data_3A8R # _model_server_result.job_id zWwC3RJcPEZ4LxeK9fAbLQ _model_server_result.datetime_utc '2024-10-19 10:15:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3a8r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 3A8R # _exptl.entry_id 3A8R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3A8R _cell.length_a 60.418 _cell.length_b 72.162 _cell.length_c 118.902 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3A8R _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E O HOH . A HOH 25 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc2 A OD1 ASP 108 A ASP 242 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc3 A OD1 ASN 110 A ASN 244 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc4 A OD1 ASP 112 A ASP 246 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc5 A O ARG 114 A ARG 248 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc6 A OE1 GLU 119 A GLU 253 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc7 A OE2 GLU 119 A GLU 253 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc8 F O HOH . B HOH 68 1_555 D CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc9 B OD1 ASP 108 B ASP 242 1_555 D CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc10 B OD1 ASN 110 B ASN 244 1_555 D CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc11 B OD1 ASP 112 B ASP 246 1_555 D CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc12 B O ARG 114 B ARG 248 1_555 D CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc13 B OE1 GLU 119 B GLU 253 1_555 D CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc14 B OE2 GLU 119 B GLU 253 1_555 D CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3A8R _atom_sites.fract_transf_matrix[1][1] 0.016551 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013858 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00841 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 401 401 CA CA . D 2 CA B 1 402 402 CA CA . E 3 HOH A 1 4 4 HOH HOH . E 3 HOH A 2 5 5 HOH HOH . E 3 HOH A 3 7 7 HOH HOH . E 3 HOH A 4 11 11 HOH HOH . E 3 HOH A 5 12 12 HOH HOH . E 3 HOH A 6 13 13 HOH HOH . E 3 HOH A 7 14 14 HOH HOH . E 3 HOH A 8 15 15 HOH HOH . E 3 HOH A 9 17 17 HOH HOH . E 3 HOH A 10 18 18 HOH HOH . E 3 HOH A 11 20 20 HOH HOH . E 3 HOH A 12 22 22 HOH HOH . E 3 HOH A 13 25 25 HOH HOH . E 3 HOH A 14 30 30 HOH HOH . E 3 HOH A 15 31 31 HOH HOH . E 3 HOH A 16 33 33 HOH HOH . E 3 HOH A 17 35 35 HOH HOH . E 3 HOH A 18 37 37 HOH HOH . E 3 HOH A 19 38 38 HOH HOH . E 3 HOH A 20 39 39 HOH HOH . E 3 HOH A 21 42 42 HOH HOH . E 3 HOH A 22 43 43 HOH HOH . E 3 HOH A 23 48 48 HOH HOH . E 3 HOH A 24 50 50 HOH HOH . E 3 HOH A 25 51 51 HOH HOH . E 3 HOH A 26 52 52 HOH HOH . E 3 HOH A 27 55 55 HOH HOH . E 3 HOH A 28 56 56 HOH HOH . E 3 HOH A 29 57 57 HOH HOH . E 3 HOH A 30 59 59 HOH HOH . E 3 HOH A 31 64 64 HOH HOH . E 3 HOH A 32 65 65 HOH HOH . E 3 HOH A 33 67 67 HOH HOH . E 3 HOH A 34 70 70 HOH HOH . E 3 HOH A 35 71 71 HOH HOH . E 3 HOH A 36 72 72 HOH HOH . E 3 HOH A 37 73 73 HOH HOH . E 3 HOH A 38 74 74 HOH HOH . F 3 HOH B 1 1 1 HOH HOH . F 3 HOH B 2 2 2 HOH HOH . F 3 HOH B 3 3 3 HOH HOH . F 3 HOH B 4 6 6 HOH HOH . F 3 HOH B 5 8 8 HOH HOH . F 3 HOH B 6 9 9 HOH HOH . F 3 HOH B 7 10 10 HOH HOH . F 3 HOH B 8 16 16 HOH HOH . F 3 HOH B 9 19 19 HOH HOH . F 3 HOH B 10 21 21 HOH HOH . F 3 HOH B 11 23 23 HOH HOH . F 3 HOH B 12 24 24 HOH HOH . F 3 HOH B 13 26 26 HOH HOH . F 3 HOH B 14 27 27 HOH HOH . F 3 HOH B 15 28 28 HOH HOH . F 3 HOH B 16 29 29 HOH HOH . F 3 HOH B 17 32 32 HOH HOH . F 3 HOH B 18 34 34 HOH HOH . F 3 HOH B 19 36 36 HOH HOH . F 3 HOH B 20 40 40 HOH HOH . F 3 HOH B 21 41 41 HOH HOH . F 3 HOH B 22 44 44 HOH HOH . F 3 HOH B 23 45 45 HOH HOH . F 3 HOH B 24 46 46 HOH HOH . F 3 HOH B 25 47 47 HOH HOH . F 3 HOH B 26 49 49 HOH HOH . F 3 HOH B 27 53 53 HOH HOH . F 3 HOH B 28 54 54 HOH HOH . F 3 HOH B 29 58 58 HOH HOH . F 3 HOH B 30 60 60 HOH HOH . F 3 HOH B 31 61 61 HOH HOH . F 3 HOH B 32 62 62 HOH HOH . F 3 HOH B 33 63 63 HOH HOH . F 3 HOH B 34 66 66 HOH HOH . F 3 HOH B 35 68 68 HOH HOH . F 3 HOH B 36 69 69 HOH HOH . F 3 HOH B 37 75 75 HOH HOH . F 3 HOH B 38 76 76 HOH HOH . F 3 HOH B 39 77 77 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -27.098 _atom_site.Cartn_y -6.08 _atom_site.Cartn_z 28.198 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.32 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #