data_3A8C # _model_server_result.job_id '_rVlaZKkbLxQFUBMWXzOgA' _model_server_result.datetime_utc '2024-11-07 10:19:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3a8c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2}' # _entry.id 3A8C # _exptl.entry_id 3A8C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.213 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(E)-2-(4-carbamimidoylbenzylideneaminooxy)acetic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3A8C _cell.length_a 53.852 _cell.length_b 56.913 _cell.length_c 66.17 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3A8C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 25 1_555 A SG CYS 137 A CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 25 A CYS 43 1_555 A SG CYS 41 A CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 A SG CYS 109 A CYS 127 1_555 A SG CYS 210 A CYS 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 116 A CYS 134 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 A SG CYS 148 A CYS 166 1_555 A SG CYS 162 A CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc1 B CA CA . A CA 1 1_555 A OE1 GLU 52 A GLU 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc2 B CA CA . A CA 1 1_555 A O ASN 54 A ASN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc3 B CA CA . A CA 1 1_555 A O VAL 57 A VAL 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc4 B CA CA . A CA 1 1_555 A OE2 GLU 62 A GLU 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc5 B CA CA . A CA 1 1_555 D O HOH . A HOH 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc6 B CA CA . A CA 1 1_555 D O HOH . A HOH 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? # _chem_comp.formula 'C10 H11 N3 O3' _chem_comp.formula_weight 221.213 _chem_comp.id O09 _chem_comp.mon_nstd_flag . _chem_comp.name '(E)-2-(4-carbamimidoylbenzylideneaminooxy)acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C8 O09 doub 237 n n C8 O2 O09 sing 238 n n C8 C7 O09 sing 239 n n C7 O1 O09 sing 240 n n O1 N2 O09 sing 241 n n N2 C6 O09 doub 242 n n C6 C5 O09 sing 243 e n C5 C4 O09 doub 244 n y C5 C9 O09 sing 245 n y C4 C3 O09 sing 246 n y C9 C10 O09 doub 247 n y C3 C2 O09 doub 248 n y C10 C2 O09 sing 249 n y C2 C1 O09 sing 250 n n N1 C1 O09 sing 251 n n C1 N3 O09 doub 252 n n N1 HN1 O09 sing 253 n n N1 HN1A O09 sing 254 n n O2 HO2 O09 sing 255 n n C3 H3 O09 sing 256 n n N3 HN3 O09 sing 257 n n C4 H4 O09 sing 258 n n C6 H6 O09 sing 259 n n C7 H7 O09 sing 260 n n C7 H7A O09 sing 261 n n C9 H9 O09 sing 262 n n C10 H10 O09 sing 263 n n # _atom_sites.entry_id 3A8C _atom_sites.fract_transf_matrix[1][1] 0.018569 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017571 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015113 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 1 1 CA CA . C 3 O09 A 1 2 2 O09 O09 . D 4 HOH A 1 3 3 HOH HOH . D 4 HOH A 2 4 4 HOH HOH . D 4 HOH A 3 5 5 HOH HOH . D 4 HOH A 4 6 6 HOH HOH . D 4 HOH A 5 7 7 HOH HOH . D 4 HOH A 6 8 8 HOH HOH . D 4 HOH A 7 9 9 HOH HOH . D 4 HOH A 8 10 10 HOH HOH . D 4 HOH A 9 11 11 HOH HOH . D 4 HOH A 10 12 12 HOH HOH . D 4 HOH A 11 13 13 HOH HOH . D 4 HOH A 12 14 14 HOH HOH . D 4 HOH A 13 15 15 HOH HOH . D 4 HOH A 14 16 16 HOH HOH . D 4 HOH A 15 17 17 HOH HOH . D 4 HOH A 16 18 18 HOH HOH . D 4 HOH A 17 242 1 HOH HOH . D 4 HOH A 18 243 2 HOH HOH . D 4 HOH A 19 244 19 HOH HOH . D 4 HOH A 20 245 20 HOH HOH . D 4 HOH A 21 246 21 HOH HOH . D 4 HOH A 22 247 22 HOH HOH . D 4 HOH A 23 248 23 HOH HOH . D 4 HOH A 24 249 24 HOH HOH . D 4 HOH A 25 250 25 HOH HOH . D 4 HOH A 26 251 26 HOH HOH . D 4 HOH A 27 252 27 HOH HOH . D 4 HOH A 28 253 28 HOH HOH . D 4 HOH A 29 254 29 HOH HOH . D 4 HOH A 30 255 30 HOH HOH . D 4 HOH A 31 256 31 HOH HOH . D 4 HOH A 32 257 32 HOH HOH . D 4 HOH A 33 258 33 HOH HOH . D 4 HOH A 34 259 34 HOH HOH . D 4 HOH A 35 260 35 HOH HOH . D 4 HOH A 36 261 36 HOH HOH . D 4 HOH A 37 262 37 HOH HOH . D 4 HOH A 38 263 38 HOH HOH . D 4 HOH A 39 264 39 HOH HOH . D 4 HOH A 40 265 40 HOH HOH . D 4 HOH A 41 266 41 HOH HOH . D 4 HOH A 42 267 42 HOH HOH . D 4 HOH A 43 268 43 HOH HOH . D 4 HOH A 44 269 44 HOH HOH . D 4 HOH A 45 270 45 HOH HOH . D 4 HOH A 46 271 46 HOH HOH . D 4 HOH A 47 272 47 HOH HOH . D 4 HOH A 48 273 48 HOH HOH . D 4 HOH A 49 274 49 HOH HOH . D 4 HOH A 50 275 50 HOH HOH . D 4 HOH A 51 276 51 HOH HOH . D 4 HOH A 52 277 52 HOH HOH . D 4 HOH A 53 278 53 HOH HOH . D 4 HOH A 54 279 54 HOH HOH . D 4 HOH A 55 280 55 HOH HOH . D 4 HOH A 56 281 56 HOH HOH . D 4 HOH A 57 282 57 HOH HOH . D 4 HOH A 58 283 58 HOH HOH . D 4 HOH A 59 284 59 HOH HOH . D 4 HOH A 60 285 60 HOH HOH . D 4 HOH A 61 286 61 HOH HOH . D 4 HOH A 62 287 62 HOH HOH . D 4 HOH A 63 288 63 HOH HOH . D 4 HOH A 64 289 64 HOH HOH . D 4 HOH A 65 290 65 HOH HOH . D 4 HOH A 66 291 66 HOH HOH . D 4 HOH A 67 292 67 HOH HOH . D 4 HOH A 68 293 68 HOH HOH . D 4 HOH A 69 294 69 HOH HOH . D 4 HOH A 70 295 70 HOH HOH . D 4 HOH A 71 296 71 HOH HOH . D 4 HOH A 72 297 72 HOH HOH . D 4 HOH A 73 298 73 HOH HOH . D 4 HOH A 74 299 74 HOH HOH . D 4 HOH A 75 300 75 HOH HOH . D 4 HOH A 76 301 76 HOH HOH . D 4 HOH A 77 302 77 HOH HOH . D 4 HOH A 78 303 78 HOH HOH . D 4 HOH A 79 304 79 HOH HOH . D 4 HOH A 80 305 80 HOH HOH . D 4 HOH A 81 306 81 HOH HOH . D 4 HOH A 82 307 82 HOH HOH . D 4 HOH A 83 308 83 HOH HOH . D 4 HOH A 84 309 84 HOH HOH . D 4 HOH A 85 310 85 HOH HOH . D 4 HOH A 86 311 86 HOH HOH . D 4 HOH A 87 312 87 HOH HOH . D 4 HOH A 88 313 88 HOH HOH . D 4 HOH A 89 314 89 HOH HOH . D 4 HOH A 90 315 90 HOH HOH . D 4 HOH A 91 316 91 HOH HOH . D 4 HOH A 92 317 92 HOH HOH . D 4 HOH A 93 318 93 HOH HOH . D 4 HOH A 94 319 94 HOH HOH . D 4 HOH A 95 320 95 HOH HOH . D 4 HOH A 96 321 96 HOH HOH . D 4 HOH A 97 322 97 HOH HOH . D 4 HOH A 98 323 98 HOH HOH . D 4 HOH A 99 324 99 HOH HOH . D 4 HOH A 100 325 100 HOH HOH . D 4 HOH A 101 326 101 HOH HOH . D 4 HOH A 102 327 102 HOH HOH . D 4 HOH A 103 328 103 HOH HOH . D 4 HOH A 104 329 104 HOH HOH . D 4 HOH A 105 330 105 HOH HOH . D 4 HOH A 106 331 106 HOH HOH . D 4 HOH A 107 332 107 HOH HOH . D 4 HOH A 108 333 108 HOH HOH . D 4 HOH A 109 334 109 HOH HOH . D 4 HOH A 110 335 110 HOH HOH . D 4 HOH A 111 336 111 HOH HOH . D 4 HOH A 112 337 112 HOH HOH . D 4 HOH A 113 338 113 HOH HOH . D 4 HOH A 114 339 114 HOH HOH . D 4 HOH A 115 340 115 HOH HOH . D 4 HOH A 116 341 116 HOH HOH . D 4 HOH A 117 342 117 HOH HOH . D 4 HOH A 118 343 118 HOH HOH . D 4 HOH A 119 344 119 HOH HOH . D 4 HOH A 120 345 120 HOH HOH . D 4 HOH A 121 346 121 HOH HOH . D 4 HOH A 122 347 122 HOH HOH . D 4 HOH A 123 348 123 HOH HOH . D 4 HOH A 124 349 124 HOH HOH . D 4 HOH A 125 350 125 HOH HOH . D 4 HOH A 126 351 126 HOH HOH . D 4 HOH A 127 352 127 HOH HOH . D 4 HOH A 128 353 128 HOH HOH . D 4 HOH A 129 354 129 HOH HOH . D 4 HOH A 130 355 130 HOH HOH . D 4 HOH A 131 356 131 HOH HOH . D 4 HOH A 132 357 132 HOH HOH . D 4 HOH A 133 358 133 HOH HOH . D 4 HOH A 134 359 134 HOH HOH . D 4 HOH A 135 360 135 HOH HOH . D 4 HOH A 136 361 136 HOH HOH . D 4 HOH A 137 362 138 HOH HOH . D 4 HOH A 138 363 139 HOH HOH . D 4 HOH A 139 364 140 HOH HOH . D 4 HOH A 140 365 141 HOH HOH . D 4 HOH A 141 366 142 HOH HOH . D 4 HOH A 142 367 143 HOH HOH . D 4 HOH A 143 368 144 HOH HOH . D 4 HOH A 144 369 145 HOH HOH . D 4 HOH A 145 370 146 HOH HOH . D 4 HOH A 146 371 147 HOH HOH . D 4 HOH A 147 372 148 HOH HOH . D 4 HOH A 148 373 149 HOH HOH . D 4 HOH A 149 374 150 HOH HOH . D 4 HOH A 150 375 151 HOH HOH . D 4 HOH A 151 376 152 HOH HOH . D 4 HOH A 152 377 153 HOH HOH . D 4 HOH A 153 378 154 HOH HOH . D 4 HOH A 154 379 155 HOH HOH . D 4 HOH A 155 380 156 HOH HOH . D 4 HOH A 156 381 157 HOH HOH . D 4 HOH A 157 382 158 HOH HOH . D 4 HOH A 158 383 159 HOH HOH . D 4 HOH A 159 384 160 HOH HOH . D 4 HOH A 160 385 161 HOH HOH . D 4 HOH A 161 386 162 HOH HOH . D 4 HOH A 162 387 163 HOH HOH . D 4 HOH A 163 388 164 HOH HOH . D 4 HOH A 164 389 165 HOH HOH . D 4 HOH A 165 390 166 HOH HOH . D 4 HOH A 166 391 167 HOH HOH . D 4 HOH A 167 392 168 HOH HOH . D 4 HOH A 168 393 169 HOH HOH . D 4 HOH A 169 394 170 HOH HOH . D 4 HOH A 170 395 171 HOH HOH . D 4 HOH A 171 396 172 HOH HOH . D 4 HOH A 172 397 173 HOH HOH . D 4 HOH A 173 398 174 HOH HOH . D 4 HOH A 174 399 175 HOH HOH . D 4 HOH A 175 400 176 HOH HOH . D 4 HOH A 176 401 177 HOH HOH . D 4 HOH A 177 402 178 HOH HOH . D 4 HOH A 178 403 179 HOH HOH . D 4 HOH A 179 404 180 HOH HOH . D 4 HOH A 180 405 181 HOH HOH . D 4 HOH A 181 406 182 HOH HOH . D 4 HOH A 182 407 183 HOH HOH . D 4 HOH A 183 408 184 HOH HOH . D 4 HOH A 184 409 185 HOH HOH . D 4 HOH A 185 410 186 HOH HOH . D 4 HOH A 186 411 187 HOH HOH . D 4 HOH A 187 412 188 HOH HOH . D 4 HOH A 188 413 189 HOH HOH . D 4 HOH A 189 414 190 HOH HOH . D 4 HOH A 190 415 191 HOH HOH . D 4 HOH A 191 416 192 HOH HOH . D 4 HOH A 192 417 193 HOH HOH . D 4 HOH A 193 418 194 HOH HOH . D 4 HOH A 194 419 195 HOH HOH . D 4 HOH A 195 420 196 HOH HOH . D 4 HOH A 196 421 197 HOH HOH . D 4 HOH A 197 422 198 HOH HOH . D 4 HOH A 198 423 199 HOH HOH . D 4 HOH A 199 424 200 HOH HOH . D 4 HOH A 200 425 201 HOH HOH . D 4 HOH A 201 426 202 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 O09 . . . C 3 -2.247 -11.936 18.355 1 21.61 ? C1 O09 2 A 1 HETATM 2 N N1 O09 . . . C 3 -1.904 -10.652 18.307 1 18.91 ? N1 O09 2 A 1 HETATM 3 O O1 O09 . . . C 3 -0.546 -16.637 12.207 1 27.8 ? O1 O09 2 A 1 HETATM 4 C C2 O09 . . . C 3 -1.927 -12.766 17.143 1 20.51 ? C2 O09 2 A 1 HETATM 5 N N2 O09 . . . C 3 -0.998 -16.084 13.371 1 28.07 ? N2 O09 2 A 1 HETATM 6 O O2 O09 . . . C 3 -3.026 -17.098 9.629 1 30.38 ? O2 O09 2 A 1 HETATM 7 C C3 O09 . . . C 3 -1.003 -12.24 16.241 1 20.84 ? C3 O09 2 A 1 HETATM 8 N N3 O09 . . . C 3 -2.798 -12.415 19.397 1 20.16 ? N3 O09 2 A 1 HETATM 9 O O3 O09 . . . C 3 -2.088 -15.32 10.573 1 32 ? O3 O09 2 A 1 HETATM 10 C C4 O09 . . . C 3 -0.641 -12.93 15.094 1 20.35 ? C4 O09 2 A 1 HETATM 11 C C5 O09 . . . C 3 -1.211 -14.163 14.837 1 21.01 ? C5 O09 2 A 1 HETATM 12 C C6 O09 . . . C 3 -0.781 -14.861 13.606 1 22.94 ? C6 O09 2 A 1 HETATM 13 C C7 O09 . . . C 3 -1.44 -17.434 11.451 1 30.11 ? C7 O09 2 A 1 HETATM 14 C C8 O09 . . . C 3 -2.208 -16.542 10.52 1 30.43 ? C8 O09 2 A 1 HETATM 15 C C9 O09 . . . C 3 -2.142 -14.704 15.728 1 21.9 ? C9 O09 2 A 1 HETATM 16 C C10 O09 . . . C 3 -2.503 -14.007 16.891 1 20.68 ? C10 O09 2 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #