data_3A7A # _model_server_result.job_id '_sHzWU48LEa479PicA-npg' _model_server_result.datetime_utc '2024-11-16 20:36:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3a7a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":402}' # _entry.id 3A7A # _exptl.entry_id 3A7A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3A7A _cell.length_a 70.013 _cell.length_b 102.016 _cell.length_c 159.934 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3A7A _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F 1 1 C,D,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E C1 OCT . A OCT 401 1_555 F O3P AMP . A AMP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale2 G C1 OCT . C OCT 401 1_555 H O3P AMP . C AMP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 3A7A _atom_sites.fract_transf_matrix[1][1] 0.014283 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009802 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006253 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 OCT A 1 401 401 OCT OCT . F 4 AMP A 1 402 402 AMP AMP . G 3 OCT C 1 401 401 OCT OCT . H 4 AMP C 1 402 402 AMP AMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . H 4 31.322 21.356 22.489 1 47.15 ? P AMP 402 C 1 HETATM 2 O O1P AMP . . . H 4 32.452 20.417 22.632 1 47.13 ? O1P AMP 402 C 1 HETATM 3 O O2P AMP . . . H 4 29.97 20.828 22.207 1 47.54 ? O2P AMP 402 C 1 HETATM 4 O O3P AMP . . . H 4 31.714 22.466 21.394 1 47.07 ? O3P AMP 402 C 1 HETATM 5 O O5' AMP . . . H 4 31.238 22.239 23.81 1 47.15 ? O5' AMP 402 C 1 HETATM 6 C C5' AMP . . . H 4 30.528 23.469 23.81 1 47.25 ? C5' AMP 402 C 1 HETATM 7 C C4' AMP . . . H 4 30.784 24.195 25.132 1 47.54 ? C4' AMP 402 C 1 HETATM 8 O O4' AMP . . . H 4 31.637 25.337 24.883 1 47.37 ? O4' AMP 402 C 1 HETATM 9 C C3' AMP . . . H 4 29.498 24.77 25.708 1 47.6 ? C3' AMP 402 C 1 HETATM 10 O O3' AMP . . . H 4 28.852 23.783 26.52 1 47.8 ? O3' AMP 402 C 1 HETATM 11 C C2' AMP . . . H 4 30.074 25.838 26.602 1 47.49 ? C2' AMP 402 C 1 HETATM 12 O O2' AMP . . . H 4 30.647 25.196 27.743 1 47.59 ? O2' AMP 402 C 1 HETATM 13 C C1' AMP . . . H 4 31.191 26.413 25.732 1 47.24 ? C1' AMP 402 C 1 HETATM 14 N N9 AMP . . . H 4 30.69 27.471 24.836 1 47.29 ? N9 AMP 402 C 1 HETATM 15 C C8 AMP . . . H 4 29.416 27.817 24.645 1 47.5 ? C8 AMP 402 C 1 HETATM 16 N N7 AMP . . . H 4 29.353 28.816 23.763 1 47.47 ? N7 AMP 402 C 1 HETATM 17 C C5 AMP . . . H 4 30.597 29.105 23.394 1 47.57 ? C5 AMP 402 C 1 HETATM 18 C C6 AMP . . . H 4 31.147 30.03 22.52 1 47.6 ? C6 AMP 402 C 1 HETATM 19 N N6 AMP . . . H 4 30.369 30.871 21.843 1 47.69 ? N6 AMP 402 C 1 HETATM 20 N N1 AMP . . . H 4 32.477 30.062 22.368 1 47.49 ? N1 AMP 402 C 1 HETATM 21 C C2 AMP . . . H 4 33.259 29.229 23.038 1 47.45 ? C2 AMP 402 C 1 HETATM 22 N N3 AMP . . . H 4 32.765 28.334 23.877 1 47.42 ? N3 AMP 402 C 1 HETATM 23 C C4 AMP . . . H 4 31.444 28.25 24.073 1 47.44 ? C4 AMP 402 C 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #