data_3A4D
#
_model_server_result.job_id            z0b5tNK_bGvLI7FpEhcdOw 
_model_server_result.datetime_utc      '2024-10-31 21:38:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3a4d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":130}' 
#
_entry.id    3A4D 
#
_exptl.entry_id    3A4D 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3A4D 
_cell.length_a            85.84 
_cell.length_b            43.084 
_cell.length_c            64.29 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3A4D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
? 3 G N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 110 n n 
C1 C2 GOL sing 111 n n 
C1 H11 GOL sing 112 n n 
C1 H12 GOL sing 113 n n 
O1 HO1 GOL sing 114 n n 
C2 O2 GOL sing 115 n n 
C2 C3 GOL sing 116 n n 
C2 H2 GOL sing 117 n n 
O2 HO2 GOL sing 118 n n 
C3 O3 GOL sing 119 n n 
C3 H31 GOL sing 120 n n 
C3 H32 GOL sing 121 n n 
O3 HO3 GOL sing 122 n n 
#
_atom_sites.entry_id                     3A4D 
_atom_sites.fract_transf_matrix[1][1]    0.01165 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02321 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015555 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 128 2 SO4 SO4 . 
D 3 GOL A 1 129 3 GOL GOL . 
E 2 SO4 B 1 128 1 SO4 SO4 . 
F 3 GOL B 1 129 126 GOL GOL . 
G 3 GOL B 1 130 2 GOL GOL . 
H 4 HOH A 1 130 130 HOH HOH . 
H 4 HOH A 2 131 131 HOH HOH . 
H 4 HOH A 3 132 132 HOH HOH . 
H 4 HOH A 4 133 133 HOH HOH . 
H 4 HOH A 5 134 134 HOH HOH . 
H 4 HOH A 6 135 135 HOH HOH . 
H 4 HOH A 7 136 136 HOH HOH . 
H 4 HOH A 8 137 137 HOH HOH . 
H 4 HOH A 9 138 138 HOH HOH . 
H 4 HOH A 10 139 139 HOH HOH . 
H 4 HOH A 11 140 140 HOH HOH . 
H 4 HOH A 12 141 141 HOH HOH . 
H 4 HOH A 13 142 142 HOH HOH . 
H 4 HOH A 14 143 143 HOH HOH . 
H 4 HOH A 15 144 144 HOH HOH . 
H 4 HOH A 16 145 145 HOH HOH . 
H 4 HOH A 17 146 146 HOH HOH . 
H 4 HOH A 18 147 147 HOH HOH . 
H 4 HOH A 19 148 148 HOH HOH . 
H 4 HOH A 20 149 149 HOH HOH . 
H 4 HOH A 21 150 5 HOH HOH . 
H 4 HOH A 22 151 151 HOH HOH . 
H 4 HOH A 23 152 152 HOH HOH . 
H 4 HOH A 24 153 153 HOH HOH . 
H 4 HOH A 25 154 154 HOH HOH . 
H 4 HOH A 26 155 155 HOH HOH . 
H 4 HOH A 27 156 156 HOH HOH . 
H 4 HOH A 28 157 157 HOH HOH . 
H 4 HOH A 29 158 158 HOH HOH . 
H 4 HOH A 30 159 159 HOH HOH . 
H 4 HOH A 31 160 160 HOH HOH . 
H 4 HOH A 32 161 161 HOH HOH . 
H 4 HOH A 33 162 162 HOH HOH . 
H 4 HOH A 34 163 163 HOH HOH . 
H 4 HOH A 35 164 164 HOH HOH . 
H 4 HOH A 36 165 165 HOH HOH . 
H 4 HOH A 37 166 166 HOH HOH . 
H 4 HOH A 38 167 167 HOH HOH . 
H 4 HOH A 39 168 168 HOH HOH . 
H 4 HOH A 40 169 169 HOH HOH . 
H 4 HOH A 41 170 170 HOH HOH . 
H 4 HOH A 42 171 171 HOH HOH . 
H 4 HOH A 43 172 172 HOH HOH . 
H 4 HOH A 44 173 173 HOH HOH . 
H 4 HOH A 45 174 174 HOH HOH . 
H 4 HOH A 46 175 175 HOH HOH . 
H 4 HOH A 47 176 176 HOH HOH . 
H 4 HOH A 48 177 177 HOH HOH . 
H 4 HOH A 49 178 178 HOH HOH . 
H 4 HOH A 50 179 179 HOH HOH . 
H 4 HOH A 51 180 180 HOH HOH . 
H 4 HOH A 52 181 181 HOH HOH . 
H 4 HOH A 53 182 182 HOH HOH . 
H 4 HOH A 54 183 183 HOH HOH . 
H 4 HOH A 55 184 184 HOH HOH . 
H 4 HOH A 56 185 185 HOH HOH . 
H 4 HOH A 57 186 186 HOH HOH . 
H 4 HOH A 58 187 187 HOH HOH . 
H 4 HOH A 59 188 188 HOH HOH . 
H 4 HOH A 60 189 189 HOH HOH . 
H 4 HOH A 61 190 190 HOH HOH . 
H 4 HOH A 62 191 191 HOH HOH . 
H 4 HOH A 63 192 192 HOH HOH . 
H 4 HOH A 64 193 193 HOH HOH . 
H 4 HOH A 65 194 194 HOH HOH . 
H 4 HOH A 66 195 126 HOH HOH . 
H 4 HOH A 67 196 127 HOH HOH . 
H 4 HOH A 68 197 128 HOH HOH . 
H 4 HOH A 69 198 129 HOH HOH . 
I 4 HOH B 1 131 131 HOH HOH . 
I 4 HOH B 2 132 132 HOH HOH . 
I 4 HOH B 3 133 133 HOH HOH . 
I 4 HOH B 4 134 134 HOH HOH . 
I 4 HOH B 5 135 135 HOH HOH . 
I 4 HOH B 6 136 136 HOH HOH . 
I 4 HOH B 7 137 137 HOH HOH . 
I 4 HOH B 8 138 138 HOH HOH . 
I 4 HOH B 9 139 139 HOH HOH . 
I 4 HOH B 10 140 140 HOH HOH . 
I 4 HOH B 11 141 141 HOH HOH . 
I 4 HOH B 12 142 142 HOH HOH . 
I 4 HOH B 13 143 143 HOH HOH . 
I 4 HOH B 14 144 144 HOH HOH . 
I 4 HOH B 15 145 145 HOH HOH . 
I 4 HOH B 16 146 146 HOH HOH . 
I 4 HOH B 17 147 147 HOH HOH . 
I 4 HOH B 18 148 148 HOH HOH . 
I 4 HOH B 19 149 149 HOH HOH . 
I 4 HOH B 20 150 150 HOH HOH . 
I 4 HOH B 21 151 151 HOH HOH . 
I 4 HOH B 22 152 152 HOH HOH . 
I 4 HOH B 23 153 153 HOH HOH . 
I 4 HOH B 24 154 154 HOH HOH . 
I 4 HOH B 25 155 155 HOH HOH . 
I 4 HOH B 26 156 156 HOH HOH . 
I 4 HOH B 27 157 157 HOH HOH . 
I 4 HOH B 28 158 158 HOH HOH . 
I 4 HOH B 29 159 159 HOH HOH . 
I 4 HOH B 30 160 160 HOH HOH . 
I 4 HOH B 31 161 161 HOH HOH . 
I 4 HOH B 32 162 162 HOH HOH . 
I 4 HOH B 33 163 163 HOH HOH . 
I 4 HOH B 34 164 164 HOH HOH . 
I 4 HOH B 35 165 165 HOH HOH . 
I 4 HOH B 36 166 166 HOH HOH . 
I 4 HOH B 37 167 167 HOH HOH . 
I 4 HOH B 38 168 168 HOH HOH . 
I 4 HOH B 39 169 169 HOH HOH . 
I 4 HOH B 40 170 170 HOH HOH . 
I 4 HOH B 41 171 171 HOH HOH . 
I 4 HOH B 42 172 172 HOH HOH . 
I 4 HOH B 43 173 173 HOH HOH . 
I 4 HOH B 44 174 4 HOH HOH . 
I 4 HOH B 45 175 6 HOH HOH . 
I 4 HOH B 46 176 7 HOH HOH . 
I 4 HOH B 47 177 8 HOH HOH . 
I 4 HOH B 48 178 9 HOH HOH . 
I 4 HOH B 49 179 127 HOH HOH . 
I 4 HOH B 50 180 128 HOH HOH . 
I 4 HOH B 51 181 129 HOH HOH . 
I 4 HOH B 52 182 130 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 3 -6.637 -17.527 -27.848 1 52.03 ? C1 GOL 130 B 1 
HETATM 2 O O1 GOL . . . G 3 -5.313 -17.469 -27.331 1 49.5 ? O1 GOL 130 B 1 
HETATM 3 C C2 GOL . . . G 3 -7.689 -17.116 -26.8 1 53.22 ? C2 GOL 130 B 1 
HETATM 4 O O2 GOL . . . G 3 -7.199 -17.26 -25.459 1 54.12 ? O2 GOL 130 B 1 
HETATM 5 C C3 GOL . . . G 3 -9.086 -17.788 -26.923 1 53.2 ? C3 GOL 130 B 1 
HETATM 6 O O3 GOL . . . G 3 -9.519 -18.124 -28.245 1 51.23 ? O3 GOL 130 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#