data_3A3Y
#
_model_server_result.job_id            e1ddOwzvQTtdYg_li-HWVg 
_model_server_result.datetime_utc      '2024-12-18 01:59:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3a3y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":4021}' 
#
_entry.id    3A3Y 
#
_exptl.entry_id    3A3Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          9 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.63 
_cell.angle_gamma         90 
_cell.entry_id            3A3Y 
_cell.length_a            222.884 
_cell.length_b            50.72 
_cell.length_c            163.342 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3A3Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 9 K N N 
? 9 L N N 
? 9 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 127 B CYS 127 1_555 B SG CYS 150 B CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf2 B SG CYS 160 B CYS 160 1_555 B SG CYS 176 B CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf3 B SG CYS 215 B CYS 215 1_555 B SG CYS 278 B CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc1 A OD1 ASP 381 A ASP 376 1_555 E MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc2 A O THR 383 A THR 378 1_555 E MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc3 A OD2 ASP 722 A ASP 717 1_555 E MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc4 A O ALA 733 A ALA 728 1_555 H K K . A K 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? 
metalc ? metalc5 A O THR 784 A THR 779 1_555 F K K . A K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.913 ? 
metalc ? metalc6 E MG MG . A MG 2002 1_555 N O HOH . A HOH 5024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc7 E MG MG . A MG 2002 1_555 N O HOH . A HOH 5026 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc8 F K K . A K 2003 1_555 N O HOH . A HOH 5006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 318 n n 
C1 O1 NAG sing 319 n n 
C1 O5 NAG sing 320 n n 
C1 H1 NAG sing 321 n n 
C2 C3 NAG sing 322 n n 
C2 N2 NAG sing 323 n n 
C2 H2 NAG sing 324 n n 
C3 C4 NAG sing 325 n n 
C3 O3 NAG sing 326 n n 
C3 H3 NAG sing 327 n n 
C4 C5 NAG sing 328 n n 
C4 O4 NAG sing 329 n n 
C4 H4 NAG sing 330 n n 
C5 C6 NAG sing 331 n n 
C5 O5 NAG sing 332 n n 
C5 H5 NAG sing 333 n n 
C6 O6 NAG sing 334 n n 
C6 H61 NAG sing 335 n n 
C6 H62 NAG sing 336 n n 
C7 C8 NAG sing 337 n n 
C7 N2 NAG sing 338 n n 
C7 O7 NAG doub 339 n n 
C8 H81 NAG sing 340 n n 
C8 H82 NAG sing 341 n n 
C8 H83 NAG sing 342 n n 
N2 HN2 NAG sing 343 n n 
O1 HO1 NAG sing 344 n n 
O3 HO3 NAG sing 345 n n 
O4 HO4 NAG sing 346 n n 
O6 HO6 NAG sing 347 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3A3Y 
_atom_sites.fract_transf_matrix[1][1]    0.004487 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001171 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019716 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006327 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 MF4 A 1 2001 2001 MF4 MF4 . 
E 5 MG A 1 2002 2002 MG MG . 
F 6 K A 1 2003 2003 K K . 
G 6 K A 1 2004 2004 K K . 
H 6 K A 1 2005 2005 K K . 
I 7 OBN A 1 6000 6000 OBN OBN . 
J 8 CLR B 1 3001 3001 CLR CLR . 
K 9 NAG B 1 4001 4001 NAG NAG . 
L 9 NAG B 1 4002 4002 NAG NAG . 
M 9 NAG B 1 4021 4021 NAG NAG . 
N 10 HOH A 1 5001 5001 HOH HOH . 
N 10 HOH A 2 5002 5002 HOH HOH . 
N 10 HOH A 3 5003 5003 HOH HOH . 
N 10 HOH A 4 5004 5004 HOH HOH . 
N 10 HOH A 5 5005 5005 HOH HOH . 
N 10 HOH A 6 5006 5006 HOH HOH . 
N 10 HOH A 7 5007 5007 HOH HOH . 
N 10 HOH A 8 5008 5008 HOH HOH . 
N 10 HOH A 9 5009 5009 HOH HOH . 
N 10 HOH A 10 5010 5010 HOH HOH . 
N 10 HOH A 11 5011 5011 HOH HOH . 
N 10 HOH A 12 5012 5012 HOH HOH . 
N 10 HOH A 13 5013 5013 HOH HOH . 
N 10 HOH A 14 5014 5014 HOH HOH . 
N 10 HOH A 15 5015 5015 HOH HOH . 
N 10 HOH A 16 5016 5016 HOH HOH . 
N 10 HOH A 17 5017 5017 HOH HOH . 
N 10 HOH A 18 5018 5018 HOH HOH . 
N 10 HOH A 19 5019 5019 HOH HOH . 
N 10 HOH A 20 5020 5020 HOH HOH . 
N 10 HOH A 21 5021 5021 HOH HOH . 
N 10 HOH A 22 5022 5022 HOH HOH . 
N 10 HOH A 23 5023 5023 HOH HOH . 
N 10 HOH A 24 5024 5024 HOH HOH . 
N 10 HOH A 25 5025 5025 HOH HOH . 
N 10 HOH A 26 5026 5026 HOH HOH . 
N 10 HOH A 27 5027 5027 HOH HOH . 
N 10 HOH A 28 5028 5028 HOH HOH . 
N 10 HOH A 29 5029 5029 HOH HOH . 
N 10 HOH A 30 5030 5030 HOH HOH . 
N 10 HOH A 31 5031 5031 HOH HOH . 
N 10 HOH A 32 5032 5032 HOH HOH . 
N 10 HOH A 33 5033 5033 HOH HOH . 
N 10 HOH A 34 5034 5034 HOH HOH . 
N 10 HOH A 35 5035 5035 HOH HOH . 
N 10 HOH A 36 5036 5036 HOH HOH . 
N 10 HOH A 37 5037 5037 HOH HOH . 
N 10 HOH A 38 5038 5038 HOH HOH . 
N 10 HOH A 39 5039 5039 HOH HOH . 
N 10 HOH A 40 5040 5040 HOH HOH . 
N 10 HOH A 41 5041 5041 HOH HOH . 
N 10 HOH A 42 5042 5042 HOH HOH . 
N 10 HOH A 43 5043 5043 HOH HOH . 
N 10 HOH A 44 5044 5044 HOH HOH . 
N 10 HOH A 45 5045 5045 HOH HOH . 
N 10 HOH A 46 5046 5046 HOH HOH . 
N 10 HOH A 47 5047 5047 HOH HOH . 
N 10 HOH A 48 5048 5048 HOH HOH . 
N 10 HOH A 49 5049 5049 HOH HOH . 
N 10 HOH A 50 5050 5050 HOH HOH . 
N 10 HOH A 51 5051 5051 HOH HOH . 
N 10 HOH A 52 5052 5052 HOH HOH . 
N 10 HOH A 53 5053 5053 HOH HOH . 
N 10 HOH A 54 5054 5054 HOH HOH . 
N 10 HOH A 55 5055 5055 HOH HOH . 
N 10 HOH A 56 5056 5056 HOH HOH . 
N 10 HOH A 57 5057 5057 HOH HOH . 
N 10 HOH A 58 5058 5058 HOH HOH . 
N 10 HOH A 59 5059 5059 HOH HOH . 
N 10 HOH A 60 5060 5060 HOH HOH . 
N 10 HOH A 61 5061 5061 HOH HOH . 
N 10 HOH A 62 5062 5062 HOH HOH . 
N 10 HOH A 63 5063 5063 HOH HOH . 
N 10 HOH A 64 5064 5064 HOH HOH . 
N 10 HOH A 65 5065 5065 HOH HOH . 
O 10 HOH G 1 5000 5000 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . M 9 155.695 21.487 -50.688 1 117.32 ? C1 NAG 4021 B 1 
HETATM 2 C C2 NAG . . . M 9 156.965 22.32 -50.76 1 117.34 ? C2 NAG 4021 B 1 
HETATM 3 C C3 NAG . . . M 9 157.325 22.498 -52.232 1 117.46 ? C3 NAG 4021 B 1 
HETATM 4 C C4 NAG . . . M 9 157.367 21.16 -52.978 1 117.31 ? C4 NAG 4021 B 1 
HETATM 5 C C5 NAG . . . M 9 156.192 20.237 -52.623 1 117.16 ? C5 NAG 4021 B 1 
HETATM 6 C C6 NAG . . . M 9 156.446 18.818 -53.122 1 117.02 ? C6 NAG 4021 B 1 
HETATM 7 C C7 NAG . . . M 9 157.421 23.984 -49.002 1 116.81 ? C7 NAG 4021 B 1 
HETATM 8 C C8 NAG . . . M 9 157.13 25.379 -48.516 1 116.7 ? C8 NAG 4021 B 1 
HETATM 9 N N2 NAG . . . M 9 156.808 23.622 -50.133 1 117.07 ? N2 NAG 4021 B 1 
HETATM 10 O O3 NAG . . . M 9 158.576 23.138 -52.344 1 117.59 ? O3 NAG 4021 B 1 
HETATM 11 O O4 NAG . . . M 9 157.371 21.418 -54.366 1 117.04 ? O4 NAG 4021 B 1 
HETATM 12 O O5 NAG . . . M 9 155.968 20.207 -51.222 1 117.19 ? O5 NAG 4021 B 1 
HETATM 13 O O6 NAG . . . M 9 155.454 17.946 -52.628 1 116.82 ? O6 NAG 4021 B 1 
HETATM 14 O O7 NAG . . . M 9 158.177 23.249 -48.362 1 116.59 ? O7 NAG 4021 B 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#