data_3A62 # _model_server_result.job_id 8DdpS_Ru-xvnaoEFL24tgw _model_server_result.datetime_utc '2024-10-19 03:41:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3a62 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":400}' # _entry.id 3A62 # _exptl.entry_id 3A62 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 466.531 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description STAUROSPORINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3A62 _cell.length_a 68.742 _cell.length_b 68.742 _cell.length_c 144.589 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3A62 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 179 A HIS 251 1_555 A N TPO 180 A TPO 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C TPO 180 A TPO 252 1_555 A N PHE 181 A PHE 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 C MN MN . A MN 38 1_555 A SG CYS 168 A CYS 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc2 C MN MN . A MN 38 1_555 A ND1 HIS 179 A HIS 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc3 C MN MN . A MN 38 1_555 A SG CYS 182 A CYS 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? # _chem_comp.formula 'C28 H26 N4 O3' _chem_comp.formula_weight 466.531 _chem_comp.id STU _chem_comp.mon_nstd_flag . _chem_comp.name STAUROSPORINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C25 STU sing 290 n n O4 C21 STU sing 291 n n C25 C24 STU sing 292 n n C25 N3 STU sing 293 n n C25 H25 STU sing 294 n n C24 C23 STU sing 295 n n C24 H241 STU sing 296 n n C24 H242 STU sing 297 n n C23 C22 STU sing 298 n n C23 N4 STU sing 299 n n C23 H23 STU sing 300 n n C22 C21 STU sing 301 n n C22 O6 STU sing 302 n n C22 H22 STU sing 303 n n C21 C26 STU sing 304 n n C21 N2 STU sing 305 n n C26 H261 STU sing 306 n n C26 H262 STU sing 307 n n C26 H263 STU sing 308 n n N2 C18 STU sing 309 n y N2 C17 STU sing 310 n y C18 C19 STU doub 311 n y C18 C11 STU sing 312 n y C19 C6 STU sing 313 n y C19 N3 STU sing 314 n y C6 C7 STU doub 315 n y C6 C5 STU sing 316 n y C7 C10 STU sing 317 n y C7 C8 STU sing 318 n n C10 C11 STU doub 319 n y C10 C9 STU sing 320 n n C11 C12 STU sing 321 n y C12 C17 STU doub 322 n y C12 C13 STU sing 323 n y C17 C16 STU sing 324 n y C16 C15 STU doub 325 n y C16 H16 STU sing 326 n n C15 C14 STU sing 327 n y C15 H15 STU sing 328 n n C14 C13 STU doub 329 n y C14 H14 STU sing 330 n n C13 H13 STU sing 331 n n C9 N1 STU sing 332 n n C9 H91 STU sing 333 n n C9 H92 STU sing 334 n n N1 C8 STU sing 335 n n N1 HN1 STU sing 336 n n C8 O5 STU doub 337 n n C5 C20 STU doub 338 n y C5 C4 STU sing 339 n y C20 C1 STU sing 340 n y C20 N3 STU sing 341 n y C1 C2 STU doub 342 n y C1 H1 STU sing 343 n n C2 C3 STU sing 344 n y C2 H2 STU sing 345 n n C3 C4 STU doub 346 n y C3 H3 STU sing 347 n n C4 H4 STU sing 348 n n O6 C27 STU sing 349 n n C27 H271 STU sing 350 n n C27 H272 STU sing 351 n n C27 H273 STU sing 352 n n N4 C28 STU sing 353 n n N4 HN4 STU sing 354 n n C28 H281 STU sing 355 n n C28 H282 STU sing 356 n n C28 H283 STU sing 357 n n # _atom_sites.entry_id 3A62 _atom_sites.fract_transf_matrix[1][1] 0.014547 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014547 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006916 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 STU A 1 400 400 STU STU . C 3 MN A 1 38 38 MN MN . D 4 HOH A 1 1 1 HOH HOH . D 4 HOH A 2 2 2 HOH HOH . D 4 HOH A 3 3 3 HOH HOH . D 4 HOH A 4 4 4 HOH HOH . D 4 HOH A 5 5 5 HOH HOH . D 4 HOH A 6 6 6 HOH HOH . D 4 HOH A 7 7 7 HOH HOH . D 4 HOH A 8 8 8 HOH HOH . D 4 HOH A 9 9 9 HOH HOH . D 4 HOH A 10 10 10 HOH HOH . D 4 HOH A 11 11 11 HOH HOH . D 4 HOH A 12 12 12 HOH HOH . D 4 HOH A 13 13 13 HOH HOH . D 4 HOH A 14 14 14 HOH HOH . D 4 HOH A 15 15 15 HOH HOH . D 4 HOH A 16 16 16 HOH HOH . D 4 HOH A 17 17 17 HOH HOH . D 4 HOH A 18 18 18 HOH HOH . D 4 HOH A 19 19 19 HOH HOH . D 4 HOH A 20 20 20 HOH HOH . D 4 HOH A 21 21 21 HOH HOH . D 4 HOH A 22 22 22 HOH HOH . D 4 HOH A 23 23 23 HOH HOH . D 4 HOH A 24 24 24 HOH HOH . D 4 HOH A 25 25 25 HOH HOH . D 4 HOH A 26 26 26 HOH HOH . D 4 HOH A 27 27 27 HOH HOH . D 4 HOH A 28 28 28 HOH HOH . D 4 HOH A 29 29 29 HOH HOH . D 4 HOH A 30 30 30 HOH HOH . D 4 HOH A 31 31 31 HOH HOH . D 4 HOH A 32 32 32 HOH HOH . D 4 HOH A 33 33 33 HOH HOH . D 4 HOH A 34 34 34 HOH HOH . D 4 HOH A 35 35 35 HOH HOH . D 4 HOH A 36 36 36 HOH HOH . D 4 HOH A 37 37 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 STU . . . B 2 -22.379 20.628 -13.436 1 25.95 ? O4 STU 400 A 1 HETATM 2 C C25 STU . . . B 2 -21.436 20.762 -14.461 1 29.78 ? C25 STU 400 A 1 HETATM 3 C C24 STU . . . B 2 -20.129 20.004 -13.974 1 31.97 ? C24 STU 400 A 1 HETATM 4 C C23 STU . . . B 2 -20.295 19.327 -12.565 1 30.76 ? C23 STU 400 A 1 HETATM 5 C C22 STU . . . B 2 -20.808 20.311 -11.478 1 31.89 ? C22 STU 400 A 1 HETATM 6 C C21 STU . . . B 2 -22.242 20.767 -12.042 1 29.53 ? C21 STU 400 A 1 HETATM 7 C C26 STU . . . B 2 -23.346 19.812 -11.49 1 30.72 ? C26 STU 400 A 1 HETATM 8 N N2 STU . . . B 2 -22.479 22.24 -11.648 1 24.27 ? N2 STU 400 A 1 HETATM 9 C C18 STU . . . B 2 -22.089 23.301 -12.589 1 28.02 ? C18 STU 400 A 1 HETATM 10 C C19 STU . . . B 2 -21.495 23.273 -13.856 1 26.53 ? C19 STU 400 A 1 HETATM 11 C C6 STU . . . B 2 -21.183 24.49 -14.606 1 26.15 ? C6 STU 400 A 1 HETATM 12 C C7 STU . . . B 2 -21.576 25.753 -13.929 1 25.37 ? C7 STU 400 A 1 HETATM 13 C C10 STU . . . B 2 -22.15 25.784 -12.7 1 26.21 ? C10 STU 400 A 1 HETATM 14 C C11 STU . . . B 2 -22.448 24.561 -11.945 1 24.78 ? C11 STU 400 A 1 HETATM 15 C C12 STU . . . B 2 -22.995 24.269 -10.676 1 26.67 ? C12 STU 400 A 1 HETATM 16 C C17 STU . . . B 2 -23.029 22.828 -10.478 1 27.96 ? C17 STU 400 A 1 HETATM 17 C C16 STU . . . B 2 -23.555 22.293 -9.238 1 26.93 ? C16 STU 400 A 1 HETATM 18 C C15 STU . . . B 2 -24.031 23.14 -8.223 1 32.63 ? C15 STU 400 A 1 HETATM 19 C C14 STU . . . B 2 -24.012 24.604 -8.389 1 33.1 ? C14 STU 400 A 1 HETATM 20 C C13 STU . . . B 2 -23.488 25.122 -9.644 1 32.62 ? C13 STU 400 A 1 HETATM 21 C C9 STU . . . B 2 -22.416 27.212 -12.285 1 25.13 ? C9 STU 400 A 1 HETATM 22 N N1 STU . . . B 2 -21.897 27.88 -13.462 1 26.29 ? N1 STU 400 A 1 HETATM 23 C C8 STU . . . B 2 -21.402 27.132 -14.441 1 26.4 ? C8 STU 400 A 1 HETATM 24 O O5 STU . . . B 2 -20.921 27.495 -15.512 1 31.14 ? O5 STU 400 A 1 HETATM 25 C C5 STU . . . B 2 -20.566 24.13 -15.806 1 25.16 ? C5 STU 400 A 1 HETATM 26 C C20 STU . . . B 2 -20.496 22.68 -15.808 1 26.07 ? C20 STU 400 A 1 HETATM 27 C C1 STU . . . B 2 -19.896 21.947 -16.907 1 27.26 ? C1 STU 400 A 1 HETATM 28 C C2 STU . . . B 2 -19.365 22.693 -17.998 1 28.31 ? C2 STU 400 A 1 HETATM 29 C C3 STU . . . B 2 -19.428 24.156 -18.011 1 28.48 ? C3 STU 400 A 1 HETATM 30 C C4 STU . . . B 2 -20.022 24.844 -16.926 1 27.64 ? C4 STU 400 A 1 HETATM 31 N N3 STU . . . B 2 -21.063 22.206 -14.659 1 28.68 ? N3 STU 400 A 1 HETATM 32 O O6 STU . . . B 2 -19.844 21.412 -11.476 1 33.76 ? O6 STU 400 A 1 HETATM 33 C C27 STU . . . B 2 -19.515 21.829 -10.166 1 34.47 ? C27 STU 400 A 1 HETATM 34 N N4 STU . . . B 2 -18.888 18.695 -12.208 1 34.9 ? N4 STU 400 A 1 HETATM 35 C C28 STU . . . B 2 -19.107 17.377 -11.517 1 29.17 ? C28 STU 400 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #