data_3A59
#
_model_server_result.job_id            1yKjhzOW2uwylF7UJJiKqA 
_model_server_result.datetime_utc      '2024-10-10 08:19:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3a59 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":150}' 
#
_entry.id    3A59 
#
_exptl.entry_id    3A59 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3A59 
_cell.length_a            82.051 
_cell.length_b            82.051 
_cell.length_c            214.928 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3A59 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
PISA tetrameric 4 software_defined_assembly 5 
PISA tetrameric 4 software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J 1 1 
C,D,K,L 2 1 
E,F,M,N 3 1 
G,H,O,P 4 1 
A,B,C,D,I,J,K,L 5 1 
E,F,G,H,M,N,O,P 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 I FE HEM . A HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
metalc ? metalc2 B NE2 HIS 92 B HIS 92 1_555 J FE HEM . B HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc3 C NE2 HIS 87 C HIS 87 1_555 K FE HEM . C HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? 
metalc ? metalc4 D NE2 HIS 92 D HIS 92 1_555 L FE HEM . D HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc5 E NE2 HIS 87 E HIS 87 1_555 M FE HEM . E HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? 
metalc ? metalc6 F NE2 HIS 92 F HIS 92 1_555 N FE HEM . F HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc7 G NE2 HIS 87 G HIS 87 1_555 O FE HEM . G HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc8 H NE2 HIS 92 H HIS 92 1_555 P FE HEM . H HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     3A59 
_atom_sites.fract_transf_matrix[1][1]    0.012188 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012188 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004653 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 HEM A 1 150 150 HEM HEM . 
J 3 HEM B 1 150 150 HEM HEM . 
K 3 HEM C 1 150 150 HEM HEM . 
L 3 HEM D 1 150 150 HEM HEM . 
M 3 HEM E 1 150 150 HEM HEM . 
N 3 HEM F 1 150 150 HEM HEM . 
O 3 HEM G 1 150 150 HEM HEM . 
P 3 HEM H 1 150 150 HEM HEM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . K 3 21.783 6.209 15.153 1 39.54 ? CHA HEM 150 C 1 
HETATM 2 C CHB HEM . . . K 3 20.019 1.986 16.787 1 39.2 ? CHB HEM 150 C 1 
HETATM 3 C CHC HEM . . . K 3 17.635 1.477 12.6 1 39.37 ? CHC HEM 150 C 1 
HETATM 4 C CHD HEM . . . K 3 19.709 5.496 10.796 1 39.2 ? CHD HEM 150 C 1 
HETATM 5 C C1A HEM . . . K 3 21.656 5.019 15.85 1 39.61 ? C1A HEM 150 C 1 
HETATM 6 C C2A HEM . . . K 3 22.599 4.462 16.802 1 39.62 ? C2A HEM 150 C 1 
HETATM 7 C C3A HEM . . . K 3 22.109 3.309 17.246 1 39.37 ? C3A HEM 150 C 1 
HETATM 8 C C4A HEM . . . K 3 20.838 3.077 16.602 1 39.28 ? C4A HEM 150 C 1 
HETATM 9 C CMA HEM . . . K 3 22.78 2.379 18.272 1 39.83 ? CMA HEM 150 C 1 
HETATM 10 C CAA HEM . . . K 3 23.941 5.082 17.233 1 40.11 ? CAA HEM 150 C 1 
HETATM 11 C CBA HEM . . . K 3 23.742 5.822 18.55 1 41.33 ? CBA HEM 150 C 1 
HETATM 12 C CGA HEM . . . K 3 25.008 6.575 18.876 1 42.25 ? CGA HEM 150 C 1 
HETATM 13 O O1A HEM . . . K 3 25.066 7.198 19.989 1 42.87 ? O1A HEM 150 C 1 
HETATM 14 O O2A HEM . . . K 3 25.955 6.554 18.029 1 42.48 ? O2A HEM 150 C 1 
HETATM 15 C C1B HEM . . . K 3 19.139 1.529 15.836 1 39.06 ? C1B HEM 150 C 1 
HETATM 16 C C2B HEM . . . K 3 18.156 0.482 16.008 1 38.92 ? C2B HEM 150 C 1 
HETATM 17 C C3B HEM . . . K 3 17.499 0.345 14.853 1 39.15 ? C3B HEM 150 C 1 
HETATM 18 C C4B HEM . . . K 3 18.041 1.301 13.906 1 39.21 ? C4B HEM 150 C 1 
HETATM 19 C CMB HEM . . . K 3 17.921 -0.324 17.304 1 38.66 ? CMB HEM 150 C 1 
HETATM 20 C CAB HEM . . . K 3 16.361 -0.657 14.564 1 39.35 ? CAB HEM 150 C 1 
HETATM 21 C CBB HEM . . . K 3 15.082 -0.186 14.453 1 39.74 ? CBB HEM 150 C 1 
HETATM 22 C C1C HEM . . . K 3 17.907 2.576 11.806 1 39.52 ? C1C HEM 150 C 1 
HETATM 23 C C2C HEM . . . K 3 17.153 2.995 10.635 1 39.68 ? C2C HEM 150 C 1 
HETATM 24 C C3C HEM . . . K 3 17.72 4.096 10.141 1 39.13 ? C3C HEM 150 C 1 
HETATM 25 C C4C HEM . . . K 3 18.859 4.425 10.975 1 39.18 ? C4C HEM 150 C 1 
HETATM 26 C CMC HEM . . . K 3 15.903 2.288 10.059 1 40.39 ? CMC HEM 150 C 1 
HETATM 27 C CAC HEM . . . K 3 17.24 4.876 8.897 1 38.73 ? CAC HEM 150 C 1 
HETATM 28 C CBC HEM . . . K 3 17.286 4.289 7.697 1 38.56 ? CBC HEM 150 C 1 
HETATM 29 C C1D HEM . . . K 3 20.549 6.025 11.753 1 39.07 ? C1D HEM 150 C 1 
HETATM 30 C C2D HEM . . . K 3 21.545 7.048 11.526 1 38.77 ? C2D HEM 150 C 1 
HETATM 31 C C3D HEM . . . K 3 22.205 7.283 12.896 1 39.19 ? C3D HEM 150 C 1 
HETATM 32 C C4D HEM . . . K 3 21.533 6.372 13.805 1 39.23 ? C4D HEM 150 C 1 
HETATM 33 C CMD HEM . . . K 3 21.862 7.745 10.185 1 37.94 ? CMD HEM 150 C 1 
HETATM 34 C CAD HEM . . . K 3 23.348 8.277 13.222 1 39.59 ? CAD HEM 150 C 1 
HETATM 35 C CBD HEM . . . K 3 24.471 8.101 12.186 1 40.08 ? CBD HEM 150 C 1 
HETATM 36 C CGD HEM . . . K 3 25.816 8.561 12.712 1 40.28 ? CGD HEM 150 C 1 
HETATM 37 O O1D HEM . . . K 3 26.676 7.685 13.009 1 40.41 ? O1D HEM 150 C 1 
HETATM 38 O O2D HEM . . . K 3 26.041 9.798 12.825 1 40.24 ? O2D HEM 150 C 1 
HETATM 39 N NA HEM . . . K 3 20.592 4.139 15.75 1 39.36 ? NA HEM 150 C 1 
HETATM 40 N NB HEM . . . K 3 19.041 2.009 14.542 1 39.14 ? NB HEM 150 C 1 
HETATM 41 N NC HEM . . . K 3 18.942 3.477 11.985 1 39.31 ? NC HEM 150 C 1 
HETATM 42 N ND HEM . . . K 3 20.575 5.656 13.097 1 39.19 ? ND HEM 150 C 1 
HETATM 43 FE FE HEM . . . K 3 19.758 3.859 13.873 1 39.1 ? FE HEM 150 C 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#