data_3A8D # _model_server_result.job_id 5ddeBL_zZpLwUnvmFz2NOw _model_server_result.datetime_utc '2024-11-07 06:31:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3a8d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":5}' # _entry.id 3A8D # _exptl.entry_id 3A8D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3A8D _cell.length_a 54.06 _cell.length_b 56.888 _cell.length_c 66.22 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3A8D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 25 1_555 A SG CYS 137 A CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 25 A CYS 43 1_555 A SG CYS 41 A CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf3 A SG CYS 109 A CYS 127 1_555 A SG CYS 210 A CYS 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 116 A CYS 134 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf5 A SG CYS 148 A CYS 166 1_555 A SG CYS 162 A CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 B CA CA . A CA 1 1_555 A OE1 GLU 52 A GLU 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc2 B CA CA . A CA 1 1_555 A O ASN 54 A ASN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc3 B CA CA . A CA 1 1_555 A O VAL 57 A VAL 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc4 B CA CA . A CA 1 1_555 A OE2 GLU 62 A GLU 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc5 B CA CA . A CA 1 1_555 I O HOH . A HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc6 B CA CA . A CA 1 1_555 I O HOH . A HOH 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3A8D _atom_sites.fract_transf_matrix[1][1] 0.018498 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017578 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015101 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 1 1 CA CA . C 3 GOL A 1 2 2 GOL GOL . D 3 GOL A 1 3 3 GOL GOL . E 3 GOL A 1 4 4 GOL GOL . F 3 GOL A 1 5 5 GOL GOL . G 3 GOL A 1 6 6 GOL GOL . H 4 O09 A 1 7 7 O09 O09 . I 5 HOH A 1 8 8 HOH HOH . I 5 HOH A 2 9 9 HOH HOH . I 5 HOH A 3 10 10 HOH HOH . I 5 HOH A 4 11 11 HOH HOH . I 5 HOH A 5 12 12 HOH HOH . I 5 HOH A 6 13 13 HOH HOH . I 5 HOH A 7 14 14 HOH HOH . I 5 HOH A 8 15 15 HOH HOH . I 5 HOH A 9 16 16 HOH HOH . I 5 HOH A 10 17 17 HOH HOH . I 5 HOH A 11 18 18 HOH HOH . I 5 HOH A 12 242 242 HOH HOH . I 5 HOH A 13 243 243 HOH HOH . I 5 HOH A 14 244 244 HOH HOH . I 5 HOH A 15 245 245 HOH HOH . I 5 HOH A 16 246 246 HOH HOH . I 5 HOH A 17 247 247 HOH HOH . I 5 HOH A 18 248 248 HOH HOH . I 5 HOH A 19 249 1 HOH HOH . I 5 HOH A 20 250 2 HOH HOH . I 5 HOH A 21 251 3 HOH HOH . I 5 HOH A 22 252 4 HOH HOH . I 5 HOH A 23 253 5 HOH HOH . I 5 HOH A 24 254 6 HOH HOH . I 5 HOH A 25 255 7 HOH HOH . I 5 HOH A 26 256 19 HOH HOH . I 5 HOH A 27 257 20 HOH HOH . I 5 HOH A 28 258 21 HOH HOH . I 5 HOH A 29 259 22 HOH HOH . I 5 HOH A 30 260 23 HOH HOH . I 5 HOH A 31 261 24 HOH HOH . I 5 HOH A 32 262 25 HOH HOH . I 5 HOH A 33 263 26 HOH HOH . I 5 HOH A 34 264 27 HOH HOH . I 5 HOH A 35 265 28 HOH HOH . I 5 HOH A 36 266 29 HOH HOH . I 5 HOH A 37 267 30 HOH HOH . I 5 HOH A 38 268 31 HOH HOH . I 5 HOH A 39 269 32 HOH HOH . I 5 HOH A 40 270 33 HOH HOH . I 5 HOH A 41 271 34 HOH HOH . I 5 HOH A 42 272 35 HOH HOH . I 5 HOH A 43 273 36 HOH HOH . I 5 HOH A 44 274 37 HOH HOH . I 5 HOH A 45 275 38 HOH HOH . I 5 HOH A 46 276 39 HOH HOH . I 5 HOH A 47 277 40 HOH HOH . I 5 HOH A 48 278 41 HOH HOH . I 5 HOH A 49 279 42 HOH HOH . I 5 HOH A 50 280 43 HOH HOH . I 5 HOH A 51 281 44 HOH HOH . I 5 HOH A 52 282 45 HOH HOH . I 5 HOH A 53 283 46 HOH HOH . I 5 HOH A 54 284 47 HOH HOH . I 5 HOH A 55 285 48 HOH HOH . I 5 HOH A 56 286 49 HOH HOH . I 5 HOH A 57 287 50 HOH HOH . I 5 HOH A 58 288 51 HOH HOH . I 5 HOH A 59 289 52 HOH HOH . I 5 HOH A 60 290 53 HOH HOH . I 5 HOH A 61 291 54 HOH HOH . I 5 HOH A 62 292 55 HOH HOH . I 5 HOH A 63 293 56 HOH HOH . I 5 HOH A 64 294 57 HOH HOH . I 5 HOH A 65 295 58 HOH HOH . I 5 HOH A 66 296 59 HOH HOH . I 5 HOH A 67 297 60 HOH HOH . I 5 HOH A 68 298 61 HOH HOH . I 5 HOH A 69 299 62 HOH HOH . I 5 HOH A 70 300 63 HOH HOH . I 5 HOH A 71 301 64 HOH HOH . I 5 HOH A 72 302 65 HOH HOH . I 5 HOH A 73 303 66 HOH HOH . I 5 HOH A 74 304 67 HOH HOH . I 5 HOH A 75 305 68 HOH HOH . I 5 HOH A 76 306 69 HOH HOH . I 5 HOH A 77 307 70 HOH HOH . I 5 HOH A 78 308 71 HOH HOH . I 5 HOH A 79 309 72 HOH HOH . I 5 HOH A 80 310 73 HOH HOH . I 5 HOH A 81 311 74 HOH HOH . I 5 HOH A 82 312 75 HOH HOH . I 5 HOH A 83 313 76 HOH HOH . I 5 HOH A 84 314 77 HOH HOH . I 5 HOH A 85 315 78 HOH HOH . I 5 HOH A 86 316 79 HOH HOH . I 5 HOH A 87 317 80 HOH HOH . I 5 HOH A 88 318 81 HOH HOH . I 5 HOH A 89 319 82 HOH HOH . I 5 HOH A 90 320 83 HOH HOH . I 5 HOH A 91 321 84 HOH HOH . I 5 HOH A 92 322 85 HOH HOH . I 5 HOH A 93 323 86 HOH HOH . I 5 HOH A 94 324 87 HOH HOH . I 5 HOH A 95 325 88 HOH HOH . I 5 HOH A 96 326 89 HOH HOH . I 5 HOH A 97 327 90 HOH HOH . I 5 HOH A 98 328 91 HOH HOH . I 5 HOH A 99 329 92 HOH HOH . I 5 HOH A 100 330 93 HOH HOH . I 5 HOH A 101 331 94 HOH HOH . I 5 HOH A 102 332 95 HOH HOH . I 5 HOH A 103 333 96 HOH HOH . I 5 HOH A 104 334 97 HOH HOH . I 5 HOH A 105 335 98 HOH HOH . I 5 HOH A 106 336 99 HOH HOH . I 5 HOH A 107 337 100 HOH HOH . I 5 HOH A 108 338 101 HOH HOH . I 5 HOH A 109 339 102 HOH HOH . I 5 HOH A 110 340 103 HOH HOH . I 5 HOH A 111 341 104 HOH HOH . I 5 HOH A 112 342 105 HOH HOH . I 5 HOH A 113 343 106 HOH HOH . I 5 HOH A 114 344 107 HOH HOH . I 5 HOH A 115 345 108 HOH HOH . I 5 HOH A 116 346 109 HOH HOH . I 5 HOH A 117 347 110 HOH HOH . I 5 HOH A 118 348 111 HOH HOH . I 5 HOH A 119 349 112 HOH HOH . I 5 HOH A 120 350 113 HOH HOH . I 5 HOH A 121 351 114 HOH HOH . I 5 HOH A 122 352 115 HOH HOH . I 5 HOH A 123 353 116 HOH HOH . I 5 HOH A 124 354 117 HOH HOH . I 5 HOH A 125 355 118 HOH HOH . I 5 HOH A 126 356 119 HOH HOH . I 5 HOH A 127 357 120 HOH HOH . I 5 HOH A 128 358 121 HOH HOH . I 5 HOH A 129 359 122 HOH HOH . I 5 HOH A 130 360 123 HOH HOH . I 5 HOH A 131 361 124 HOH HOH . I 5 HOH A 132 362 125 HOH HOH . I 5 HOH A 133 363 126 HOH HOH . I 5 HOH A 134 364 127 HOH HOH . I 5 HOH A 135 365 128 HOH HOH . I 5 HOH A 136 366 129 HOH HOH . I 5 HOH A 137 367 130 HOH HOH . I 5 HOH A 138 368 131 HOH HOH . I 5 HOH A 139 369 132 HOH HOH . I 5 HOH A 140 370 133 HOH HOH . I 5 HOH A 141 371 134 HOH HOH . I 5 HOH A 142 372 135 HOH HOH . I 5 HOH A 143 373 136 HOH HOH . I 5 HOH A 144 374 137 HOH HOH . I 5 HOH A 145 375 138 HOH HOH . I 5 HOH A 146 376 139 HOH HOH . I 5 HOH A 147 377 140 HOH HOH . I 5 HOH A 148 378 141 HOH HOH . I 5 HOH A 149 379 142 HOH HOH . I 5 HOH A 150 380 143 HOH HOH . I 5 HOH A 151 381 144 HOH HOH . I 5 HOH A 152 382 145 HOH HOH . I 5 HOH A 153 383 146 HOH HOH . I 5 HOH A 154 384 147 HOH HOH . I 5 HOH A 155 385 148 HOH HOH . I 5 HOH A 156 386 149 HOH HOH . I 5 HOH A 157 387 150 HOH HOH . I 5 HOH A 158 388 151 HOH HOH . I 5 HOH A 159 389 152 HOH HOH . I 5 HOH A 160 390 153 HOH HOH . I 5 HOH A 161 391 154 HOH HOH . I 5 HOH A 162 392 155 HOH HOH . I 5 HOH A 163 393 156 HOH HOH . I 5 HOH A 164 394 157 HOH HOH . I 5 HOH A 165 395 158 HOH HOH . I 5 HOH A 166 396 159 HOH HOH . I 5 HOH A 167 397 160 HOH HOH . I 5 HOH A 168 398 161 HOH HOH . I 5 HOH A 169 399 162 HOH HOH . I 5 HOH A 170 400 163 HOH HOH . I 5 HOH A 171 401 165 HOH HOH . I 5 HOH A 172 402 166 HOH HOH . I 5 HOH A 173 403 167 HOH HOH . I 5 HOH A 174 404 168 HOH HOH . I 5 HOH A 175 405 169 HOH HOH . I 5 HOH A 176 406 170 HOH HOH . I 5 HOH A 177 407 171 HOH HOH . I 5 HOH A 178 408 172 HOH HOH . I 5 HOH A 179 409 173 HOH HOH . I 5 HOH A 180 410 174 HOH HOH . I 5 HOH A 181 411 175 HOH HOH . I 5 HOH A 182 412 176 HOH HOH . I 5 HOH A 183 413 177 HOH HOH . I 5 HOH A 184 414 178 HOH HOH . I 5 HOH A 185 415 179 HOH HOH . I 5 HOH A 186 416 180 HOH HOH . I 5 HOH A 187 417 181 HOH HOH . I 5 HOH A 188 418 182 HOH HOH . I 5 HOH A 189 419 183 HOH HOH . I 5 HOH A 190 420 184 HOH HOH . I 5 HOH A 191 421 185 HOH HOH . I 5 HOH A 192 422 186 HOH HOH . I 5 HOH A 193 423 187 HOH HOH . I 5 HOH A 194 424 188 HOH HOH . I 5 HOH A 195 425 189 HOH HOH . I 5 HOH A 196 426 190 HOH HOH . I 5 HOH A 197 427 191 HOH HOH . I 5 HOH A 198 428 192 HOH HOH . I 5 HOH A 199 429 193 HOH HOH . I 5 HOH A 200 430 194 HOH HOH . I 5 HOH A 201 431 195 HOH HOH . I 5 HOH A 202 432 196 HOH HOH . I 5 HOH A 203 433 197 HOH HOH . I 5 HOH A 204 434 198 HOH HOH . I 5 HOH A 205 435 199 HOH HOH . I 5 HOH A 206 436 200 HOH HOH . I 5 HOH A 207 437 201 HOH HOH . I 5 HOH A 208 438 202 HOH HOH . I 5 HOH A 209 439 203 HOH HOH . I 5 HOH A 210 440 204 HOH HOH . I 5 HOH A 211 441 205 HOH HOH . I 5 HOH A 212 442 206 HOH HOH . I 5 HOH A 213 443 207 HOH HOH . I 5 HOH A 214 444 208 HOH HOH . I 5 HOH A 215 445 209 HOH HOH . I 5 HOH A 216 446 210 HOH HOH . I 5 HOH A 217 447 211 HOH HOH . I 5 HOH A 218 448 212 HOH HOH . I 5 HOH A 219 449 213 HOH HOH . I 5 HOH A 220 450 214 HOH HOH . I 5 HOH A 221 451 215 HOH HOH . I 5 HOH A 222 452 216 HOH HOH . I 5 HOH A 223 453 217 HOH HOH . I 5 HOH A 224 454 218 HOH HOH . I 5 HOH A 225 455 219 HOH HOH . I 5 HOH A 226 456 220 HOH HOH . I 5 HOH A 227 457 221 HOH HOH . I 5 HOH A 228 458 222 HOH HOH . I 5 HOH A 229 459 223 HOH HOH . I 5 HOH A 230 460 224 HOH HOH . I 5 HOH A 231 461 225 HOH HOH . I 5 HOH A 232 462 226 HOH HOH . I 5 HOH A 233 463 227 HOH HOH . I 5 HOH A 234 464 228 HOH HOH . I 5 HOH A 235 465 229 HOH HOH . I 5 HOH A 236 466 230 HOH HOH . I 5 HOH A 237 467 231 HOH HOH . I 5 HOH A 238 468 232 HOH HOH . I 5 HOH A 239 469 233 HOH HOH . I 5 HOH A 240 470 234 HOH HOH . I 5 HOH A 241 471 235 HOH HOH . I 5 HOH A 242 472 236 HOH HOH . I 5 HOH A 243 473 237 HOH HOH . I 5 HOH A 244 474 238 HOH HOH . I 5 HOH A 245 475 239 HOH HOH . I 5 HOH A 246 476 240 HOH HOH . I 5 HOH A 247 477 241 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 9.693 -1.245 19.895 1 24.09 ? C1 GOL 5 A 1 HETATM 2 O O1 GOL . . . F 3 10.19 -0.267 18.995 1 18.71 ? O1 GOL 5 A 1 HETATM 3 C C2 GOL . . . F 3 9.762 -0.716 21.33 1 24.06 ? C2 GOL 5 A 1 HETATM 4 O O2 GOL . . . F 3 11.056 -0.274 21.591 1 22.33 ? O2 GOL 5 A 1 HETATM 5 C C3 GOL . . . F 3 9.448 -1.749 22.397 1 25.52 ? C3 GOL 5 A 1 HETATM 6 O O3 GOL . . . F 3 9.61 -1.128 23.658 1 28.56 ? O3 GOL 5 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 6 #