data_3A9E # _model_server_result.job_id NxnL9HlyymMuQUsi4lEhqg _model_server_result.datetime_utc '2024-11-27 01:09:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3a9e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1}' # _entry.id 3A9E # _exptl.entry_id 3A9E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.435 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'RETINOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3A9E _cell.length_a 105.3 _cell.length_b 105.3 _cell.length_c 111.338 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3A9E _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H28 O2' _chem_comp.formula_weight 300.435 _chem_comp.id REA _chem_comp.mon_nstd_flag . _chem_comp.name 'RETINOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 REA sing 343 n n C1 C6 REA sing 344 n n C1 C16 REA sing 345 n n C1 C17 REA sing 346 n n C2 C3 REA sing 347 n n C2 H21 REA sing 348 n n C2 H22 REA sing 349 n n C3 C4 REA sing 350 n n C3 H31 REA sing 351 n n C3 H32 REA sing 352 n n C4 C5 REA sing 353 n n C4 H41 REA sing 354 n n C4 H42 REA sing 355 n n C5 C6 REA doub 356 n n C5 C18 REA sing 357 n n C6 C7 REA sing 358 n n C7 C8 REA doub 359 e n C7 H7 REA sing 360 n n C8 C9 REA sing 361 n n C8 H8 REA sing 362 n n C9 C10 REA doub 363 e n C9 C19 REA sing 364 n n C10 C11 REA sing 365 n n C10 H10 REA sing 366 n n C11 C12 REA doub 367 e n C11 H11 REA sing 368 n n C12 C13 REA sing 369 n n C12 H12 REA sing 370 n n C13 C14 REA doub 371 e n C13 C20 REA sing 372 n n C14 C15 REA sing 373 n n C14 H14 REA sing 374 n n C15 O1 REA doub 375 n n C15 O2 REA sing 376 n n C16 H161 REA sing 377 n n C16 H162 REA sing 378 n n C16 H163 REA sing 379 n n C17 H171 REA sing 380 n n C17 H172 REA sing 381 n n C17 H173 REA sing 382 n n C18 H181 REA sing 383 n n C18 H182 REA sing 384 n n C18 H183 REA sing 385 n n C19 H191 REA sing 386 n n C19 H192 REA sing 387 n n C19 H193 REA sing 388 n n C20 H201 REA sing 389 n n C20 H202 REA sing 390 n n C20 H203 REA sing 391 n n O2 HO2 REA sing 392 n n # _atom_sites.entry_id 3A9E _atom_sites.fract_transf_matrix[1][1] 0.009497 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009497 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008982 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 754 A 1 1 1 754 754 . E 5 REA B 1 1 1 REA REA . F 6 HOH A 1 3 3 HOH HOH . F 6 HOH A 2 8 8 HOH HOH . F 6 HOH A 3 9 9 HOH HOH . F 6 HOH A 4 17 17 HOH HOH . F 6 HOH A 5 27 27 HOH HOH . F 6 HOH A 6 34 34 HOH HOH . F 6 HOH A 7 48 48 HOH HOH . F 6 HOH A 8 53 53 HOH HOH . F 6 HOH A 9 57 57 HOH HOH . F 6 HOH A 10 63 63 HOH HOH . F 6 HOH A 11 70 70 HOH HOH . F 6 HOH A 12 71 71 HOH HOH . F 6 HOH A 13 73 73 HOH HOH . F 6 HOH A 14 75 75 HOH HOH . F 6 HOH A 15 77 77 HOH HOH . F 6 HOH A 16 79 79 HOH HOH . F 6 HOH A 17 80 80 HOH HOH . F 6 HOH A 18 82 82 HOH HOH . F 6 HOH A 19 86 86 HOH HOH . F 6 HOH A 20 87 87 HOH HOH . F 6 HOH A 21 101 101 HOH HOH . F 6 HOH A 22 104 104 HOH HOH . F 6 HOH A 23 132 132 HOH HOH . F 6 HOH A 24 133 133 HOH HOH . F 6 HOH A 25 134 134 HOH HOH . F 6 HOH A 26 135 135 HOH HOH . F 6 HOH A 27 137 137 HOH HOH . F 6 HOH A 28 140 140 HOH HOH . F 6 HOH A 29 141 141 HOH HOH . F 6 HOH A 30 142 142 HOH HOH . F 6 HOH A 31 143 143 HOH HOH . F 6 HOH A 32 144 144 HOH HOH . F 6 HOH A 33 145 145 HOH HOH . F 6 HOH A 34 146 146 HOH HOH . F 6 HOH A 35 147 147 HOH HOH . F 6 HOH A 36 148 148 HOH HOH . F 6 HOH A 37 150 150 HOH HOH . F 6 HOH A 38 152 152 HOH HOH . F 6 HOH A 39 154 154 HOH HOH . F 6 HOH A 40 156 156 HOH HOH . F 6 HOH A 41 159 159 HOH HOH . F 6 HOH A 42 186 186 HOH HOH . F 6 HOH A 43 191 191 HOH HOH . F 6 HOH A 44 192 192 HOH HOH . F 6 HOH A 45 193 193 HOH HOH . F 6 HOH A 46 194 194 HOH HOH . F 6 HOH A 47 195 195 HOH HOH . F 6 HOH A 48 197 197 HOH HOH . F 6 HOH A 49 198 198 HOH HOH . F 6 HOH A 50 202 202 HOH HOH . F 6 HOH A 51 205 205 HOH HOH . F 6 HOH A 52 219 219 HOH HOH . F 6 HOH A 53 220 220 HOH HOH . F 6 HOH A 54 221 221 HOH HOH . G 6 HOH B 1 4 4 HOH HOH . G 6 HOH B 2 5 5 HOH HOH . G 6 HOH B 3 12 12 HOH HOH . G 6 HOH B 4 13 13 HOH HOH . G 6 HOH B 5 14 14 HOH HOH . G 6 HOH B 6 16 16 HOH HOH . G 6 HOH B 7 18 18 HOH HOH . G 6 HOH B 8 21 21 HOH HOH . G 6 HOH B 9 24 24 HOH HOH . G 6 HOH B 10 29 29 HOH HOH . G 6 HOH B 11 32 32 HOH HOH . G 6 HOH B 12 37 37 HOH HOH . G 6 HOH B 13 38 38 HOH HOH . G 6 HOH B 14 40 40 HOH HOH . G 6 HOH B 15 41 41 HOH HOH . G 6 HOH B 16 45 45 HOH HOH . G 6 HOH B 17 54 54 HOH HOH . G 6 HOH B 18 66 66 HOH HOH . G 6 HOH B 19 68 68 HOH HOH . G 6 HOH B 20 72 72 HOH HOH . G 6 HOH B 21 74 74 HOH HOH . G 6 HOH B 22 76 76 HOH HOH . G 6 HOH B 23 81 81 HOH HOH . G 6 HOH B 24 93 93 HOH HOH . G 6 HOH B 25 107 107 HOH HOH . G 6 HOH B 26 116 116 HOH HOH . G 6 HOH B 27 123 123 HOH HOH . G 6 HOH B 28 125 125 HOH HOH . G 6 HOH B 29 151 151 HOH HOH . G 6 HOH B 30 422 155 HOH HOH . G 6 HOH B 31 423 157 HOH HOH . G 6 HOH B 32 424 160 HOH HOH . G 6 HOH B 33 425 161 HOH HOH . G 6 HOH B 34 426 165 HOH HOH . G 6 HOH B 35 427 166 HOH HOH . G 6 HOH B 36 428 167 HOH HOH . G 6 HOH B 37 429 168 HOH HOH . G 6 HOH B 38 430 169 HOH HOH . G 6 HOH B 39 431 172 HOH HOH . G 6 HOH B 40 432 173 HOH HOH . G 6 HOH B 41 433 174 HOH HOH . G 6 HOH B 42 434 175 HOH HOH . G 6 HOH B 43 435 176 HOH HOH . G 6 HOH B 44 436 177 HOH HOH . G 6 HOH B 45 437 178 HOH HOH . G 6 HOH B 46 438 179 HOH HOH . G 6 HOH B 47 439 185 HOH HOH . G 6 HOH B 48 440 201 HOH HOH . G 6 HOH B 49 441 204 HOH HOH . G 6 HOH B 50 442 206 HOH HOH . G 6 HOH B 51 443 208 HOH HOH . G 6 HOH B 52 444 209 HOH HOH . G 6 HOH B 53 445 210 HOH HOH . G 6 HOH B 54 446 211 HOH HOH . G 6 HOH B 55 447 212 HOH HOH . G 6 HOH B 56 448 214 HOH HOH . G 6 HOH B 57 449 216 HOH HOH . G 6 HOH B 58 450 218 HOH HOH . G 6 HOH B 59 451 222 HOH HOH . G 6 HOH B 60 452 223 HOH HOH . H 6 HOH I 1 184 184 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 REA . . . E 5 36.992 49.005 18.962 1 77.34 ? C1 REA 1 B 1 HETATM 2 C C2 REA . . . E 5 37.583 47.732 18.377 1 81.36 ? C2 REA 1 B 1 HETATM 3 C C3 REA . . . E 5 37.042 46.519 19.119 1 80.12 ? C3 REA 1 B 1 HETATM 4 C C4 REA . . . E 5 35.547 46.351 18.886 1 76.09 ? C4 REA 1 B 1 HETATM 5 C C5 REA . . . E 5 34.824 47.677 18.797 1 74.55 ? C5 REA 1 B 1 HETATM 6 C C6 REA . . . E 5 35.476 48.903 18.95 1 76.16 ? C6 REA 1 B 1 HETATM 7 C C7 REA . . . E 5 34.687 50.137 19.103 1 72.74 ? C7 REA 1 B 1 HETATM 8 C C8 REA . . . E 5 33.793 50.28 20.259 1 61.07 ? C8 REA 1 B 1 HETATM 9 C C9 REA . . . E 5 32.641 51.189 20.231 1 43.39 ? C9 REA 1 B 1 HETATM 10 C C10 REA . . . E 5 31.342 50.673 20.677 1 47 ? C10 REA 1 B 1 HETATM 11 C C11 REA . . . E 5 30.499 51.416 21.621 1 50.23 ? C11 REA 1 B 1 HETATM 12 C C12 REA . . . E 5 29.741 50.624 22.596 1 56.28 ? C12 REA 1 B 1 HETATM 13 C C13 REA . . . E 5 28.516 51.13 23.224 1 64.34 ? C13 REA 1 B 1 HETATM 14 C C14 REA . . . E 5 27.781 50.245 24.043 1 72.47 ? C14 REA 1 B 1 HETATM 15 C C15 REA . . . E 5 26.701 50.678 24.942 1 74.61 ? C15 REA 1 B 1 HETATM 16 C C16 REA . . . E 5 37.402 50.212 18.126 1 70.35 ? C16 REA 1 B 1 HETATM 17 C C17 REA . . . E 5 37.456 49.181 20.403 1 80.2 ? C17 REA 1 B 1 HETATM 18 C C18 REA . . . E 5 33.347 47.656 18.525 1 72.06 ? C18 REA 1 B 1 HETATM 19 C C19 REA . . . E 5 32.786 52.605 19.76 1 34.48 ? C19 REA 1 B 1 HETATM 20 C C20 REA . . . E 5 28.075 52.545 22.986 1 63.37 ? C20 REA 1 B 1 HETATM 21 O O1 REA . . . E 5 26.463 50.02 25.977 1 76.73 ? O1 REA 1 B 1 HETATM 22 O O2 REA . . . E 5 26 51.682 24.692 1 76.66 ? O2 REA 1 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #