data_3A4F # _model_server_result.job_id 2giuCy6wKmZ8LRxrajL5Ew _model_server_result.datetime_utc '2024-11-23 13:56:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3a4f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":129}' # _entry.id 3A4F # _exptl.entry_id 3A4F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3A4F _cell.length_a 86.203 _cell.length_b 42.466 _cell.length_c 64.012 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3A4F _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 110 n n C1 C2 GOL sing 111 n n C1 H11 GOL sing 112 n n C1 H12 GOL sing 113 n n O1 HO1 GOL sing 114 n n C2 O2 GOL sing 115 n n C2 C3 GOL sing 116 n n C2 H2 GOL sing 117 n n O2 HO2 GOL sing 118 n n C3 O3 GOL sing 119 n n C3 H31 GOL sing 120 n n C3 H32 GOL sing 121 n n O3 HO3 GOL sing 122 n n # _atom_sites.entry_id 3A4F _atom_sites.fract_transf_matrix[1][1] 0.011601 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023548 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015622 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 128 126 GOL GOL . D 2 GOL A 1 129 127 GOL GOL . E 3 SO4 B 1 128 126 SO4 SO4 . F 2 GOL B 1 129 127 GOL GOL . G 2 GOL B 1 131 129 GOL GOL . H 2 GOL B 1 130 128 GOL GOL . I 4 HOH A 1 130 130 HOH HOH . I 4 HOH A 2 131 131 HOH HOH . I 4 HOH A 3 132 132 HOH HOH . I 4 HOH A 4 133 133 HOH HOH . I 4 HOH A 5 134 134 HOH HOH . I 4 HOH A 6 135 135 HOH HOH . I 4 HOH A 7 136 136 HOH HOH . I 4 HOH A 8 137 137 HOH HOH . I 4 HOH A 9 138 138 HOH HOH . I 4 HOH A 10 139 139 HOH HOH . I 4 HOH A 11 140 140 HOH HOH . I 4 HOH A 12 141 141 HOH HOH . I 4 HOH A 13 142 142 HOH HOH . I 4 HOH A 14 143 143 HOH HOH . I 4 HOH A 15 144 144 HOH HOH . I 4 HOH A 16 145 145 HOH HOH . I 4 HOH A 17 146 146 HOH HOH . I 4 HOH A 18 147 147 HOH HOH . I 4 HOH A 19 148 148 HOH HOH . I 4 HOH A 20 149 149 HOH HOH . I 4 HOH A 21 150 150 HOH HOH . I 4 HOH A 22 151 151 HOH HOH . I 4 HOH A 23 152 152 HOH HOH . I 4 HOH A 24 153 153 HOH HOH . I 4 HOH A 25 154 154 HOH HOH . I 4 HOH A 26 155 155 HOH HOH . I 4 HOH A 27 156 156 HOH HOH . I 4 HOH A 28 157 157 HOH HOH . I 4 HOH A 29 158 158 HOH HOH . I 4 HOH A 30 159 159 HOH HOH . I 4 HOH A 31 160 160 HOH HOH . I 4 HOH A 32 161 161 HOH HOH . I 4 HOH A 33 162 162 HOH HOH . I 4 HOH A 34 163 163 HOH HOH . I 4 HOH A 35 164 164 HOH HOH . I 4 HOH A 36 165 165 HOH HOH . I 4 HOH A 37 166 166 HOH HOH . I 4 HOH A 38 167 167 HOH HOH . I 4 HOH A 39 168 168 HOH HOH . I 4 HOH A 40 169 169 HOH HOH . I 4 HOH A 41 170 170 HOH HOH . I 4 HOH A 42 171 171 HOH HOH . I 4 HOH A 43 172 172 HOH HOH . I 4 HOH A 44 173 173 HOH HOH . I 4 HOH A 45 174 174 HOH HOH . I 4 HOH A 46 175 175 HOH HOH . I 4 HOH A 47 176 176 HOH HOH . I 4 HOH A 48 177 177 HOH HOH . I 4 HOH A 49 178 178 HOH HOH . I 4 HOH A 50 179 179 HOH HOH . I 4 HOH A 51 180 180 HOH HOH . I 4 HOH A 52 181 181 HOH HOH . I 4 HOH A 53 182 182 HOH HOH . I 4 HOH A 54 183 183 HOH HOH . I 4 HOH A 55 184 184 HOH HOH . I 4 HOH A 56 185 185 HOH HOH . I 4 HOH A 57 186 186 HOH HOH . I 4 HOH A 58 187 187 HOH HOH . I 4 HOH A 59 188 188 HOH HOH . I 4 HOH A 60 189 189 HOH HOH . I 4 HOH A 61 190 190 HOH HOH . I 4 HOH A 62 191 191 HOH HOH . I 4 HOH A 63 192 192 HOH HOH . I 4 HOH A 64 193 193 HOH HOH . I 4 HOH A 65 194 194 HOH HOH . I 4 HOH A 66 195 195 HOH HOH . I 4 HOH A 67 196 196 HOH HOH . I 4 HOH A 68 197 128 HOH HOH . I 4 HOH A 69 198 129 HOH HOH . J 4 HOH B 1 132 132 HOH HOH . J 4 HOH B 2 133 133 HOH HOH . J 4 HOH B 3 134 134 HOH HOH . J 4 HOH B 4 135 135 HOH HOH . J 4 HOH B 5 136 136 HOH HOH . J 4 HOH B 6 137 137 HOH HOH . J 4 HOH B 7 138 138 HOH HOH . J 4 HOH B 8 139 139 HOH HOH . J 4 HOH B 9 140 140 HOH HOH . J 4 HOH B 10 141 141 HOH HOH . J 4 HOH B 11 142 142 HOH HOH . J 4 HOH B 12 143 143 HOH HOH . J 4 HOH B 13 144 144 HOH HOH . J 4 HOH B 14 145 145 HOH HOH . J 4 HOH B 15 146 146 HOH HOH . J 4 HOH B 16 147 147 HOH HOH . J 4 HOH B 17 148 148 HOH HOH . J 4 HOH B 18 149 149 HOH HOH . J 4 HOH B 19 150 150 HOH HOH . J 4 HOH B 20 151 151 HOH HOH . J 4 HOH B 21 152 152 HOH HOH . J 4 HOH B 22 153 153 HOH HOH . J 4 HOH B 23 154 154 HOH HOH . J 4 HOH B 24 155 155 HOH HOH . J 4 HOH B 25 156 156 HOH HOH . J 4 HOH B 26 157 157 HOH HOH . J 4 HOH B 27 158 158 HOH HOH . J 4 HOH B 28 159 159 HOH HOH . J 4 HOH B 29 160 160 HOH HOH . J 4 HOH B 30 161 161 HOH HOH . J 4 HOH B 31 162 162 HOH HOH . J 4 HOH B 32 163 163 HOH HOH . J 4 HOH B 33 164 164 HOH HOH . J 4 HOH B 34 165 165 HOH HOH . J 4 HOH B 35 166 166 HOH HOH . J 4 HOH B 36 167 167 HOH HOH . J 4 HOH B 37 168 168 HOH HOH . J 4 HOH B 38 169 169 HOH HOH . J 4 HOH B 39 170 170 HOH HOH . J 4 HOH B 40 171 171 HOH HOH . J 4 HOH B 41 172 172 HOH HOH . J 4 HOH B 42 173 173 HOH HOH . J 4 HOH B 43 174 174 HOH HOH . J 4 HOH B 44 175 175 HOH HOH . J 4 HOH B 45 176 176 HOH HOH . J 4 HOH B 46 177 177 HOH HOH . J 4 HOH B 47 178 178 HOH HOH . J 4 HOH B 48 179 179 HOH HOH . J 4 HOH B 49 180 180 HOH HOH . J 4 HOH B 50 181 181 HOH HOH . J 4 HOH B 51 182 182 HOH HOH . J 4 HOH B 52 183 183 HOH HOH . J 4 HOH B 53 184 184 HOH HOH . J 4 HOH B 54 185 185 HOH HOH . J 4 HOH B 55 186 186 HOH HOH . J 4 HOH B 56 187 187 HOH HOH . J 4 HOH B 57 188 188 HOH HOH . J 4 HOH B 58 189 189 HOH HOH . J 4 HOH B 59 190 130 HOH HOH . J 4 HOH B 60 191 131 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 2 -21.43 3.044 -16.147 1 50.53 ? C1 GOL 129 A 1 HETATM 2 O O1 GOL . . . D 2 -21.817 1.68 -16.095 1 52.82 ? O1 GOL 129 A 1 HETATM 3 C C2 GOL . . . D 2 -22.491 3.894 -15.476 1 49.38 ? C2 GOL 129 A 1 HETATM 4 O O2 GOL . . . D 2 -23.534 2.989 -15.308 1 47.57 ? O2 GOL 129 A 1 HETATM 5 C C3 GOL . . . D 2 -22.97 5.019 -16.413 1 52.3 ? C3 GOL 129 A 1 HETATM 6 O O3 GOL . . . D 2 -21.941 5.839 -16.978 1 49.7 ? O3 GOL 129 A 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 449 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #