data_3A9G # _model_server_result.job_id kSoHPpcL0ajpyiy6qmRZZA _model_server_result.datetime_utc '2024-12-26 17:38:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3a9g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 3A9G # _exptl.entry_id 3A9G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3A9G _cell.length_a 177.74 _cell.length_b 177.74 _cell.length_c 89.937 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3A9G _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O1 _pdbx_entity_branch_link.leaving_atom_id_2 HO1 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 B 1 GLC A 2001 TRE 2 n B GLC 2 B 2 GLC A 2001 TRE 2 n C GLC 1 C 1 GLC A 2002 TRE 2 n C GLC 2 C 2 GLC A 2002 TRE # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C1 GLC . B GLC 1 1_555 B O1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.418 sing covale ? covale2 C C1 GLC . C GLC 1 1_555 C O1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 sing metalc ? metalc1 A OE2 GLU 223 A GLU 240 1_555 D CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc2 A OE1 GLU 223 A GLU 240 1_555 D CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc3 A O TYR 233 A TYR 250 1_555 D CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc4 D CA CA . A CA 1001 1_555 E O HOH . A HOH 4012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc5 D CA CA . A CA 1001 1_555 E O HOH . A HOH 4025 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc6 D CA CA . A CA 1001 1_555 E O HOH . A HOH 4070 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc7 D CA CA . A CA 1001 1_555 E O HOH . A HOH 4071 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3A9G _atom_sites.fract_transf_matrix[1][1] 0.005626 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005626 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011119 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 CA A 1 1001 1001 CA CA . E 4 HOH A 1 4001 4001 HOH HOH . E 4 HOH A 2 4002 4002 HOH HOH . E 4 HOH A 3 4003 4003 HOH HOH . E 4 HOH A 4 4004 4004 HOH HOH . E 4 HOH A 5 4005 4005 HOH HOH . E 4 HOH A 6 4006 4006 HOH HOH . E 4 HOH A 7 4007 4007 HOH HOH . E 4 HOH A 8 4008 4008 HOH HOH . E 4 HOH A 9 4009 4009 HOH HOH . E 4 HOH A 10 4010 4010 HOH HOH . E 4 HOH A 11 4011 4011 HOH HOH . E 4 HOH A 12 4012 4012 HOH HOH . E 4 HOH A 13 4013 4013 HOH HOH . E 4 HOH A 14 4014 4014 HOH HOH . E 4 HOH A 15 4015 4015 HOH HOH . E 4 HOH A 16 4016 4016 HOH HOH . E 4 HOH A 17 4017 4017 HOH HOH . E 4 HOH A 18 4018 4018 HOH HOH . E 4 HOH A 19 4019 4019 HOH HOH . E 4 HOH A 20 4020 4020 HOH HOH . E 4 HOH A 21 4021 4021 HOH HOH . E 4 HOH A 22 4022 4022 HOH HOH . E 4 HOH A 23 4023 4023 HOH HOH . E 4 HOH A 24 4024 4024 HOH HOH . E 4 HOH A 25 4025 4025 HOH HOH . E 4 HOH A 26 4026 4026 HOH HOH . E 4 HOH A 27 4027 4027 HOH HOH . E 4 HOH A 28 4028 4028 HOH HOH . E 4 HOH A 29 4029 4029 HOH HOH . E 4 HOH A 30 4030 4030 HOH HOH . E 4 HOH A 31 4031 4031 HOH HOH . E 4 HOH A 32 4032 4032 HOH HOH . E 4 HOH A 33 4033 4033 HOH HOH . E 4 HOH A 34 4034 4034 HOH HOH . E 4 HOH A 35 4035 4035 HOH HOH . E 4 HOH A 36 4036 4036 HOH HOH . E 4 HOH A 37 4037 4037 HOH HOH . E 4 HOH A 38 4038 4038 HOH HOH . E 4 HOH A 39 4039 4039 HOH HOH . E 4 HOH A 40 4040 4040 HOH HOH . E 4 HOH A 41 4041 4041 HOH HOH . E 4 HOH A 42 4042 4042 HOH HOH . E 4 HOH A 43 4043 4043 HOH HOH . E 4 HOH A 44 4044 4044 HOH HOH . E 4 HOH A 45 4045 4045 HOH HOH . E 4 HOH A 46 4046 4046 HOH HOH . E 4 HOH A 47 4047 4047 HOH HOH . E 4 HOH A 48 4048 4048 HOH HOH . E 4 HOH A 49 4049 4049 HOH HOH . E 4 HOH A 50 4050 4050 HOH HOH . E 4 HOH A 51 4051 4051 HOH HOH . E 4 HOH A 52 4052 4052 HOH HOH . E 4 HOH A 53 4053 4053 HOH HOH . E 4 HOH A 54 4054 4054 HOH HOH . E 4 HOH A 55 4055 4055 HOH HOH . E 4 HOH A 56 4056 4056 HOH HOH . E 4 HOH A 57 4057 4057 HOH HOH . E 4 HOH A 58 4058 4058 HOH HOH . E 4 HOH A 59 4059 4059 HOH HOH . E 4 HOH A 60 4060 4060 HOH HOH . E 4 HOH A 61 4061 4061 HOH HOH . E 4 HOH A 62 4062 4062 HOH HOH . E 4 HOH A 63 4063 4063 HOH HOH . E 4 HOH A 64 4064 4064 HOH HOH . E 4 HOH A 65 4065 4065 HOH HOH . E 4 HOH A 66 4066 4066 HOH HOH . E 4 HOH A 67 4067 4067 HOH HOH . E 4 HOH A 68 4068 4068 HOH HOH . E 4 HOH A 69 4069 4069 HOH HOH . E 4 HOH A 70 4070 4070 HOH HOH . E 4 HOH A 71 4071 4071 HOH HOH . E 4 HOH A 72 4072 4072 HOH HOH . E 4 HOH A 73 4073 4073 HOH HOH . E 4 HOH A 74 4074 4074 HOH HOH . E 4 HOH A 75 4075 4075 HOH HOH . E 4 HOH A 76 4076 4076 HOH HOH . E 4 HOH A 77 4077 4077 HOH HOH . E 4 HOH A 78 4078 4078 HOH HOH . E 4 HOH A 79 4079 4079 HOH HOH . E 4 HOH A 80 4080 4080 HOH HOH . E 4 HOH A 81 4081 4081 HOH HOH . E 4 HOH A 82 4082 4082 HOH HOH . E 4 HOH A 83 4083 4083 HOH HOH . E 4 HOH A 84 4084 4084 HOH HOH . E 4 HOH A 85 4085 4085 HOH HOH . E 4 HOH A 86 4086 4086 HOH HOH . E 4 HOH A 87 4087 4087 HOH HOH . E 4 HOH A 88 4088 4088 HOH HOH . E 4 HOH A 89 4089 4089 HOH HOH . E 4 HOH A 90 4090 4090 HOH HOH . E 4 HOH A 91 4091 4091 HOH HOH . E 4 HOH A 92 4092 4092 HOH HOH . E 4 HOH A 93 4093 4093 HOH HOH . E 4 HOH A 94 4094 4094 HOH HOH . E 4 HOH A 95 4095 4095 HOH HOH . E 4 HOH A 96 4096 4096 HOH HOH . E 4 HOH A 97 4097 4097 HOH HOH . E 4 HOH A 98 4098 4098 HOH HOH . E 4 HOH A 99 4099 4099 HOH HOH . E 4 HOH A 100 4100 4100 HOH HOH . E 4 HOH A 101 4101 4101 HOH HOH . E 4 HOH A 102 4102 4102 HOH HOH . E 4 HOH A 103 4103 4103 HOH HOH . E 4 HOH A 104 4104 4104 HOH HOH . E 4 HOH A 105 4105 4105 HOH HOH . E 4 HOH A 106 4106 4106 HOH HOH . E 4 HOH A 107 4107 4107 HOH HOH . E 4 HOH A 108 4108 4108 HOH HOH . E 4 HOH A 109 4109 4109 HOH HOH . E 4 HOH A 110 4110 4110 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -14.971 _atom_site.Cartn_y 16.115 _atom_site.Cartn_z -8.938 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.92 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1001 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 361 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #