data_3A7E # _model_server_result.job_id AT3HWQD8vAEoPqsbZ-0AfA _model_server_result.datetime_utc '2024-10-16 10:25:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3a7e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":216}' # _entry.id 3A7E # _exptl.entry_id 3A7E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3A7E _cell.length_a 50.909 _cell.length_b 50.909 _cell.length_c 168.186 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3A7E _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 143 A ASP 141 1_555 B MG MG . A MG 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc2 A OD1 ASP 143 A ASP 141 1_555 B MG MG . A MG 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? metalc ? metalc3 A OD2 ASP 171 A ASP 169 1_555 B MG MG . A MG 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc4 A OD1 ASN 172 A ASN 170 1_555 B MG MG . A MG 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc5 B MG MG . A MG 215 1_555 D O2 DNC . A DNC 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc6 B MG MG . A MG 215 1_555 D O1 DNC . A DNC 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 295 n n N HN1 SAM sing 296 n n N HN2 SAM sing 297 n n CA C SAM sing 298 n n CA CB SAM sing 299 n n CA HA SAM sing 300 n n C O SAM doub 301 n n C OXT SAM sing 302 n n CB CG SAM sing 303 n n CB HB1 SAM sing 304 n n CB HB2 SAM sing 305 n n CG SD SAM sing 306 n n CG HG1 SAM sing 307 n n CG HG2 SAM sing 308 n n SD CE SAM sing 309 n n SD C5' SAM sing 310 n n CE HE1 SAM sing 311 n n CE HE2 SAM sing 312 n n CE HE3 SAM sing 313 n n C5' C4' SAM sing 314 n n C5' "H5'1" SAM sing 315 n n C5' "H5'2" SAM sing 316 n n C4' O4' SAM sing 317 n n C4' C3' SAM sing 318 n n C4' H4' SAM sing 319 n n O4' C1' SAM sing 320 n n C3' O3' SAM sing 321 n n C3' C2' SAM sing 322 n n C3' H3' SAM sing 323 n n O3' HO3' SAM sing 324 n n C2' O2' SAM sing 325 n n C2' C1' SAM sing 326 n n C2' H2' SAM sing 327 n n O2' HO2' SAM sing 328 n n C1' N9 SAM sing 329 n n C1' H1' SAM sing 330 n n N9 C8 SAM sing 331 n y N9 C4 SAM sing 332 n y C8 N7 SAM doub 333 n y C8 H8 SAM sing 334 n n N7 C5 SAM sing 335 n y C5 C6 SAM sing 336 n y C5 C4 SAM doub 337 n y C6 N6 SAM sing 338 n n C6 N1 SAM doub 339 n y N6 HN61 SAM sing 340 n n N6 HN62 SAM sing 341 n n N1 C2 SAM sing 342 n y C2 N3 SAM doub 343 n y C2 H2 SAM sing 344 n n N3 C4 SAM sing 345 n y # _atom_sites.entry_id 3A7E _atom_sites.fract_transf_matrix[1][1] 0.019643 _atom_sites.fract_transf_matrix[1][2] 0.011341 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022682 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005946 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 215 215 MG MG . C 3 SAM A 1 216 216 SAM SAM . D 4 DNC A 1 217 217 DNC DNC . E 5 HOH A 1 218 1 HOH HOH . E 5 HOH A 2 219 2 HOH HOH . E 5 HOH A 3 220 3 HOH HOH . E 5 HOH A 4 221 4 HOH HOH . E 5 HOH A 5 222 5 HOH HOH . E 5 HOH A 6 223 6 HOH HOH . E 5 HOH A 7 224 7 HOH HOH . E 5 HOH A 8 225 8 HOH HOH . E 5 HOH A 9 226 9 HOH HOH . E 5 HOH A 10 227 10 HOH HOH . E 5 HOH A 11 228 11 HOH HOH . E 5 HOH A 12 229 12 HOH HOH . E 5 HOH A 13 230 13 HOH HOH . E 5 HOH A 14 231 14 HOH HOH . E 5 HOH A 15 232 15 HOH HOH . E 5 HOH A 16 233 16 HOH HOH . E 5 HOH A 17 234 17 HOH HOH . E 5 HOH A 18 235 18 HOH HOH . E 5 HOH A 19 236 19 HOH HOH . E 5 HOH A 20 237 20 HOH HOH . E 5 HOH A 21 238 21 HOH HOH . E 5 HOH A 22 239 22 HOH HOH . E 5 HOH A 23 240 23 HOH HOH . E 5 HOH A 24 241 24 HOH HOH . E 5 HOH A 25 242 25 HOH HOH . E 5 HOH A 26 243 26 HOH HOH . E 5 HOH A 27 244 28 HOH HOH . E 5 HOH A 28 245 29 HOH HOH . E 5 HOH A 29 246 30 HOH HOH . E 5 HOH A 30 247 31 HOH HOH . E 5 HOH A 31 248 33 HOH HOH . E 5 HOH A 32 249 34 HOH HOH . E 5 HOH A 33 250 35 HOH HOH . E 5 HOH A 34 251 37 HOH HOH . E 5 HOH A 35 252 38 HOH HOH . E 5 HOH A 36 253 39 HOH HOH . E 5 HOH A 37 254 40 HOH HOH . E 5 HOH A 38 255 41 HOH HOH . E 5 HOH A 39 256 42 HOH HOH . E 5 HOH A 40 257 43 HOH HOH . E 5 HOH A 41 258 44 HOH HOH . E 5 HOH A 42 259 45 HOH HOH . E 5 HOH A 43 260 46 HOH HOH . E 5 HOH A 44 261 47 HOH HOH . E 5 HOH A 45 262 48 HOH HOH . E 5 HOH A 46 263 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . C 3 -15.581 14.361 15.57 1 29.9 ? N SAM 216 A 1 HETATM 2 C CA SAM . . . C 3 -15.702 12.942 15.138 1 30.29 ? CA SAM 216 A 1 HETATM 3 C C SAM . . . C 3 -17.116 12.448 15.397 1 30.49 ? C SAM 216 A 1 HETATM 4 O O SAM . . . C 3 -17.638 12.623 16.495 1 31.2 ? O SAM 216 A 1 HETATM 5 O OXT SAM . . . C 3 -17.769 11.867 14.531 1 30.66 ? OXT SAM 216 A 1 HETATM 6 C CB SAM . . . C 3 -14.735 12.03 15.887 1 30.54 ? CB SAM 216 A 1 HETATM 7 C CG SAM . . . C 3 -13.271 12.453 15.969 1 30.56 ? CG SAM 216 A 1 HETATM 8 S SD SAM . . . C 3 -12.281 11.148 16.746 1 30.87 ? SD SAM 216 A 1 HETATM 9 C CE SAM . . . C 3 -12.839 11.321 18.455 1 30.8 ? CE SAM 216 A 1 HETATM 10 C C5' SAM . . . C 3 -10.63 11.867 16.838 1 31.25 ? C5' SAM 216 A 1 HETATM 11 C C4' SAM . . . C 3 -10.1 12.182 15.449 1 34.02 ? C4' SAM 216 A 1 HETATM 12 O O4' SAM . . . C 3 -9.336 13.369 15.485 1 33.52 ? O4' SAM 216 A 1 HETATM 13 C C3' SAM . . . C 3 -9.212 11.075 14.906 1 33.96 ? C3' SAM 216 A 1 HETATM 14 O O3' SAM . . . C 3 -9.723 10.652 13.661 1 32.99 ? O3' SAM 216 A 1 HETATM 15 C C2' SAM . . . C 3 -7.853 11.72 14.733 1 32.92 ? C2' SAM 216 A 1 HETATM 16 O O2' SAM . . . C 3 -7.283 11.35 13.503 1 34.56 ? O2' SAM 216 A 1 HETATM 17 C C1' SAM . . . C 3 -8.143 13.21 14.752 1 32.27 ? C1' SAM 216 A 1 HETATM 18 N N9 SAM . . . C 3 -7.091 13.987 15.425 1 33.38 ? N9 SAM 216 A 1 HETATM 19 C C8 SAM . . . C 3 -6.38 13.644 16.551 1 32.57 ? C8 SAM 216 A 1 HETATM 20 N N7 SAM . . . C 3 -5.519 14.647 16.835 1 31.46 ? N7 SAM 216 A 1 HETATM 21 C C5 SAM . . . C 3 -5.677 15.628 15.912 1 30.81 ? C5 SAM 216 A 1 HETATM 22 C C6 SAM . . . C 3 -5.061 16.86 15.732 1 29 ? C6 SAM 216 A 1 HETATM 23 N N6 SAM . . . C 3 -4.115 17.277 16.567 1 29.01 ? N6 SAM 216 A 1 HETATM 24 N N1 SAM . . . C 3 -5.442 17.656 14.677 1 31.2 ? N1 SAM 216 A 1 HETATM 25 C C2 SAM . . . C 3 -6.428 17.231 13.804 1 33.36 ? C2 SAM 216 A 1 HETATM 26 N N3 SAM . . . C 3 -7.041 16.008 13.984 1 32.67 ? N3 SAM 216 A 1 HETATM 27 C C4 SAM . . . C 3 -6.667 15.224 15.023 1 32.08 ? C4 SAM 216 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #