data_3A8W # _model_server_result.job_id Q0cUEhAoWvWUgxO0U5NU1g _model_server_result.datetime_utc '2024-11-14 22:38:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3a8w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 3A8W # _exptl.entry_id 3A8W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3A8W _cell.length_a 85.039 _cell.length_b 89.136 _cell.length_c 206.395 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3A8W _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F 1 1 B,D,E,G 2 1 A,B,C,D,E,F,G 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 168 A SER 402 1_555 A N TPO 169 A TPO 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C TPO 169 A TPO 403 1_555 A N PHE 170 A PHE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C LEU 320 A LEU 554 1_555 A N TPO 321 A TPO 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C TPO 321 A TPO 555 1_555 A N PRO 322 A PRO 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale5 B C SER 168 B SER 402 1_555 B N TPO 169 B TPO 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 B C TPO 169 B TPO 403 1_555 B N PHE 170 B PHE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale7 B C LEU 320 B LEU 554 1_555 B N TPO 321 B TPO 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 B C TPO 321 B TPO 555 1_555 B N PRO 322 B PRO 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3A8W _atom_sites.fract_transf_matrix[1][1] 0.011759 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011219 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004845 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 601 601 ATP ATP . D 2 ATP B 1 601 601 ATP ATP . E 3 SO4 B 1 611 611 SO4 SO4 . F 4 HOH A 1 701 701 HOH HOH . F 4 HOH A 2 704 704 HOH HOH . F 4 HOH A 3 706 706 HOH HOH . F 4 HOH A 4 712 712 HOH HOH . F 4 HOH A 5 713 713 HOH HOH . F 4 HOH A 6 714 714 HOH HOH . F 4 HOH A 7 716 716 HOH HOH . F 4 HOH A 8 717 717 HOH HOH . F 4 HOH A 9 719 719 HOH HOH . F 4 HOH A 10 720 720 HOH HOH . F 4 HOH A 11 723 723 HOH HOH . F 4 HOH A 12 725 725 HOH HOH . F 4 HOH A 13 726 726 HOH HOH . F 4 HOH A 14 727 727 HOH HOH . F 4 HOH A 15 729 729 HOH HOH . F 4 HOH A 16 732 732 HOH HOH . F 4 HOH A 17 735 735 HOH HOH . F 4 HOH A 18 736 736 HOH HOH . F 4 HOH A 19 738 738 HOH HOH . F 4 HOH A 20 740 740 HOH HOH . F 4 HOH A 21 742 742 HOH HOH . F 4 HOH A 22 743 743 HOH HOH . F 4 HOH A 23 745 745 HOH HOH . F 4 HOH A 24 748 748 HOH HOH . F 4 HOH A 25 750 750 HOH HOH . F 4 HOH A 26 751 751 HOH HOH . F 4 HOH A 27 753 753 HOH HOH . F 4 HOH A 28 759 759 HOH HOH . F 4 HOH A 29 761 761 HOH HOH . F 4 HOH A 30 764 764 HOH HOH . F 4 HOH A 31 766 766 HOH HOH . F 4 HOH A 32 767 767 HOH HOH . F 4 HOH A 33 770 770 HOH HOH . F 4 HOH A 34 774 774 HOH HOH . F 4 HOH A 35 775 775 HOH HOH . F 4 HOH A 36 778 778 HOH HOH . F 4 HOH A 37 780 780 HOH HOH . F 4 HOH A 38 783 783 HOH HOH . F 4 HOH A 39 784 784 HOH HOH . F 4 HOH A 40 785 785 HOH HOH . F 4 HOH A 41 788 788 HOH HOH . F 4 HOH A 42 789 789 HOH HOH . F 4 HOH A 43 790 790 HOH HOH . F 4 HOH A 44 791 791 HOH HOH . F 4 HOH A 45 793 793 HOH HOH . F 4 HOH A 46 794 794 HOH HOH . F 4 HOH A 47 795 795 HOH HOH . F 4 HOH A 48 797 797 HOH HOH . F 4 HOH A 49 799 799 HOH HOH . F 4 HOH A 50 800 800 HOH HOH . F 4 HOH A 51 801 801 HOH HOH . F 4 HOH A 52 803 803 HOH HOH . F 4 HOH A 53 804 804 HOH HOH . F 4 HOH A 54 808 808 HOH HOH . F 4 HOH A 55 810 810 HOH HOH . F 4 HOH A 56 814 814 HOH HOH . F 4 HOH A 57 818 818 HOH HOH . F 4 HOH A 58 819 819 HOH HOH . F 4 HOH A 59 820 820 HOH HOH . F 4 HOH A 60 822 822 HOH HOH . F 4 HOH A 61 823 823 HOH HOH . F 4 HOH A 62 824 824 HOH HOH . F 4 HOH A 63 825 825 HOH HOH . F 4 HOH A 64 826 826 HOH HOH . F 4 HOH A 65 827 827 HOH HOH . F 4 HOH A 66 829 829 HOH HOH . F 4 HOH A 67 832 832 HOH HOH . F 4 HOH A 68 833 833 HOH HOH . F 4 HOH A 69 834 834 HOH HOH . F 4 HOH A 70 840 840 HOH HOH . F 4 HOH A 71 841 841 HOH HOH . F 4 HOH A 72 845 845 HOH HOH . F 4 HOH A 73 847 847 HOH HOH . F 4 HOH A 74 848 848 HOH HOH . F 4 HOH A 75 849 849 HOH HOH . F 4 HOH A 76 850 850 HOH HOH . F 4 HOH A 77 851 851 HOH HOH . F 4 HOH A 78 852 852 HOH HOH . F 4 HOH A 79 854 854 HOH HOH . F 4 HOH A 80 855 855 HOH HOH . F 4 HOH A 81 862 862 HOH HOH . F 4 HOH A 82 864 864 HOH HOH . F 4 HOH A 83 865 865 HOH HOH . F 4 HOH A 84 866 866 HOH HOH . F 4 HOH A 85 870 870 HOH HOH . F 4 HOH A 86 871 871 HOH HOH . F 4 HOH A 87 875 875 HOH HOH . G 4 HOH B 1 702 702 HOH HOH . G 4 HOH B 2 703 703 HOH HOH . G 4 HOH B 3 705 705 HOH HOH . G 4 HOH B 4 707 707 HOH HOH . G 4 HOH B 5 708 708 HOH HOH . G 4 HOH B 6 709 709 HOH HOH . G 4 HOH B 7 710 710 HOH HOH . G 4 HOH B 8 715 715 HOH HOH . G 4 HOH B 9 718 718 HOH HOH . G 4 HOH B 10 722 722 HOH HOH . G 4 HOH B 11 724 724 HOH HOH . G 4 HOH B 12 728 728 HOH HOH . G 4 HOH B 13 730 730 HOH HOH . G 4 HOH B 14 733 733 HOH HOH . G 4 HOH B 15 734 734 HOH HOH . G 4 HOH B 16 741 741 HOH HOH . G 4 HOH B 17 744 744 HOH HOH . G 4 HOH B 18 746 746 HOH HOH . G 4 HOH B 19 747 747 HOH HOH . G 4 HOH B 20 749 749 HOH HOH . G 4 HOH B 21 752 752 HOH HOH . G 4 HOH B 22 754 754 HOH HOH . G 4 HOH B 23 755 755 HOH HOH . G 4 HOH B 24 756 756 HOH HOH . G 4 HOH B 25 758 758 HOH HOH . G 4 HOH B 26 760 760 HOH HOH . G 4 HOH B 27 763 763 HOH HOH . G 4 HOH B 28 765 765 HOH HOH . G 4 HOH B 29 768 768 HOH HOH . G 4 HOH B 30 769 769 HOH HOH . G 4 HOH B 31 771 771 HOH HOH . G 4 HOH B 32 772 772 HOH HOH . G 4 HOH B 33 776 776 HOH HOH . G 4 HOH B 34 777 777 HOH HOH . G 4 HOH B 35 779 779 HOH HOH . G 4 HOH B 36 781 781 HOH HOH . G 4 HOH B 37 782 782 HOH HOH . G 4 HOH B 38 786 786 HOH HOH . G 4 HOH B 39 787 787 HOH HOH . G 4 HOH B 40 792 792 HOH HOH . G 4 HOH B 41 796 796 HOH HOH . G 4 HOH B 42 798 798 HOH HOH . G 4 HOH B 43 802 802 HOH HOH . G 4 HOH B 44 807 807 HOH HOH . G 4 HOH B 45 809 809 HOH HOH . G 4 HOH B 46 811 811 HOH HOH . G 4 HOH B 47 812 812 HOH HOH . G 4 HOH B 48 813 813 HOH HOH . G 4 HOH B 49 815 815 HOH HOH . G 4 HOH B 50 816 816 HOH HOH . G 4 HOH B 51 817 817 HOH HOH . G 4 HOH B 52 821 821 HOH HOH . G 4 HOH B 53 830 830 HOH HOH . G 4 HOH B 54 831 831 HOH HOH . G 4 HOH B 55 835 835 HOH HOH . G 4 HOH B 56 836 836 HOH HOH . G 4 HOH B 57 837 837 HOH HOH . G 4 HOH B 58 838 838 HOH HOH . G 4 HOH B 59 839 839 HOH HOH . G 4 HOH B 60 842 842 HOH HOH . G 4 HOH B 61 843 843 HOH HOH . G 4 HOH B 62 844 844 HOH HOH . G 4 HOH B 63 846 846 HOH HOH . G 4 HOH B 64 853 853 HOH HOH . G 4 HOH B 65 856 856 HOH HOH . G 4 HOH B 66 857 857 HOH HOH . G 4 HOH B 67 858 858 HOH HOH . G 4 HOH B 68 859 859 HOH HOH . G 4 HOH B 69 860 860 HOH HOH . G 4 HOH B 70 861 861 HOH HOH . G 4 HOH B 71 863 863 HOH HOH . G 4 HOH B 72 869 869 HOH HOH . G 4 HOH B 73 872 872 HOH HOH . G 4 HOH B 74 873 873 HOH HOH . G 4 HOH B 75 874 874 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 2 8.301 -24.762 -6.709 1 19.18 ? PG ATP 601 A 1 HETATM 2 O O1G ATP . . . C 2 9.03 -26.032 -6.366 1 21.13 ? O1G ATP 601 A 1 HETATM 3 O O2G ATP . . . C 2 7.192 -24.45 -5.734 1 20.7 ? O2G ATP 601 A 1 HETATM 4 O O3G ATP . . . C 2 9.196 -23.566 -7.005 1 18.8 ? O3G ATP 601 A 1 HETATM 5 P PB ATP . . . C 2 7.964 -25.131 -9.615 1 17.72 ? PB ATP 601 A 1 HETATM 6 O O1B ATP . . . C 2 7.073 -26.215 -10.131 1 14.62 ? O1B ATP 601 A 1 HETATM 7 O O2B ATP . . . C 2 9.473 -25.323 -9.729 1 20.51 ? O2B ATP 601 A 1 HETATM 8 O O3B ATP . . . C 2 7.478 -25.025 -8.082 1 17.21 ? O3B ATP 601 A 1 HETATM 9 P PA ATP . . . C 2 6.2 -22.942 -10.236 1 21.42 ? PA ATP 601 A 1 HETATM 10 O O1A ATP . . . C 2 4.962 -23.793 -10.277 1 21.08 ? O1A ATP 601 A 1 HETATM 11 O O2A ATP . . . C 2 6.276 -21.91 -9.14 1 26.39 ? O2A ATP 601 A 1 HETATM 12 O O3A ATP . . . C 2 7.564 -23.788 -10.389 1 20.64 ? O3A ATP 601 A 1 HETATM 13 O O5' ATP . . . C 2 6.293 -22.105 -11.595 1 22.67 ? O5' ATP 601 A 1 HETATM 14 C C5' ATP . . . C 2 7.252 -21.068 -11.676 1 23.89 ? C5' ATP 601 A 1 HETATM 15 C C4' ATP . . . C 2 6.603 -19.876 -12.349 1 21.71 ? C4' ATP 601 A 1 HETATM 16 O O4' ATP . . . C 2 6.247 -20.234 -13.685 1 21.79 ? O4' ATP 601 A 1 HETATM 17 C C3' ATP . . . C 2 5.313 -19.404 -11.712 1 24.37 ? C3' ATP 601 A 1 HETATM 18 O O3' ATP . . . C 2 5.508 -18.502 -10.622 1 27.43 ? O3' ATP 601 A 1 HETATM 19 C C2' ATP . . . C 2 4.657 -18.691 -12.869 1 23.1 ? C2' ATP 601 A 1 HETATM 20 O O2' ATP . . . C 2 5.174 -17.353 -12.981 1 22.6 ? O2' ATP 601 A 1 HETATM 21 C C1' ATP . . . C 2 5.097 -19.515 -14.075 1 15.83 ? C1' ATP 601 A 1 HETATM 22 N N9 ATP . . . C 2 4.019 -20.494 -14.281 1 19.7 ? N9 ATP 601 A 1 HETATM 23 C C8 ATP . . . C 2 3.838 -21.661 -13.641 1 17.63 ? C8 ATP 601 A 1 HETATM 24 N N7 ATP . . . C 2 2.7 -22.274 -14.076 1 22.02 ? N7 ATP 601 A 1 HETATM 25 C C5 ATP . . . C 2 2.138 -21.486 -15.001 1 17.68 ? C5 ATP 601 A 1 HETATM 26 C C6 ATP . . . C 2 0.946 -21.523 -15.859 1 16.09 ? C6 ATP 601 A 1 HETATM 27 N N6 ATP . . . C 2 0.065 -22.54 -15.798 1 15.25 ? N6 ATP 601 A 1 HETATM 28 N N1 ATP . . . C 2 0.742 -20.486 -16.691 1 19.69 ? N1 ATP 601 A 1 HETATM 29 C C2 ATP . . . C 2 1.579 -19.435 -16.754 1 23.5 ? C2 ATP 601 A 1 HETATM 30 N N3 ATP . . . C 2 2.695 -19.346 -16.009 1 20.98 ? N3 ATP 601 A 1 HETATM 31 C C4 ATP . . . C 2 3.017 -20.319 -15.137 1 21.37 ? C4 ATP 601 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #