062 5062 HOH HOH . N 10 HOH A 63 5063 5063 HOH HOH . N 10 HOH A 64 5064 5064 HOH HOH . N 10 HOH A 65 5065 5065 HOH HOH . O 10 HOH G 1 5000 5000 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . K 9 149.662 4.242 -39.998 1 102.19 ? C1 NAG 4001 B 1 HETATM 2 C C2 NAG . . . K 9 150.228 2.838 -39.843 1 102.16 ? C2 NAG 4001 B 1 HETATM 3 C C3 NAG . . . K 9 151.739 2.916 -39.656 1 102.35 ? C3 NAG 4001 B 1 HETATM 4 C C4 NAG . . . K 9 152.405 3.892 -40.633 1 102.46 ? C4 NAG 4001 B 1 HETATM 5 C C5 NAG . . . K 9 151.613 5.175 -40.891 1 102.52 ? C5 NAG 4001 B 1 HETATM 6 C C6 NAG . . . K 9 152.178 5.949 -42.081 1 102.59 ? C6 NAG 4001 B 1 HETATM 7 C C7 NAG . . . K 9 148.512 1.411 -38.827 1 101.55 ? C7 NAG 4001 B 1 HETATM 8 C C8 NAG . . . K 9 148.006 0.791 -37.558 1 101.28 ? C8 NAG 4001 B 1 HETATM 9 N N2 NAG . . . K 9 149.606 2.165 -38.716 1 101.85 ? N2 NAG 4001 B 1 HETATM 10 O O3 NAG . . . K 9 152.291 1.631 -39.83 1 102.3 ? O3 NAG 4001 B 1 HETATM 11 O O4 NAG . . . K 9 153.66 4.272 -40.121 1 102.49 ? O4 NAG 4001 B 1 HETATM 12 O O5 NAG . . . K 9 150.25 4.875 -41.114 1 102.48 ? O5 NAG 4001 B 1 HETATM 13 O O6 NAG . . . K 9 152.31 5.1 -43.203 1 102.59 ? O6 NAG 4001 B 1 HETATM 14 O O7 NAG . . . K 9 147.921 1.213 -39.889 1 101.45 ? O7 NAG 4001 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #