data_3A3Y # _model_server_result.job_id 5N-Q70vYxw45RuUMkzfIgg _model_server_result.datetime_utc '2024-11-08 13:52:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3a3y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":6000}' # _entry.id 3A3Y # _exptl.entry_id 3A3Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 584.652 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description OUABAIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.63 _cell.angle_gamma 90 _cell.entry_id 3A3Y _cell.length_a 222.884 _cell.length_b 50.72 _cell.length_c 163.342 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3A3Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 127 B CYS 127 1_555 B SG CYS 150 B CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 B SG CYS 160 B CYS 160 1_555 B SG CYS 176 B CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 B SG CYS 215 B CYS 215 1_555 B SG CYS 278 B CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A OD1 ASP 381 A ASP 376 1_555 E MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc2 A O THR 383 A THR 378 1_555 E MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc3 A OD2 ASP 722 A ASP 717 1_555 E MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc4 A O ALA 733 A ALA 728 1_555 H K K . A K 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? metalc ? metalc5 A O THR 784 A THR 779 1_555 F K K . A K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.913 ? metalc ? metalc6 E MG MG . A MG 2002 1_555 N O HOH . A HOH 5024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc7 E MG MG . A MG 2002 1_555 N O HOH . A HOH 5026 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc8 F K K . A K 2003 1_555 N O HOH . A HOH 5006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? # _chem_comp.formula 'C29 H44 O12' _chem_comp.formula_weight 584.652 _chem_comp.id OBN _chem_comp.mon_nstd_flag . _chem_comp.name OUABAIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3A3Y _atom_sites.fract_transf_matrix[1][1] 0.004487 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001171 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019716 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006327 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MF4 A 1 2001 2001 MF4 MF4 . E 5 MG A 1 2002 2002 MG MG . F 6 K A 1 2003 2003 K K . G 6 K A 1 2004 2004 K K . H 6 K A 1 2005 2005 K K . I 7 OBN A 1 6000 6000 OBN OBN . J 8 CLR B 1 3001 3001 CLR CLR . K 9 NAG B 1 4001 4001 NAG NAG . L 9 NAG B 1 4002 4002 NAG NAG . M 9 NAG B 1 4021 4021 NAG NAG . N 10 HOH A 1 5001 5001 HOH HOH . N 10 HOH A 2 5002 5002 HOH HOH . N 10 HOH A 3 5003 5003 HOH HOH . N 10 HOH A 4 5004 5004 HOH HOH . N 10 HOH A 5 5005 5005 HOH HOH . N 10 HOH A 6 5006 5006 HOH HOH . N 10 HOH A 7 5007 5007 HOH HOH . N 10 HOH A 8 5008 5008 HOH HOH . N 10 HOH A 9 5009 5009 HOH HOH . N 10 HOH A 10 5010 5010 HOH HOH . N 10 HOH A 11 5011 5011 HOH HOH . N 10 HOH A 12 5012 5012 HOH HOH . N 10 HOH A 13 5013 5013 HOH HOH . N 10 HOH A 14 5014 5014 HOH HOH . N 10 HOH A 15 5015 5015 HOH HOH . N 10 HOH A 16 5016 5016 HOH HOH . N 10 HOH A 17 5017 5017 HOH HOH . N 10 HOH A 18 5018 5018 HOH HOH . N 10 HOH A 19 5019 5019 HOH HOH . N 10 HOH A 20 5020 5020 HOH HOH . N 10 HOH A 21 5021 5021 HOH HOH . N 10 HOH A 22 5022 5022 HOH HOH . N 10 HOH A 23 5023 5023 HOH HOH . N 10 HOH A 24 5024 5024 HOH HOH . N 10 HOH A 25 5025 5025 HOH HOH . N 10 HOH A 26 5026 5026 HOH HOH . N 10 HOH A 27 5027 5027 HOH HOH . N 10 HOH A 28 5028 5028 HOH HOH . N 10 HOH A 29 5029 5029 HOH HOH . N 10 HOH A 30 5030 5030 HOH HOH . N 10 HOH A 31 5031 5031 HOH HOH . N 10 HOH A 32 5032 5032 HOH HOH . N 10 HOH A 33 5033 5033 HOH HOH . N 10 HOH A 34 5034 5034 HOH HOH . N 10 HOH A 35 5035 5035 HOH HOH . N 10 HOH A 36 5036 5036 HOH HOH . N 10 HOH A 37 5037 5037 HOH HOH . N 10 HOH A 38 5038 5038 HOH HOH . N 10 HOH A 39 5039 5039 HOH HOH . N 10 HOH A 40 5040 5040 HOH HOH . N 10 HOH A 41 5041 5041 HOH HOH . N 10 HOH A 42 5042 5042 HOH HOH . N 10 HOH A 43 5043 5043 HOH HOH . N 10 HOH A 44 5044 5044 HOH HOH . N 10 HOH A 45 5045 5045 HOH HOH . N 10 HOH A 46 5046 5046 HOH HOH . N 10 HOH A 47 5047 5047 HOH HOH . N 10 HOH A 48 5048 5048 HOH HOH . N 10 HOH A 49 5049 5049 HOH HOH . N 10 HOH A 50 5050 5050 HOH HOH . N 10 HOH A 51 5051 5051 HOH HOH . N 10 HOH A 52 5052 5052 HOH HOH . N 10 HOH A 53 5053 5053 HOH HOH . N 10 HOH A 54 5054 5054 HOH HOH . N 10 HOH A 55 5055 5055 HOH HOH . N 10 HOH A 56 5056 5056 HOH HOH . N 10 HOH A 57 5057 5057 HOH HOH . N 10 HOH A 58 5058 5058 HOH HOH . N 10 HOH A 59 5059 5059 HOH HOH . N 10 HOH A 60 5060 5060 HOH HOH . N 10 HOH A 61 5061 5061 HOH HOH . N 10 HOH A 62 5062 5062 HOH HOH . N 10 HOH A 63 5063 5063 HOH HOH . N 10 HOH A 64 5064 5064 HOH HOH . N 10 HOH A 65 5065 5065 HOH HOH . O 10 HOH G 1 5000 5000 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OBN . . . I 7 148.205 16.497 -3.545 1 96.13 ? C1 OBN 6000 A 1 HETATM 2 C C2 OBN . . . I 7 147.728 15.107 -3.99 1 96.41 ? C2 OBN 6000 A 1 HETATM 3 C C3 OBN . . . I 7 146.921 15.188 -5.281 1 96.7 ? C3 OBN 6000 A 1 HETATM 4 C C4 OBN . . . I 7 145.727 16.111 -5.052 1 96.2 ? C4 OBN 6000 A 1 HETATM 5 C C5 OBN . . . I 7 146.126 17.511 -4.564 1 95.77 ? C5 OBN 6000 A 1 HETATM 6 C C6 OBN . . . I 7 144.868 18.347 -4.338 1 95.46 ? C6 OBN 6000 A 1 HETATM 7 C C7 OBN . . . I 7 144.084 17.886 -3.115 1 95.11 ? C7 OBN 6000 A 1 HETATM 8 C C8 OBN . . . I 7 144.956 17.849 -1.852 1 94.81 ? C8 OBN 6000 A 1 HETATM 9 C C9 OBN . . . I 7 146.261 17.05 -2.054 1 95.05 ? C9 OBN 6000 A 1 HETATM 10 C C10 OBN . . . I 7 147.053 17.494 -3.316 1 95.71 ? C10 OBN 6000 A 1 HETATM 11 C C11 OBN . . . I 7 147.04 17.022 -0.727 1 94.29 ? C11 OBN 6000 A 1 HETATM 12 C C12 OBN . . . I 7 146.222 16.225 0.271 1 94.14 ? C12 OBN 6000 A 1 HETATM 13 C C13 OBN . . . I 7 144.871 16.865 0.587 1 94.1 ? C13 OBN 6000 A 1 HETATM 14 C C14 OBN . . . I 7 144.11 17.433 -0.634 1 94.37 ? C14 OBN 6000 A 1 HETATM 15 C C15 OBN . . . I 7 143.034 16.425 -1.034 1 94.2 ? C15 OBN 6000 A 1 HETATM 16 C C16 OBN . . . I 7 142.808 15.508 0.149 1 93.96 ? C16 OBN 6000 A 1 HETATM 17 C C17 OBN . . . I 7 143.989 15.71 1.09 1 93.92 ? C17 OBN 6000 A 1 HETATM 18 C C18 OBN . . . I 7 145.136 17.943 1.643 1 93.91 ? C18 OBN 6000 A 1 HETATM 19 C C19 OBN . . . I 7 147.589 18.922 -3.065 1 95.66 ? C19 OBN 6000 A 1 HETATM 20 C C20 OBN . . . I 7 143.472 15.84 2.493 1 93.84 ? C20 OBN 6000 A 1 HETATM 21 C C21 OBN . . . I 7 142.615 16.982 3.026 1 93.82 ? C21 OBN 6000 A 1 HETATM 22 C C22 OBN . . . I 7 143.737 14.898 3.397 1 93.74 ? C22 OBN 6000 A 1 HETATM 23 C C23 OBN . . . I 7 143.289 15.457 4.669 1 93.79 ? C23 OBN 6000 A 1 HETATM 24 C C1' OBN . . . I 7 147.694 15.161 -7.603 1 98.2 ? C1' OBN 6000 A 1 HETATM 25 C C2' OBN . . . I 7 148.866 15.707 -8.424 1 98.61 ? C2' OBN 6000 A 1 HETATM 26 C C3' OBN . . . I 7 150.194 15.061 -8.017 1 98.73 ? C3' OBN 6000 A 1 HETATM 27 C C4' OBN . . . I 7 150.103 13.535 -8.031 1 98.71 ? C4' OBN 6000 A 1 HETATM 28 C C5' OBN . . . I 7 148.906 13.061 -7.202 1 98.59 ? C5' OBN 6000 A 1 HETATM 29 C C6' OBN . . . I 7 148.698 11.557 -7.33 1 98.55 ? C6' OBN 6000 A 1 HETATM 30 O O1 OBN . . . I 7 149.144 17.013 -4.503 1 96.49 ? O1 OBN 6000 A 1 HETATM 31 O O3 OBN . . . I 7 147.78 15.725 -6.289 1 97.48 ? O3 OBN 6000 A 1 HETATM 32 O O5 OBN . . . I 7 146.831 18.144 -5.633 1 95.96 ? O5 OBN 6000 A 1 HETATM 33 O O11 OBN . . . I 7 148.334 16.41 -0.809 1 93.82 ? O11 OBN 6000 A 1 HETATM 34 O O14 OBN . . . I 7 143.393 18.596 -0.217 1 94.58 ? O14 OBN 6000 A 1 HETATM 35 O O19 OBN . . . I 7 148.967 18.936 -2.658 1 95.51 ? O19 OBN 6000 A 1 HETATM 36 O O21 OBN . . . I 7 142.564 16.687 4.424 1 93.89 ? O21 OBN 6000 A 1 HETATM 37 O O23 OBN . . . I 7 143.493 14.981 5.771 1 93.4 ? O23 OBN 6000 A 1 HETATM 38 O O2' OBN . . . I 7 148.617 15.507 -9.822 1 98.9 ? O2' OBN 6000 A 1 HETATM 39 O O3' OBN . . . I 7 151.238 15.494 -8.894 1 98.75 ? O3' OBN 6000 A 1 HETATM 40 O O4' OBN . . . I 7 151.319 12.979 -7.514 1 98.45 ? O4' OBN 6000 A 1 HETATM 41 O O5' OBN . . . I 7 147.693 13.72 -7.606 1 98.4 ? O5' OBN 6000 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 41 #