data_3A4V # _model_server_result.job_id gPtmbatxB3ONGrmIzEpAWA _model_server_result.datetime_utc '2024-12-06 14:43:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3a4v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":5277}' # _entry.id 3A4V # _exptl.entry_id 3A4V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.37 _cell.angle_gamma 90 _cell.entry_id 3A4V _cell.length_a 149.803 _cell.length_b 45.988 _cell.length_c 89.778 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3A4V _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 237 n n C1 H11 MPD sing 238 n n C1 H12 MPD sing 239 n n C1 H13 MPD sing 240 n n C2 O2 MPD sing 241 n n C2 CM MPD sing 242 n n C2 C3 MPD sing 243 n n O2 HO2 MPD sing 244 n n CM HM1 MPD sing 245 n n CM HM2 MPD sing 246 n n CM HM3 MPD sing 247 n n C3 C4 MPD sing 248 n n C3 H31 MPD sing 249 n n C3 H32 MPD sing 250 n n C4 O4 MPD sing 251 n n C4 C5 MPD sing 252 n n C4 H4 MPD sing 253 n n O4 HO4 MPD sing 254 n n C5 H51 MPD sing 255 n n C5 H52 MPD sing 256 n n C5 H53 MPD sing 257 n n # _atom_sites.entry_id 3A4V _atom_sites.fract_transf_matrix[1][1] 0.006675 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002885 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021745 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012134 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 3001 3001 NAD NAD . D 3 PYR A 1 6450 6450 PYR PYR . E 4 MPD A 1 5276 5276 MPD MPD . F 2 NAD B 1 3002 3002 NAD NAD . G 3 PYR B 1 6451 6451 PYR PYR . H 4 MPD B 1 5277 5277 MPD MPD . I 5 HOH A 1 318 1 HOH TIP . I 5 HOH A 2 319 2 HOH TIP . I 5 HOH A 3 320 4 HOH TIP . I 5 HOH A 4 321 5 HOH TIP . I 5 HOH A 5 322 6 HOH TIP . I 5 HOH A 6 323 7 HOH TIP . I 5 HOH A 7 324 9 HOH TIP . I 5 HOH A 8 325 10 HOH TIP . I 5 HOH A 9 326 12 HOH TIP . I 5 HOH A 10 327 13 HOH TIP . I 5 HOH A 11 328 14 HOH TIP . I 5 HOH A 12 329 16 HOH TIP . I 5 HOH A 13 330 17 HOH TIP . I 5 HOH A 14 331 18 HOH TIP . I 5 HOH A 15 332 20 HOH TIP . I 5 HOH A 16 333 22 HOH TIP . I 5 HOH A 17 334 23 HOH TIP . I 5 HOH A 18 335 24 HOH TIP . I 5 HOH A 19 336 25 HOH TIP . I 5 HOH A 20 337 28 HOH TIP . I 5 HOH A 21 338 29 HOH TIP . I 5 HOH A 22 339 30 HOH TIP . I 5 HOH A 23 340 31 HOH TIP . I 5 HOH A 24 341 32 HOH TIP . I 5 HOH A 25 342 33 HOH TIP . I 5 HOH A 26 343 34 HOH TIP . I 5 HOH A 27 344 37 HOH TIP . I 5 HOH A 28 345 38 HOH TIP . I 5 HOH A 29 346 40 HOH TIP . I 5 HOH A 30 347 41 HOH TIP . I 5 HOH A 31 348 42 HOH TIP . I 5 HOH A 32 349 44 HOH TIP . I 5 HOH A 33 350 45 HOH TIP . I 5 HOH A 34 351 46 HOH TIP . I 5 HOH A 35 352 48 HOH TIP . I 5 HOH A 36 353 50 HOH TIP . I 5 HOH A 37 354 52 HOH TIP . I 5 HOH A 38 355 53 HOH TIP . I 5 HOH A 39 356 54 HOH TIP . I 5 HOH A 40 357 59 HOH TIP . I 5 HOH A 41 358 60 HOH TIP . I 5 HOH A 42 359 61 HOH TIP . I 5 HOH A 43 360 62 HOH TIP . I 5 HOH A 44 361 64 HOH TIP . I 5 HOH A 45 362 65 HOH TIP . I 5 HOH A 46 363 68 HOH TIP . I 5 HOH A 47 364 69 HOH TIP . I 5 HOH A 48 365 73 HOH TIP . I 5 HOH A 49 366 74 HOH TIP . I 5 HOH A 50 367 77 HOH TIP . I 5 HOH A 51 368 81 HOH TIP . I 5 HOH A 52 369 82 HOH TIP . I 5 HOH A 53 370 84 HOH TIP . I 5 HOH A 54 371 86 HOH TIP . I 5 HOH A 55 372 87 HOH TIP . I 5 HOH A 56 373 88 HOH TIP . I 5 HOH A 57 374 89 HOH TIP . I 5 HOH A 58 375 90 HOH TIP . I 5 HOH A 59 376 91 HOH TIP . I 5 HOH A 60 377 96 HOH TIP . I 5 HOH A 61 378 97 HOH TIP . I 5 HOH A 62 379 98 HOH TIP . I 5 HOH A 63 380 99 HOH TIP . I 5 HOH A 64 381 102 HOH TIP . I 5 HOH A 65 382 105 HOH TIP . I 5 HOH A 66 383 106 HOH TIP . I 5 HOH A 67 384 107 HOH TIP . I 5 HOH A 68 385 108 HOH TIP . I 5 HOH A 69 386 111 HOH TIP . I 5 HOH A 70 387 113 HOH TIP . I 5 HOH A 71 388 119 HOH TIP . I 5 HOH A 72 389 121 HOH TIP . I 5 HOH A 73 390 122 HOH TIP . I 5 HOH A 74 391 123 HOH TIP . I 5 HOH A 75 392 124 HOH TIP . I 5 HOH A 76 393 125 HOH TIP . I 5 HOH A 77 394 126 HOH TIP . I 5 HOH A 78 395 129 HOH TIP . I 5 HOH A 79 396 130 HOH TIP . I 5 HOH A 80 397 131 HOH TIP . I 5 HOH A 81 398 133 HOH TIP . I 5 HOH A 82 399 134 HOH TIP . I 5 HOH A 83 400 136 HOH TIP . I 5 HOH A 84 401 137 HOH TIP . I 5 HOH A 85 402 141 HOH TIP . I 5 HOH A 86 403 142 HOH TIP . I 5 HOH A 87 404 143 HOH TIP . I 5 HOH A 88 405 144 HOH TIP . I 5 HOH A 89 406 145 HOH TIP . I 5 HOH A 90 407 146 HOH TIP . I 5 HOH A 91 408 148 HOH TIP . I 5 HOH A 92 409 151 HOH TIP . I 5 HOH A 93 410 154 HOH TIP . I 5 HOH A 94 411 156 HOH TIP . I 5 HOH A 95 412 158 HOH TIP . I 5 HOH A 96 413 160 HOH TIP . I 5 HOH A 97 414 162 HOH TIP . I 5 HOH A 98 415 163 HOH TIP . I 5 HOH A 99 416 164 HOH TIP . I 5 HOH A 100 417 165 HOH TIP . I 5 HOH A 101 418 166 HOH TIP . I 5 HOH A 102 419 167 HOH TIP . I 5 HOH A 103 420 169 HOH TIP . I 5 HOH A 104 421 170 HOH TIP . I 5 HOH A 105 422 171 HOH TIP . I 5 HOH A 106 423 172 HOH TIP . I 5 HOH A 107 424 173 HOH TIP . I 5 HOH A 108 425 175 HOH TIP . I 5 HOH A 109 426 178 HOH TIP . I 5 HOH A 110 427 179 HOH TIP . I 5 HOH A 111 428 180 HOH TIP . I 5 HOH A 112 429 181 HOH TIP . I 5 HOH A 113 430 182 HOH TIP . I 5 HOH A 114 431 183 HOH TIP . I 5 HOH A 115 432 184 HOH TIP . I 5 HOH A 116 433 186 HOH TIP . I 5 HOH A 117 434 189 HOH TIP . I 5 HOH A 118 435 191 HOH TIP . I 5 HOH A 119 436 195 HOH TIP . I 5 HOH A 120 437 197 HOH TIP . I 5 HOH A 121 438 198 HOH TIP . I 5 HOH A 122 439 202 HOH TIP . I 5 HOH A 123 440 203 HOH TIP . I 5 HOH A 124 441 206 HOH TIP . I 5 HOH A 125 442 207 HOH TIP . I 5 HOH A 126 443 209 HOH TIP . I 5 HOH A 127 444 210 HOH TIP . I 5 HOH A 128 445 213 HOH TIP . I 5 HOH A 129 446 214 HOH TIP . I 5 HOH A 130 447 218 HOH TIP . I 5 HOH A 131 448 219 HOH TIP . I 5 HOH A 132 449 220 HOH TIP . I 5 HOH A 133 450 221 HOH TIP . I 5 HOH A 134 451 222 HOH TIP . I 5 HOH A 135 452 226 HOH TIP . I 5 HOH A 136 453 227 HOH TIP . I 5 HOH A 137 454 229 HOH TIP . I 5 HOH A 138 455 230 HOH TIP . I 5 HOH A 139 456 231 HOH TIP . I 5 HOH A 140 457 232 HOH TIP . I 5 HOH A 141 458 233 HOH TIP . I 5 HOH A 142 459 234 HOH TIP . I 5 HOH A 143 460 235 HOH TIP . I 5 HOH A 144 461 236 HOH TIP . I 5 HOH A 145 462 238 HOH TIP . I 5 HOH A 146 463 239 HOH TIP . I 5 HOH A 147 464 245 HOH TIP . I 5 HOH A 148 465 246 HOH TIP . I 5 HOH A 149 466 247 HOH TIP . I 5 HOH A 150 467 248 HOH TIP . I 5 HOH A 151 468 249 HOH TIP . I 5 HOH A 152 469 250 HOH TIP . I 5 HOH A 153 470 252 HOH TIP . I 5 HOH A 154 471 255 HOH TIP . I 5 HOH A 155 472 256 HOH TIP . I 5 HOH A 156 473 257 HOH TIP . I 5 HOH A 157 474 258 HOH TIP . I 5 HOH A 158 475 259 HOH TIP . I 5 HOH A 159 476 260 HOH TIP . I 5 HOH A 160 477 261 HOH TIP . I 5 HOH A 161 478 262 HOH TIP . I 5 HOH A 162 479 263 HOH TIP . I 5 HOH A 163 480 264 HOH TIP . I 5 HOH A 164 481 268 HOH TIP . I 5 HOH A 165 482 275 HOH TIP . I 5 HOH A 166 483 276 HOH TIP . I 5 HOH A 167 484 277 HOH TIP . I 5 HOH A 168 485 278 HOH TIP . I 5 HOH A 169 486 279 HOH TIP . I 5 HOH A 170 487 280 HOH TIP . I 5 HOH A 171 488 283 HOH TIP . I 5 HOH A 172 489 284 HOH TIP . I 5 HOH A 173 490 285 HOH TIP . I 5 HOH A 174 491 286 HOH TIP . I 5 HOH A 175 492 287 HOH TIP . I 5 HOH A 176 493 288 HOH TIP . I 5 HOH A 177 494 289 HOH TIP . I 5 HOH A 178 495 291 HOH TIP . J 5 HOH B 1 318 3 HOH TIP . J 5 HOH B 2 319 8 HOH TIP . J 5 HOH B 3 320 11 HOH TIP . J 5 HOH B 4 321 15 HOH TIP . J 5 HOH B 5 322 19 HOH TIP . J 5 HOH B 6 323 21 HOH TIP . J 5 HOH B 7 324 26 HOH TIP . J 5 HOH B 8 325 27 HOH TIP . J 5 HOH B 9 326 35 HOH TIP . J 5 HOH B 10 327 36 HOH TIP . J 5 HOH B 11 328 39 HOH TIP . J 5 HOH B 12 329 43 HOH TIP . J 5 HOH B 13 330 47 HOH TIP . J 5 HOH B 14 331 49 HOH TIP . J 5 HOH B 15 332 51 HOH TIP . J 5 HOH B 16 333 55 HOH TIP . J 5 HOH B 17 334 56 HOH TIP . J 5 HOH B 18 335 57 HOH TIP . J 5 HOH B 19 336 58 HOH TIP . J 5 HOH B 20 337 63 HOH TIP . J 5 HOH B 21 338 66 HOH TIP . J 5 HOH B 22 339 67 HOH TIP . J 5 HOH B 23 340 70 HOH TIP . J 5 HOH B 24 341 71 HOH TIP . J 5 HOH B 25 342 72 HOH TIP . J 5 HOH B 26 343 75 HOH TIP . J 5 HOH B 27 344 76 HOH TIP . J 5 HOH B 28 345 78 HOH TIP . J 5 HOH B 29 346 79 HOH TIP . J 5 HOH B 30 347 80 HOH TIP . J 5 HOH B 31 348 83 HOH TIP . J 5 HOH B 32 349 85 HOH TIP . J 5 HOH B 33 350 92 HOH TIP . J 5 HOH B 34 351 93 HOH TIP . J 5 HOH B 35 352 94 HOH TIP . J 5 HOH B 36 353 95 HOH TIP . J 5 HOH B 37 354 100 HOH TIP . J 5 HOH B 38 355 101 HOH TIP . J 5 HOH B 39 356 103 HOH TIP . J 5 HOH B 40 357 104 HOH TIP . J 5 HOH B 41 358 109 HOH TIP . J 5 HOH B 42 359 110 HOH TIP . J 5 HOH B 43 360 112 HOH TIP . J 5 HOH B 44 361 114 HOH TIP . J 5 HOH B 45 362 115 HOH TIP . J 5 HOH B 46 363 116 HOH TIP . J 5 HOH B 47 364 117 HOH TIP . J 5 HOH B 48 365 118 HOH TIP . J 5 HOH B 49 366 120 HOH TIP . J 5 HOH B 50 367 127 HOH TIP . J 5 HOH B 51 368 128 HOH TIP . J 5 HOH B 52 369 132 HOH TIP . J 5 HOH B 53 370 135 HOH TIP . J 5 HOH B 54 371 138 HOH TIP . J 5 HOH B 55 372 139 HOH TIP . J 5 HOH B 56 373 140 HOH TIP . J 5 HOH B 57 374 147 HOH TIP . J 5 HOH B 58 375 149 HOH TIP . J 5 HOH B 59 376 150 HOH TIP . J 5 HOH B 60 377 152 HOH TIP . J 5 HOH B 61 378 153 HOH TIP . J 5 HOH B 62 379 155 HOH TIP . J 5 HOH B 63 380 157 HOH TIP . J 5 HOH B 64 381 159 HOH TIP . J 5 HOH B 65 382 161 HOH TIP . J 5 HOH B 66 383 168 HOH TIP . J 5 HOH B 67 384 174 HOH TIP . J 5 HOH B 68 385 176 HOH TIP . J 5 HOH B 69 386 177 HOH TIP . J 5 HOH B 70 387 185 HOH TIP . J 5 HOH B 71 388 187 HOH TIP . J 5 HOH B 72 389 188 HOH TIP . J 5 HOH B 73 390 190 HOH TIP . J 5 HOH B 74 391 192 HOH TIP . J 5 HOH B 75 392 193 HOH TIP . J 5 HOH B 76 393 194 HOH TIP . J 5 HOH B 77 394 196 HOH TIP . J 5 HOH B 78 395 199 HOH TIP . J 5 HOH B 79 396 200 HOH TIP . J 5 HOH B 80 397 201 HOH TIP . J 5 HOH B 81 398 204 HOH TIP . J 5 HOH B 82 399 205 HOH TIP . J 5 HOH B 83 400 208 HOH TIP . J 5 HOH B 84 401 211 HOH TIP . J 5 HOH B 85 402 212 HOH TIP . J 5 HOH B 86 403 215 HOH TIP . J 5 HOH B 87 404 216 HOH TIP . J 5 HOH B 88 405 217 HOH TIP . J 5 HOH B 89 406 223 HOH TIP . J 5 HOH B 90 407 224 HOH TIP . J 5 HOH B 91 408 225 HOH TIP . J 5 HOH B 92 409 228 HOH TIP . J 5 HOH B 93 410 237 HOH TIP . J 5 HOH B 94 411 240 HOH TIP . J 5 HOH B 95 412 241 HOH TIP . J 5 HOH B 96 413 242 HOH TIP . J 5 HOH B 97 414 243 HOH TIP . J 5 HOH B 98 415 244 HOH TIP . J 5 HOH B 99 416 251 HOH TIP . J 5 HOH B 100 417 253 HOH TIP . J 5 HOH B 101 418 254 HOH TIP . J 5 HOH B 102 419 265 HOH TIP . J 5 HOH B 103 420 266 HOH TIP . J 5 HOH B 104 421 267 HOH TIP . J 5 HOH B 105 422 269 HOH TIP . J 5 HOH B 106 423 270 HOH TIP . J 5 HOH B 107 424 271 HOH TIP . J 5 HOH B 108 425 272 HOH TIP . J 5 HOH B 109 426 273 HOH TIP . J 5 HOH B 110 427 274 HOH TIP . J 5 HOH B 111 428 281 HOH TIP . J 5 HOH B 112 429 282 HOH TIP . J 5 HOH B 113 430 290 HOH TIP . J 5 HOH B 114 431 292 HOH TIP . J 5 HOH B 115 432 293 HOH TIP . J 5 HOH B 116 433 294 HOH TIP . J 5 HOH B 117 434 295 HOH TIP . J 5 HOH B 118 435 296 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . H 4 -14.059 -2.242 4.95 1 27.46 ? C1 MPD 5277 B 1 HETATM 2 C C2 MPD . . . H 4 -13.076 -2.158 3.811 1 29.77 ? C2 MPD 5277 B 1 HETATM 3 O O2 MPD . . . H 4 -12.225 -3.285 3.826 1 30.85 ? O2 MPD 5277 B 1 HETATM 4 C CM MPD . . . H 4 -13.727 -2.059 2.482 1 22.14 ? CM MPD 5277 B 1 HETATM 5 C C3 MPD . . . H 4 -12.334 -0.863 3.713 1 28.76 ? C3 MPD 5277 B 1 HETATM 6 C C4 MPD . . . H 4 -11.776 -0.279 4.907 1 34.78 ? C4 MPD 5277 B 1 HETATM 7 O O4 MPD . . . H 4 -10.77 -1.127 5.337 1 38.46 ? O4 MPD 5277 B 1 HETATM 8 C C5 MPD . . . H 4 -11.178 1.018 4.433 1 27.62 ? C5 MPD 5277 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #