data_3A7E # _model_server_result.job_id RZDX-yp6e3IQfOq7RkvtZQ _model_server_result.datetime_utc '2024-11-23 04:13:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3a7e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":217}' # _entry.id 3A7E # _exptl.entry_id 3A7E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 200.106 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,5-DINITROCATECHOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3A7E _cell.length_a 50.909 _cell.length_b 50.909 _cell.length_c 168.186 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3A7E _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 143 A ASP 141 1_555 B MG MG . A MG 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc2 A OD1 ASP 143 A ASP 141 1_555 B MG MG . A MG 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? metalc ? metalc3 A OD2 ASP 171 A ASP 169 1_555 B MG MG . A MG 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc4 A OD1 ASN 172 A ASN 170 1_555 B MG MG . A MG 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc5 B MG MG . A MG 215 1_555 D O2 DNC . A DNC 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc6 B MG MG . A MG 215 1_555 D O1 DNC . A DNC 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? # _chem_comp.formula 'C6 H4 N2 O6' _chem_comp.formula_weight 200.106 _chem_comp.id DNC _chem_comp.mon_nstd_flag . _chem_comp.name 3,5-DINITROCATECHOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 DNC sing 83 n n C1 C2 DNC doub 84 n y C1 C6 DNC sing 85 n y O1 HO1 DNC sing 86 n n C2 O2 DNC sing 87 n n C2 C3 DNC sing 88 n y O2 HO2 DNC sing 89 n n C3 N1 DNC sing 90 n n C3 C4 DNC doub 91 n y N1 O3 DNC sing 92 n n N1 O4 DNC doub 93 n n C4 C5 DNC sing 94 n y C4 H4 DNC sing 95 n n C5 N2 DNC sing 96 n n C5 C6 DNC doub 97 n y N2 O5 DNC sing 98 n n N2 O6 DNC doub 99 n n C6 H6 DNC sing 100 n n # _atom_sites.entry_id 3A7E _atom_sites.fract_transf_matrix[1][1] 0.019643 _atom_sites.fract_transf_matrix[1][2] 0.011341 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022682 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005946 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 215 215 MG MG . C 3 SAM A 1 216 216 SAM SAM . D 4 DNC A 1 217 217 DNC DNC . E 5 HOH A 1 218 1 HOH HOH . E 5 HOH A 2 219 2 HOH HOH . E 5 HOH A 3 220 3 HOH HOH . E 5 HOH A 4 221 4 HOH HOH . E 5 HOH A 5 222 5 HOH HOH . E 5 HOH A 6 223 6 HOH HOH . E 5 HOH A 7 224 7 HOH HOH . E 5 HOH A 8 225 8 HOH HOH . E 5 HOH A 9 226 9 HOH HOH . E 5 HOH A 10 227 10 HOH HOH . E 5 HOH A 11 228 11 HOH HOH . E 5 HOH A 12 229 12 HOH HOH . E 5 HOH A 13 230 13 HOH HOH . E 5 HOH A 14 231 14 HOH HOH . E 5 HOH A 15 232 15 HOH HOH . E 5 HOH A 16 233 16 HOH HOH . E 5 HOH A 17 234 17 HOH HOH . E 5 HOH A 18 235 18 HOH HOH . E 5 HOH A 19 236 19 HOH HOH . E 5 HOH A 20 237 20 HOH HOH . E 5 HOH A 21 238 21 HOH HOH . E 5 HOH A 22 239 22 HOH HOH . E 5 HOH A 23 240 23 HOH HOH . E 5 HOH A 24 241 24 HOH HOH . E 5 HOH A 25 242 25 HOH HOH . E 5 HOH A 26 243 26 HOH HOH . E 5 HOH A 27 244 28 HOH HOH . E 5 HOH A 28 245 29 HOH HOH . E 5 HOH A 29 246 30 HOH HOH . E 5 HOH A 30 247 31 HOH HOH . E 5 HOH A 31 248 33 HOH HOH . E 5 HOH A 32 249 34 HOH HOH . E 5 HOH A 33 250 35 HOH HOH . E 5 HOH A 34 251 37 HOH HOH . E 5 HOH A 35 252 38 HOH HOH . E 5 HOH A 36 253 39 HOH HOH . E 5 HOH A 37 254 40 HOH HOH . E 5 HOH A 38 255 41 HOH HOH . E 5 HOH A 39 256 42 HOH HOH . E 5 HOH A 40 257 43 HOH HOH . E 5 HOH A 41 258 44 HOH HOH . E 5 HOH A 42 259 45 HOH HOH . E 5 HOH A 43 260 46 HOH HOH . E 5 HOH A 44 261 47 HOH HOH . E 5 HOH A 45 262 48 HOH HOH . E 5 HOH A 46 263 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DNC . . . D 4 -14.571 9.211 22.224 1 37.89 ? C1 DNC 217 A 1 HETATM 2 O O1 DNC . . . D 4 -15.825 9.74 22.135 1 37.18 ? O1 DNC 217 A 1 HETATM 3 C C2 DNC . . . D 4 -13.438 9.898 21.572 1 37.42 ? C2 DNC 217 A 1 HETATM 4 O O2 DNC . . . D 4 -13.641 11.056 20.886 1 39.91 ? O2 DNC 217 A 1 HETATM 5 C C3 DNC . . . D 4 -12.09 9.297 21.692 1 36.96 ? C3 DNC 217 A 1 HETATM 6 N N1 DNC . . . D 4 -10.989 9.903 21.085 1 34.13 ? N1 DNC 217 A 1 HETATM 7 O O3 DNC . . . D 4 -10.052 9.225 20.717 1 30.25 ? O3 DNC 217 A 1 HETATM 8 O O4 DNC . . . D 4 -10.969 11.106 20.905 1 36.93 ? O4 DNC 217 A 1 HETATM 9 C C4 DNC . . . D 4 -11.941 8.115 22.408 1 39.96 ? C4 DNC 217 A 1 HETATM 10 C C5 DNC . . . D 4 -13.037 7.495 23.014 1 41.53 ? C5 DNC 217 A 1 HETATM 11 N N2 DNC . . . D 4 -12.834 6.302 23.73 1 40.88 ? N2 DNC 217 A 1 HETATM 12 O O5 DNC . . . D 4 -12.149 5.413 23.252 1 40.36 ? O5 DNC 217 A 1 HETATM 13 O O6 DNC . . . D 4 -13.34 6.151 24.83 1 40.03 ? O6 DNC 217 A 1 HETATM 14 C C6 DNC . . . D 4 -14.326 8.034 22.924 1 40.26 ? C6 DNC 217 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 368 _model_server_stats.encode_time_ms 29 _model_server_stats.element_count 14 #