data_3A4H
#
_model_server_result.job_id            uhM5JDB6tOM4hfQSvxOztQ 
_model_server_result.datetime_utc      '2024-12-21 14:52:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3a4h 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":412}' 
#
_entry.id    3A4H 
#
_exptl.entry_id    3A4H 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3A4H 
_cell.length_a            63.595 
_cell.length_b            65.793 
_cell.length_c            102.264 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3A4H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 160 A ASP 160 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.156 ? 
metalc ? metalc2 A SG CYS 347 A CYS 347 1_555 B FE HEM . A HEM 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     3A4H 
_atom_sites.fract_transf_matrix[1][1]    0.015725 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015199 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009779 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 412 410 HEM HEM . 
C 3 CA A 1 501 501 CA CA2 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 25.779 25.209 10.704 1 31.18 ? CHA HEM 412 A 1 
HETATM 2 C CHB HEM . . . B 2 21.701 22.601 10.974 1 31.44 ? CHB HEM 412 A 1 
HETATM 3 C CHC HEM . . . B 2 21.859 22.758 15.813 1 31.36 ? CHC HEM 412 A 1 
HETATM 4 C CHD HEM . . . B 2 25.735 25.658 15.574 1 31.38 ? CHD HEM 412 A 1 
HETATM 5 C C1A HEM . . . B 2 24.703 24.432 10.352 1 30.89 ? C1A HEM 412 A 1 
HETATM 6 C C2A HEM . . . B 2 24.388 23.957 9.019 1 30.88 ? C2A HEM 412 A 1 
HETATM 7 C C3A HEM . . . B 2 23.266 23.24 9.092 1 31.13 ? C3A HEM 412 A 1 
HETATM 8 C C4A HEM . . . B 2 22.827 23.233 10.478 1 31.48 ? C4A HEM 412 A 1 
HETATM 9 C CMA HEM . . . B 2 22.56 22.538 7.911 1 30.88 ? CMA HEM 412 A 1 
HETATM 10 C CAA HEM . . . B 2 25.202 24.226 7.736 1 31.03 ? CAA HEM 412 A 1 
HETATM 11 C CBA HEM . . . B 2 24.748 25.537 7.101 1 31.14 ? CBA HEM 412 A 1 
HETATM 12 C CGA HEM . . . B 2 25.297 25.673 5.701 1 30.98 ? CGA HEM 412 A 1 
HETATM 13 O O1A HEM . . . B 2 26.153 24.847 5.288 1 31.09 ? O1A HEM 412 A 1 
HETATM 14 O O2A HEM . . . B 2 24.874 26.619 4.989 1 30.81 ? O2A HEM 412 A 1 
HETATM 15 C C1B HEM . . . B 2 21.4 22.372 12.3 1 31.36 ? C1B HEM 412 A 1 
HETATM 16 C C2B HEM . . . B 2 20.334 21.528 12.809 1 31.34 ? C2B HEM 412 A 1 
HETATM 17 C C3B HEM . . . B 2 20.372 21.575 14.143 1 31.62 ? C3B HEM 412 A 1 
HETATM 18 C C4B HEM . . . B 2 21.471 22.445 14.53 1 31.4 ? C4B HEM 412 A 1 
HETATM 19 C CMB HEM . . . B 2 19.323 20.715 11.97 1 30.88 ? CMB HEM 412 A 1 
HETATM 20 C CAB HEM . . . B 2 19.407 20.802 15.076 1 31.76 ? CAB HEM 412 A 1 
HETATM 21 C CBB HEM . . . B 2 19.105 21.236 16.3 1 31.85 ? CBB HEM 412 A 1 
HETATM 22 C C1C HEM . . . B 2 22.935 23.537 16.18 1 31.46 ? C1C HEM 412 A 1 
HETATM 23 C C2C HEM . . . B 2 23.389 23.792 17.537 1 31.61 ? C2C HEM 412 A 1 
HETATM 24 C C3C HEM . . . B 2 24.457 24.587 17.471 1 31.35 ? C3C HEM 412 A 1 
HETATM 25 C C4C HEM . . . B 2 24.719 24.87 16.07 1 31.35 ? C4C HEM 412 A 1 
HETATM 26 C CMC HEM . . . B 2 22.761 23.24 18.841 1 31.53 ? CMC HEM 412 A 1 
HETATM 27 C CAC HEM . . . B 2 25.248 25.109 18.694 1 31.21 ? CAC HEM 412 A 1 
HETATM 28 C CBC HEM . . . B 2 26.571 25.272 18.644 1 31.02 ? CBC HEM 412 A 1 
HETATM 29 C C1D HEM . . . B 2 26.122 25.812 14.261 1 31.17 ? C1D HEM 412 A 1 
HETATM 30 C C2D HEM . . . B 2 27.248 26.603 13.818 1 30.89 ? C2D HEM 412 A 1 
HETATM 31 C C3D HEM . . . B 2 27.264 26.467 12.292 1 31.12 ? C3D HEM 412 A 1 
HETATM 32 C C4D HEM . . . B 2 26.145 25.605 11.972 1 31.24 ? C4D HEM 412 A 1 
HETATM 33 C CMD HEM . . . B 2 28.229 27.413 14.694 1 30.79 ? CMD HEM 412 A 1 
HETATM 34 C CAD HEM . . . B 2 28.271 27.112 11.313 1 31.33 ? CAD HEM 412 A 1 
HETATM 35 C CBD HEM . . . B 2 29.21 26.035 10.776 1 31.44 ? CBD HEM 412 A 1 
HETATM 36 C CGD HEM . . . B 2 30.281 26.617 9.887 1 31.87 ? CGD HEM 412 A 1 
HETATM 37 O O1D HEM . . . B 2 29.986 27.56 9.103 1 32.42 ? O1D HEM 412 A 1 
HETATM 38 O O2D HEM . . . B 2 31.442 26.13 9.953 1 31.48 ? O2D HEM 412 A 1 
HETATM 39 N NA HEM . . . B 2 23.732 23.974 11.216 1 31.08 ? NA HEM 412 A 1 
HETATM 40 N NB HEM . . . B 2 22.068 22.917 13.378 1 31.27 ? NB HEM 412 A 1 
HETATM 41 N NC HEM . . . B 2 23.771 24.212 15.312 1 31.22 ? NC HEM 412 A 1 
HETATM 42 N ND HEM . . . B 2 25.503 25.244 13.151 1 31.3 ? ND HEM 412 A 1 
HETATM 43 FE FE HEM . . . B 2 23.871 23.944 13.236 1 31.54 ? FE HEM 412 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#