data_3A9E # _model_server_result.job_id Syq1nnfyQZAckSnmFxk1Fg _model_server_result.datetime_utc '2024-11-23 09:15:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3a9e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 3A9E # _exptl.entry_id 3A9E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 396.562 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2E,4E,6Z)-3-methyl-7-(5,5,8,8-tetramethyl-3-propoxy-5,6,7,8-tetrahydronaphthalen-2-yl)octa-2,4,6-trienoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3A9E _cell.length_a 105.3 _cell.length_b 105.3 _cell.length_c 111.338 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3A9E _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H36 O3' _chem_comp.formula_weight 396.562 _chem_comp.id 754 _chem_comp.mon_nstd_flag . _chem_comp.name '(2E,4E,6Z)-3-methyl-7-(5,5,8,8-tetramethyl-3-propoxy-5,6,7,8-tetrahydronaphthalen-2-yl)octa-2,4,6-trienoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 754 doub 1 n y C1 C3 754 sing 2 n y C1 C4 754 sing 3 n n O1 C7 754 sing 4 n n O1 C25 754 sing 5 n n C2 C5 754 sing 6 n y C2 C6 754 sing 7 n n O2 C24 754 doub 8 n n C3 C8 754 doub 9 n y O3 C24 754 sing 10 n n C4 C9 754 sing 11 n n C4 C13 754 sing 12 n n C4 C14 754 sing 13 n n C5 C7 754 doub 14 n y C6 C10 754 sing 15 n n C6 C15 754 sing 16 n n C6 C16 754 sing 17 n n C7 C8 754 sing 18 n y C8 C11 754 sing 19 n n C9 C10 754 sing 20 n n C11 C17 754 doub 21 n n C11 C18 754 sing 22 n n C12 C25 754 sing 23 n n C12 C26 754 sing 24 n n C17 C19 754 sing 25 n n C19 C20 754 doub 26 n n C20 C21 754 sing 27 n n C21 C22 754 doub 28 z n C21 C23 754 sing 29 n n C22 C24 754 sing 30 n n C3 H3 754 sing 31 n n O3 HO3 754 sing 32 n n C5 H5 754 sing 33 n n C9 H9 754 sing 34 n n C9 H9A 754 sing 35 n n C10 H10 754 sing 36 n n C10 H10A 754 sing 37 n n C12 H12 754 sing 38 n n C12 H12A 754 sing 39 n n C13 H13 754 sing 40 n n C13 H13A 754 sing 41 n n C13 H13B 754 sing 42 n n C14 H14 754 sing 43 n n C14 H14A 754 sing 44 n n C14 H14B 754 sing 45 n n C15 H15 754 sing 46 n n C15 H15A 754 sing 47 n n C15 H15B 754 sing 48 n n C16 H16 754 sing 49 n n C16 H16A 754 sing 50 n n C16 H16B 754 sing 51 e n C17 H17 754 sing 52 n n C18 H18 754 sing 53 n n C18 H18A 754 sing 54 n n C18 H18B 754 sing 55 e n C19 H19 754 sing 56 n n C20 H20 754 sing 57 n n C22 H22 754 sing 58 n n C23 H23 754 sing 59 n n C23 H23A 754 sing 60 n n C23 H23B 754 sing 61 n n C25 H25 754 sing 62 n n C25 H25A 754 sing 63 n n C26 H26 754 sing 64 n n C26 H26A 754 sing 65 n n C26 H26B 754 sing 66 n n # _atom_sites.entry_id 3A9E _atom_sites.fract_transf_matrix[1][1] 0.009497 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009497 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008982 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 754 A 1 1 1 754 754 . E 5 REA B 1 1 1 REA REA . F 6 HOH A 1 3 3 HOH HOH . F 6 HOH A 2 8 8 HOH HOH . F 6 HOH A 3 9 9 HOH HOH . F 6 HOH A 4 17 17 HOH HOH . F 6 HOH A 5 27 27 HOH HOH . F 6 HOH A 6 34 34 HOH HOH . F 6 HOH A 7 48 48 HOH HOH . F 6 HOH A 8 53 53 HOH HOH . F 6 HOH A 9 57 57 HOH HOH . F 6 HOH A 10 63 63 HOH HOH . F 6 HOH A 11 70 70 HOH HOH . F 6 HOH A 12 71 71 HOH HOH . F 6 HOH A 13 73 73 HOH HOH . F 6 HOH A 14 75 75 HOH HOH . F 6 HOH A 15 77 77 HOH HOH . F 6 HOH A 16 79 79 HOH HOH . F 6 HOH A 17 80 80 HOH HOH . F 6 HOH A 18 82 82 HOH HOH . F 6 HOH A 19 86 86 HOH HOH . F 6 HOH A 20 87 87 HOH HOH . F 6 HOH A 21 101 101 HOH HOH . F 6 HOH A 22 104 104 HOH HOH . F 6 HOH A 23 132 132 HOH HOH . F 6 HOH A 24 133 133 HOH HOH . F 6 HOH A 25 134 134 HOH HOH . F 6 HOH A 26 135 135 HOH HOH . F 6 HOH A 27 137 137 HOH HOH . F 6 HOH A 28 140 140 HOH HOH . F 6 HOH A 29 141 141 HOH HOH . F 6 HOH A 30 142 142 HOH HOH . F 6 HOH A 31 143 143 HOH HOH . F 6 HOH A 32 144 144 HOH HOH . F 6 HOH A 33 145 145 HOH HOH . F 6 HOH A 34 146 146 HOH HOH . F 6 HOH A 35 147 147 HOH HOH . F 6 HOH A 36 148 148 HOH HOH . F 6 HOH A 37 150 150 HOH HOH . F 6 HOH A 38 152 152 HOH HOH . F 6 HOH A 39 154 154 HOH HOH . F 6 HOH A 40 156 156 HOH HOH . F 6 HOH A 41 159 159 HOH HOH . F 6 HOH A 42 186 186 HOH HOH . F 6 HOH A 43 191 191 HOH HOH . F 6 HOH A 44 192 192 HOH HOH . F 6 HOH A 45 193 193 HOH HOH . F 6 HOH A 46 194 194 HOH HOH . F 6 HOH A 47 195 195 HOH HOH . F 6 HOH A 48 197 197 HOH HOH . F 6 HOH A 49 198 198 HOH HOH . F 6 HOH A 50 202 202 HOH HOH . F 6 HOH A 51 205 205 HOH HOH . F 6 HOH A 52 219 219 HOH HOH . F 6 HOH A 53 220 220 HOH HOH . F 6 HOH A 54 221 221 HOH HOH . G 6 HOH B 1 4 4 HOH HOH . G 6 HOH B 2 5 5 HOH HOH . G 6 HOH B 3 12 12 HOH HOH . G 6 HOH B 4 13 13 HOH HOH . G 6 HOH B 5 14 14 HOH HOH . G 6 HOH B 6 16 16 HOH HOH . G 6 HOH B 7 18 18 HOH HOH . G 6 HOH B 8 21 21 HOH HOH . G 6 HOH B 9 24 24 HOH HOH . G 6 HOH B 10 29 29 HOH HOH . G 6 HOH B 11 32 32 HOH HOH . G 6 HOH B 12 37 37 HOH HOH . G 6 HOH B 13 38 38 HOH HOH . G 6 HOH B 14 40 40 HOH HOH . G 6 HOH B 15 41 41 HOH HOH . G 6 HOH B 16 45 45 HOH HOH . G 6 HOH B 17 54 54 HOH HOH . G 6 HOH B 18 66 66 HOH HOH . G 6 HOH B 19 68 68 HOH HOH . G 6 HOH B 20 72 72 HOH HOH . G 6 HOH B 21 74 74 HOH HOH . G 6 HOH B 22 76 76 HOH HOH . G 6 HOH B 23 81 81 HOH HOH . G 6 HOH B 24 93 93 HOH HOH . G 6 HOH B 25 107 107 HOH HOH . G 6 HOH B 26 116 116 HOH HOH . G 6 HOH B 27 123 123 HOH HOH . G 6 HOH B 28 125 125 HOH HOH . G 6 HOH B 29 151 151 HOH HOH . G 6 HOH B 30 422 155 HOH HOH . G 6 HOH B 31 423 157 HOH HOH . G 6 HOH B 32 424 160 HOH HOH . G 6 HOH B 33 425 161 HOH HOH . G 6 HOH B 34 426 165 HOH HOH . G 6 HOH B 35 427 166 HOH HOH . G 6 HOH B 36 428 167 HOH HOH . G 6 HOH B 37 429 168 HOH HOH . G 6 HOH B 38 430 169 HOH HOH . G 6 HOH B 39 431 172 HOH HOH . G 6 HOH B 40 432 173 HOH HOH . G 6 HOH B 41 433 174 HOH HOH . G 6 HOH B 42 434 175 HOH HOH . G 6 HOH B 43 435 176 HOH HOH . G 6 HOH B 44 436 177 HOH HOH . G 6 HOH B 45 437 178 HOH HOH . G 6 HOH B 46 438 179 HOH HOH . G 6 HOH B 47 439 185 HOH HOH . G 6 HOH B 48 440 201 HOH HOH . G 6 HOH B 49 441 204 HOH HOH . G 6 HOH B 50 442 206 HOH HOH . G 6 HOH B 51 443 208 HOH HOH . G 6 HOH B 52 444 209 HOH HOH . G 6 HOH B 53 445 210 HOH HOH . G 6 HOH B 54 446 211 HOH HOH . G 6 HOH B 55 447 212 HOH HOH . G 6 HOH B 56 448 214 HOH HOH . G 6 HOH B 57 449 216 HOH HOH . G 6 HOH B 58 450 218 HOH HOH . G 6 HOH B 59 451 222 HOH HOH . G 6 HOH B 60 452 223 HOH HOH . H 6 HOH I 1 184 184 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 754 . . . D 4 47.591 61.292 -5.656 1 38.3 ? C1 754 1 A 1 HETATM 2 O O1 754 . . . D 4 50.825 63.615 -4.478 1 57.92 ? O1 754 1 A 1 HETATM 3 C C2 754 . . . D 4 48.851 60.715 -5.562 1 44.69 ? C2 754 1 A 1 HETATM 4 O O2 754 . . . D 4 47.327 67.641 -11.872 1 58.8 ? O2 754 1 A 1 HETATM 5 C C3 754 . . . D 4 47.426 62.643 -5.354 1 37.7 ? C3 754 1 A 1 HETATM 6 O O3 754 . . . D 4 46.229 69.418 -11.254 1 51.83 ? O3 754 1 A 1 HETATM 7 C C4 754 . . . D 4 46.376 60.513 -6.073 1 39.89 ? C4 754 1 A 1 HETATM 8 C C5 754 . . . D 4 49.932 61.497 -5.166 1 49.57 ? C5 754 1 A 1 HETATM 9 C C6 754 . . . D 4 49.125 59.267 -5.863 1 47.49 ? C6 754 1 A 1 HETATM 10 C C7 754 . . . D 4 49.762 62.841 -4.862 1 50.63 ? C7 754 1 A 1 HETATM 11 C C8 754 . . . D 4 48.515 63.42 -4.975 1 40.7 ? C8 754 1 A 1 HETATM 12 C C9 754 . . . D 4 46.595 59.011 -5.958 1 42.26 ? C9 754 1 A 1 HETATM 13 C C10 754 . . . D 4 47.939 58.564 -6.51 1 44.46 ? C10 754 1 A 1 HETATM 14 C C11 754 . . . D 4 48.364 64.87 -4.618 1 43.1 ? C11 754 1 A 1 HETATM 15 C C12 754 . . . D 4 53.158 64.036 -4.141 1 71.16 ? C12 754 1 A 1 HETATM 16 C C13 754 . . . D 4 46.029 60.875 -7.512 1 28.7 ? C13 754 1 A 1 HETATM 17 C C14 754 . . . D 4 45.225 60.917 -5.16 1 45.61 ? C14 754 1 A 1 HETATM 18 C C15 754 . . . D 4 49.461 58.575 -4.547 1 43.49 ? C15 754 1 A 1 HETATM 19 C C16 754 . . . D 4 50.329 59.192 -6.794 1 48.41 ? C16 754 1 A 1 HETATM 20 C C17 754 . . . D 4 48.126 65.848 -5.504 1 44.75 ? C17 754 1 A 1 HETATM 21 C C18 754 . . . D 4 48.477 65.254 -3.173 1 46.4 ? C18 754 1 A 1 HETATM 22 C C19 754 . . . D 4 47.984 65.696 -6.948 1 37.6 ? C19 754 1 A 1 HETATM 23 C C20 754 . . . D 4 47.799 66.838 -7.607 1 35.7 ? C20 754 1 A 1 HETATM 24 C C21 754 . . . D 4 47.627 66.94 -9.068 1 37.24 ? C21 754 1 A 1 HETATM 25 C C22 754 . . . D 4 47.133 68.094 -9.55 1 45.57 ? C22 754 1 A 1 HETATM 26 C C23 754 . . . D 4 48.005 65.789 -9.953 1 36.81 ? C23 754 1 A 1 HETATM 27 C C24 754 . . . D 4 46.887 68.392 -10.977 1 53.08 ? C24 754 1 A 1 HETATM 28 C C25 754 . . . D 4 52.028 63.024 -3.997 1 66.31 ? C25 754 1 A 1 HETATM 29 C C26 754 . . . D 4 52.632 65.449 -4.006 1 68.14 ? C26 754 1 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #