data_3A82 # _model_server_result.job_id zMI_m_lxLEg9XzOw5bXyXQ _model_server_result.datetime_utc '2024-11-07 07:44:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3a82 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":4}' # _entry.id 3A82 # _exptl.entry_id 3A82 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3A82 _cell.length_a 54.203 _cell.length_b 58.281 _cell.length_c 66.815 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3A82 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 25 1_555 A SG CYS 137 A CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 25 A CYS 43 1_555 A SG CYS 41 A CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 109 A CYS 127 1_555 A SG CYS 210 A CYS 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf4 A SG CYS 116 A CYS 134 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 148 A CYS 166 1_555 A SG CYS 162 A CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc1 B CA CA . A CA 1 1_555 A OE1 GLU 52 A GLU 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc2 B CA CA . A CA 1 1_555 A O ASN 54 A ASN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc3 B CA CA . A CA 1 1_555 A O VAL 57 A VAL 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc4 B CA CA . A CA 1 1_555 A OE2 GLU 62 A GLU 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc5 B CA CA . A CA 1 1_555 G O HOH . A HOH 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc6 B CA CA . A CA 1 1_555 G O HOH . A HOH 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3A82 _atom_sites.fract_transf_matrix[1][1] 0.018449 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017158 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014967 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 1 1 CA CA . C 3 SO4 A 1 2 2 SO4 SO4 . D 3 SO4 A 1 3 3 SO4 SO4 . E 4 GOL A 1 4 4 GOL GOL . F 5 O09 A 1 5 5 O09 O09 . G 6 HOH A 1 6 6 HOH HOH . G 6 HOH A 2 7 7 HOH HOH . G 6 HOH A 3 8 8 HOH HOH . G 6 HOH A 4 9 9 HOH HOH . G 6 HOH A 5 10 10 HOH HOH . G 6 HOH A 6 11 11 HOH HOH . G 6 HOH A 7 12 12 HOH HOH . G 6 HOH A 8 13 13 HOH HOH . G 6 HOH A 9 14 14 HOH HOH . G 6 HOH A 10 15 15 HOH HOH . G 6 HOH A 11 16 16 HOH HOH . G 6 HOH A 12 17 17 HOH HOH . G 6 HOH A 13 18 18 HOH HOH . G 6 HOH A 14 242 242 HOH HOH . G 6 HOH A 15 243 243 HOH HOH . G 6 HOH A 16 244 244 HOH HOH . G 6 HOH A 17 245 245 HOH HOH . G 6 HOH A 18 246 246 HOH HOH . G 6 HOH A 19 247 247 HOH HOH . G 6 HOH A 20 248 1 HOH HOH . G 6 HOH A 21 249 2 HOH HOH . G 6 HOH A 22 250 3 HOH HOH . G 6 HOH A 23 251 4 HOH HOH . G 6 HOH A 24 252 5 HOH HOH . G 6 HOH A 25 253 19 HOH HOH . G 6 HOH A 26 254 20 HOH HOH . G 6 HOH A 27 255 21 HOH HOH . G 6 HOH A 28 256 22 HOH HOH . G 6 HOH A 29 257 23 HOH HOH . G 6 HOH A 30 258 24 HOH HOH . G 6 HOH A 31 259 25 HOH HOH . G 6 HOH A 32 260 26 HOH HOH . G 6 HOH A 33 261 27 HOH HOH . G 6 HOH A 34 262 28 HOH HOH . G 6 HOH A 35 263 29 HOH HOH . G 6 HOH A 36 264 30 HOH HOH . G 6 HOH A 37 265 31 HOH HOH . G 6 HOH A 38 266 32 HOH HOH . G 6 HOH A 39 267 33 HOH HOH . G 6 HOH A 40 268 34 HOH HOH . G 6 HOH A 41 269 35 HOH HOH . G 6 HOH A 42 270 36 HOH HOH . G 6 HOH A 43 271 37 HOH HOH . G 6 HOH A 44 272 38 HOH HOH . G 6 HOH A 45 273 39 HOH HOH . G 6 HOH A 46 274 40 HOH HOH . G 6 HOH A 47 275 41 HOH HOH . G 6 HOH A 48 276 42 HOH HOH . G 6 HOH A 49 277 43 HOH HOH . G 6 HOH A 50 278 44 HOH HOH . G 6 HOH A 51 279 45 HOH HOH . G 6 HOH A 52 280 46 HOH HOH . G 6 HOH A 53 281 47 HOH HOH . G 6 HOH A 54 282 48 HOH HOH . G 6 HOH A 55 283 49 HOH HOH . G 6 HOH A 56 284 50 HOH HOH . G 6 HOH A 57 285 51 HOH HOH . G 6 HOH A 58 286 52 HOH HOH . G 6 HOH A 59 287 53 HOH HOH . G 6 HOH A 60 288 54 HOH HOH . G 6 HOH A 61 289 55 HOH HOH . G 6 HOH A 62 290 56 HOH HOH . G 6 HOH A 63 291 57 HOH HOH . G 6 HOH A 64 292 58 HOH HOH . G 6 HOH A 65 293 59 HOH HOH . G 6 HOH A 66 294 60 HOH HOH . G 6 HOH A 67 295 61 HOH HOH . G 6 HOH A 68 296 62 HOH HOH . G 6 HOH A 69 297 63 HOH HOH . G 6 HOH A 70 298 64 HOH HOH . G 6 HOH A 71 299 65 HOH HOH . G 6 HOH A 72 300 66 HOH HOH . G 6 HOH A 73 301 67 HOH HOH . G 6 HOH A 74 302 68 HOH HOH . G 6 HOH A 75 303 69 HOH HOH . G 6 HOH A 76 304 70 HOH HOH . G 6 HOH A 77 305 71 HOH HOH . G 6 HOH A 78 306 72 HOH HOH . G 6 HOH A 79 307 73 HOH HOH . G 6 HOH A 80 308 74 HOH HOH . G 6 HOH A 81 309 75 HOH HOH . G 6 HOH A 82 310 76 HOH HOH . G 6 HOH A 83 311 77 HOH HOH . G 6 HOH A 84 312 78 HOH HOH . G 6 HOH A 85 313 79 HOH HOH . G 6 HOH A 86 314 80 HOH HOH . G 6 HOH A 87 315 81 HOH HOH . G 6 HOH A 88 316 82 HOH HOH . G 6 HOH A 89 317 83 HOH HOH . G 6 HOH A 90 318 84 HOH HOH . G 6 HOH A 91 319 85 HOH HOH . G 6 HOH A 92 320 86 HOH HOH . G 6 HOH A 93 321 87 HOH HOH . G 6 HOH A 94 322 88 HOH HOH . G 6 HOH A 95 323 89 HOH HOH . G 6 HOH A 96 324 90 HOH HOH . G 6 HOH A 97 325 91 HOH HOH . G 6 HOH A 98 326 92 HOH HOH . G 6 HOH A 99 327 93 HOH HOH . G 6 HOH A 100 328 94 HOH HOH . G 6 HOH A 101 329 95 HOH HOH . G 6 HOH A 102 330 96 HOH HOH . G 6 HOH A 103 331 97 HOH HOH . G 6 HOH A 104 332 98 HOH HOH . G 6 HOH A 105 333 99 HOH HOH . G 6 HOH A 106 334 100 HOH HOH . G 6 HOH A 107 335 101 HOH HOH . G 6 HOH A 108 336 102 HOH HOH . G 6 HOH A 109 337 103 HOH HOH . G 6 HOH A 110 338 104 HOH HOH . G 6 HOH A 111 339 105 HOH HOH . G 6 HOH A 112 340 106 HOH HOH . G 6 HOH A 113 341 107 HOH HOH . G 6 HOH A 114 342 108 HOH HOH . G 6 HOH A 115 343 109 HOH HOH . G 6 HOH A 116 344 110 HOH HOH . G 6 HOH A 117 345 111 HOH HOH . G 6 HOH A 118 346 112 HOH HOH . G 6 HOH A 119 347 113 HOH HOH . G 6 HOH A 120 348 114 HOH HOH . G 6 HOH A 121 349 115 HOH HOH . G 6 HOH A 122 350 116 HOH HOH . G 6 HOH A 123 351 117 HOH HOH . G 6 HOH A 124 352 118 HOH HOH . G 6 HOH A 125 353 119 HOH HOH . G 6 HOH A 126 354 120 HOH HOH . G 6 HOH A 127 355 121 HOH HOH . G 6 HOH A 128 356 122 HOH HOH . G 6 HOH A 129 357 123 HOH HOH . G 6 HOH A 130 358 124 HOH HOH . G 6 HOH A 131 359 125 HOH HOH . G 6 HOH A 132 360 126 HOH HOH . G 6 HOH A 133 361 127 HOH HOH . G 6 HOH A 134 362 128 HOH HOH . G 6 HOH A 135 363 129 HOH HOH . G 6 HOH A 136 364 130 HOH HOH . G 6 HOH A 137 365 131 HOH HOH . G 6 HOH A 138 366 132 HOH HOH . G 6 HOH A 139 367 133 HOH HOH . G 6 HOH A 140 368 134 HOH HOH . G 6 HOH A 141 369 135 HOH HOH . G 6 HOH A 142 370 136 HOH HOH . G 6 HOH A 143 371 137 HOH HOH . G 6 HOH A 144 372 138 HOH HOH . G 6 HOH A 145 373 139 HOH HOH . G 6 HOH A 146 374 140 HOH HOH . G 6 HOH A 147 375 141 HOH HOH . G 6 HOH A 148 376 142 HOH HOH . G 6 HOH A 149 377 143 HOH HOH . G 6 HOH A 150 378 145 HOH HOH . G 6 HOH A 151 379 146 HOH HOH . G 6 HOH A 152 380 147 HOH HOH . G 6 HOH A 153 381 148 HOH HOH . G 6 HOH A 154 382 149 HOH HOH . G 6 HOH A 155 383 150 HOH HOH . G 6 HOH A 156 384 151 HOH HOH . G 6 HOH A 157 385 152 HOH HOH . G 6 HOH A 158 386 153 HOH HOH . G 6 HOH A 159 387 154 HOH HOH . G 6 HOH A 160 388 155 HOH HOH . G 6 HOH A 161 389 156 HOH HOH . G 6 HOH A 162 390 158 HOH HOH . G 6 HOH A 163 391 159 HOH HOH . G 6 HOH A 164 392 160 HOH HOH . G 6 HOH A 165 393 161 HOH HOH . G 6 HOH A 166 394 162 HOH HOH . G 6 HOH A 167 395 163 HOH HOH . G 6 HOH A 168 396 164 HOH HOH . G 6 HOH A 169 397 165 HOH HOH . G 6 HOH A 170 398 166 HOH HOH . G 6 HOH A 171 399 167 HOH HOH . G 6 HOH A 172 400 168 HOH HOH . G 6 HOH A 173 401 169 HOH HOH . G 6 HOH A 174 402 170 HOH HOH . G 6 HOH A 175 403 171 HOH HOH . G 6 HOH A 176 404 172 HOH HOH . G 6 HOH A 177 405 173 HOH HOH . G 6 HOH A 178 406 174 HOH HOH . G 6 HOH A 179 407 175 HOH HOH . G 6 HOH A 180 408 176 HOH HOH . G 6 HOH A 181 409 177 HOH HOH . G 6 HOH A 182 410 178 HOH HOH . G 6 HOH A 183 411 179 HOH HOH . G 6 HOH A 184 412 180 HOH HOH . G 6 HOH A 185 413 181 HOH HOH . G 6 HOH A 186 414 182 HOH HOH . G 6 HOH A 187 415 183 HOH HOH . G 6 HOH A 188 416 184 HOH HOH . G 6 HOH A 189 417 185 HOH HOH . G 6 HOH A 190 418 186 HOH HOH . G 6 HOH A 191 419 187 HOH HOH . G 6 HOH A 192 420 188 HOH HOH . G 6 HOH A 193 421 189 HOH HOH . G 6 HOH A 194 422 190 HOH HOH . G 6 HOH A 195 423 191 HOH HOH . G 6 HOH A 196 424 192 HOH HOH . G 6 HOH A 197 425 193 HOH HOH . G 6 HOH A 198 426 194 HOH HOH . G 6 HOH A 199 427 195 HOH HOH . G 6 HOH A 200 428 196 HOH HOH . G 6 HOH A 201 429 197 HOH HOH . G 6 HOH A 202 430 198 HOH HOH . G 6 HOH A 203 431 199 HOH HOH . G 6 HOH A 204 432 200 HOH HOH . G 6 HOH A 205 433 201 HOH HOH . G 6 HOH A 206 434 202 HOH HOH . G 6 HOH A 207 435 203 HOH HOH . G 6 HOH A 208 436 204 HOH HOH . G 6 HOH A 209 437 205 HOH HOH . G 6 HOH A 210 438 206 HOH HOH . G 6 HOH A 211 439 207 HOH HOH . G 6 HOH A 212 440 208 HOH HOH . G 6 HOH A 213 441 209 HOH HOH . G 6 HOH A 214 442 210 HOH HOH . G 6 HOH A 215 443 211 HOH HOH . G 6 HOH A 216 444 212 HOH HOH . G 6 HOH A 217 445 213 HOH HOH . G 6 HOH A 218 446 214 HOH HOH . G 6 HOH A 219 447 215 HOH HOH . G 6 HOH A 220 448 216 HOH HOH . G 6 HOH A 221 449 217 HOH HOH . G 6 HOH A 222 450 218 HOH HOH . G 6 HOH A 223 451 219 HOH HOH . G 6 HOH A 224 452 220 HOH HOH . G 6 HOH A 225 453 221 HOH HOH . G 6 HOH A 226 454 222 HOH HOH . G 6 HOH A 227 455 223 HOH HOH . G 6 HOH A 228 456 224 HOH HOH . G 6 HOH A 229 457 225 HOH HOH . G 6 HOH A 230 458 226 HOH HOH . G 6 HOH A 231 459 227 HOH HOH . G 6 HOH A 232 460 228 HOH HOH . G 6 HOH A 233 461 229 HOH HOH . G 6 HOH A 234 462 230 HOH HOH . G 6 HOH A 235 463 231 HOH HOH . G 6 HOH A 236 464 232 HOH HOH . G 6 HOH A 237 465 233 HOH HOH . G 6 HOH A 238 466 234 HOH HOH . G 6 HOH A 239 467 235 HOH HOH . G 6 HOH A 240 468 236 HOH HOH . G 6 HOH A 241 469 237 HOH HOH . G 6 HOH A 242 470 238 HOH HOH . G 6 HOH A 243 471 239 HOH HOH . G 6 HOH A 244 472 240 HOH HOH . G 6 HOH A 245 473 241 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 -3.759 -2.758 -10.303 1 35.55 ? C1 GOL 4 A 1 HETATM 2 O O1 GOL . . . E 4 -2.469 -3.316 -10.451 1 29.67 ? O1 GOL 4 A 1 HETATM 3 C C2 GOL . . . E 4 -4.846 -3.829 -10.358 1 36.75 ? C2 GOL 4 A 1 HETATM 4 O O2 GOL . . . E 4 -5.264 -4.011 -11.693 1 38.8 ? O2 GOL 4 A 1 HETATM 5 C C3 GOL . . . E 4 -6.049 -3.387 -9.538 1 37.81 ? C3 GOL 4 A 1 HETATM 6 O O3 GOL . . . E 4 -7.239 -3.767 -10.199 1 38.99 ? O3 GOL 4 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #