data_3A9H # _model_server_result.job_id NJVyrfufcujAGAXOvk1CyA _model_server_result.datetime_utc '2025-02-05 10:40:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3a9h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":3001}' # _entry.id 3A9H # _exptl.entry_id 3A9H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 330.206 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYRROLOQUINOLINE QUINONE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3A9H _cell.length_a 177.344 _cell.length_b 177.344 _cell.length_c 89.743 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3A9H _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O1 _pdbx_entity_branch_link.leaving_atom_id_2 HO1 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 B 1 GLC A 2001 TRE 2 n B GLC 2 B 2 GLC A 2001 TRE 2 n C GLC 1 C 1 GLC A 2002 TRE 2 n C GLC 2 C 2 GLC A 2002 TRE # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C1 GLC . B GLC 1 1_555 B O1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 sing covale ? covale2 C C1 GLC . C GLC 1 1_555 C O1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 sing metalc ? metalc1 A OE2 GLU 223 A GLU 240 1_555 D CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc2 A OE1 GLU 223 A GLU 240 1_555 D CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc3 A O TYR 233 A TYR 250 1_555 D CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc4 D CA CA . A CA 1001 1_555 F O HOH . A HOH 4012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc5 D CA CA . A CA 1001 1_555 F O HOH . A HOH 4023 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc6 D CA CA . A CA 1001 1_555 F O HOH . A HOH 4059 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc7 D CA CA . A CA 1001 1_555 F O HOH . A HOH 4060 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? # _chem_comp.formula 'C14 H6 N2 O8' _chem_comp.formula_weight 330.206 _chem_comp.id PQQ _chem_comp.mon_nstd_flag . _chem_comp.name 'PYRROLOQUINOLINE QUINONE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PQQ sing 284 n y N1 C1A PQQ sing 285 n y N1 HN1 PQQ sing 286 n n C2 C2X PQQ sing 287 n n C2 C3 PQQ doub 288 n y C2X O2A PQQ doub 289 n n C2X O2B PQQ sing 290 n n O2B HOB2 PQQ sing 291 n n C3 C3A PQQ sing 292 n y C3 H3 PQQ sing 293 n n C3A C1A PQQ doub 294 n y C3A C4 PQQ sing 295 n n C1A C9A PQQ sing 296 n y C4 O4 PQQ doub 297 n n C4 C5 PQQ sing 298 n n C5 O5 PQQ doub 299 n n C5 C6A PQQ sing 300 n n C6A N6 PQQ doub 301 n y C6A C9A PQQ sing 302 n y N6 C7 PQQ sing 303 n y C7 C7X PQQ sing 304 n n C7 C8 PQQ doub 305 n y C7X O7A PQQ doub 306 n n C7X O7B PQQ sing 307 n n O7B HOB7 PQQ sing 308 n n C8 C9 PQQ sing 309 n y C8 H8 PQQ sing 310 n n C9 C9X PQQ sing 311 n n C9 C9A PQQ doub 312 n y C9X O9A PQQ doub 313 n n C9X O9B PQQ sing 314 n n O9B HOB9 PQQ sing 315 n n # _atom_sites.entry_id 3A9H _atom_sites.fract_transf_matrix[1][1] 0.005639 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005639 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011143 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 CA A 1 1001 1001 CA CA . E 4 PQQ A 1 3001 3001 PQQ PQQ . F 5 HOH A 1 4001 4001 HOH HOH . F 5 HOH A 2 4002 4002 HOH HOH . F 5 HOH A 3 4003 4003 HOH HOH . F 5 HOH A 4 4004 4004 HOH HOH . F 5 HOH A 5 4005 4005 HOH HOH . F 5 HOH A 6 4006 4006 HOH HOH . F 5 HOH A 7 4007 4007 HOH HOH . F 5 HOH A 8 4008 4008 HOH HOH . F 5 HOH A 9 4009 4009 HOH HOH . F 5 HOH A 10 4010 4010 HOH HOH . F 5 HOH A 11 4011 4011 HOH HOH . F 5 HOH A 12 4012 4012 HOH HOH . F 5 HOH A 13 4013 4013 HOH HOH . F 5 HOH A 14 4014 4014 HOH HOH . F 5 HOH A 15 4015 4015 HOH HOH . F 5 HOH A 16 4016 4016 HOH HOH . F 5 HOH A 17 4017 4017 HOH HOH . F 5 HOH A 18 4018 4018 HOH HOH . F 5 HOH A 19 4019 4019 HOH HOH . F 5 HOH A 20 4020 4020 HOH HOH . F 5 HOH A 21 4021 4021 HOH HOH . F 5 HOH A 22 4022 4022 HOH HOH . F 5 HOH A 23 4023 4023 HOH HOH . F 5 HOH A 24 4024 4024 HOH HOH . F 5 HOH A 25 4025 4025 HOH HOH . F 5 HOH A 26 4026 4026 HOH HOH . F 5 HOH A 27 4027 4027 HOH HOH . F 5 HOH A 28 4028 4028 HOH HOH . F 5 HOH A 29 4029 4029 HOH HOH . F 5 HOH A 30 4030 4030 HOH HOH . F 5 HOH A 31 4031 4031 HOH HOH . F 5 HOH A 32 4032 4032 HOH HOH . F 5 HOH A 33 4033 4033 HOH HOH . F 5 HOH A 34 4034 4034 HOH HOH . F 5 HOH A 35 4035 4035 HOH HOH . F 5 HOH A 36 4036 4036 HOH HOH . F 5 HOH A 37 4037 4037 HOH HOH . F 5 HOH A 38 4038 4038 HOH HOH . F 5 HOH A 39 4039 4039 HOH HOH . F 5 HOH A 40 4040 4040 HOH HOH . F 5 HOH A 41 4041 4041 HOH HOH . F 5 HOH A 42 4042 4042 HOH HOH . F 5 HOH A 43 4043 4043 HOH HOH . F 5 HOH A 44 4044 4044 HOH HOH . F 5 HOH A 45 4045 4045 HOH HOH . F 5 HOH A 46 4046 4046 HOH HOH . F 5 HOH A 47 4047 4047 HOH HOH . F 5 HOH A 48 4048 4048 HOH HOH . F 5 HOH A 49 4049 4049 HOH HOH . F 5 HOH A 50 4050 4050 HOH HOH . F 5 HOH A 51 4051 4051 HOH HOH . F 5 HOH A 52 4052 4052 HOH HOH . F 5 HOH A 53 4053 4053 HOH HOH . F 5 HOH A 54 4054 4054 HOH HOH . F 5 HOH A 55 4055 4055 HOH HOH . F 5 HOH A 56 4056 4056 HOH HOH . F 5 HOH A 57 4057 4057 HOH HOH . F 5 HOH A 58 4058 4058 HOH HOH . F 5 HOH A 59 4059 4059 HOH HOH . F 5 HOH A 60 4060 4060 HOH HOH . F 5 HOH A 61 4061 4061 HOH HOH . F 5 HOH A 62 4062 4062 HOH HOH . F 5 HOH A 63 4063 4063 HOH HOH . F 5 HOH A 64 4064 4064 HOH HOH . F 5 HOH A 65 4065 4065 HOH HOH . F 5 HOH A 66 4066 4066 HOH HOH . F 5 HOH A 67 4067 4067 HOH HOH . F 5 HOH A 68 4068 4068 HOH HOH . F 5 HOH A 69 4069 4069 HOH HOH . F 5 HOH A 70 4070 4070 HOH HOH . F 5 HOH A 71 4071 4071 HOH HOH . F 5 HOH A 72 4072 4072 HOH HOH . F 5 HOH A 73 4073 4073 HOH HOH . F 5 HOH A 74 4074 4074 HOH HOH . F 5 HOH A 75 4075 4075 HOH HOH . F 5 HOH A 76 4076 4076 HOH HOH . F 5 HOH A 77 4077 4077 HOH HOH . F 5 HOH A 78 4078 4078 HOH HOH . F 5 HOH A 79 4079 4079 HOH HOH . F 5 HOH A 80 4080 4080 HOH HOH . F 5 HOH A 81 4081 4081 HOH HOH . F 5 HOH A 82 4082 4082 HOH HOH . F 5 HOH A 83 4083 4083 HOH HOH . F 5 HOH A 84 4084 4084 HOH HOH . F 5 HOH A 85 4085 4085 HOH HOH . F 5 HOH A 86 4086 4086 HOH HOH . F 5 HOH A 87 4087 4087 HOH HOH . F 5 HOH A 88 4088 4088 HOH HOH . F 5 HOH A 89 4089 4089 HOH HOH . F 5 HOH A 90 4090 4090 HOH HOH . F 5 HOH A 91 4091 4091 HOH HOH . F 5 HOH A 92 4092 4092 HOH HOH . F 5 HOH A 93 4093 4093 HOH HOH . F 5 HOH A 94 4094 4094 HOH HOH . F 5 HOH A 95 4095 4095 HOH HOH . F 5 HOH A 96 4096 4096 HOH HOH . F 5 HOH A 97 4097 4097 HOH HOH . F 5 HOH A 98 4098 4098 HOH HOH . F 5 HOH A 99 4099 4099 HOH HOH . F 5 HOH A 100 4100 4100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PQQ . . . E 4 -24.142 2.297 -5.625 1 35.63 ? N1 PQQ 3001 A 1 HETATM 2 C C2 PQQ . . . E 4 -23.286 1.734 -6.531 1 35.22 ? C2 PQQ 3001 A 1 HETATM 3 C C2X PQQ . . . E 4 -23.64 0.571 -7.415 1 35.32 ? C2X PQQ 3001 A 1 HETATM 4 O O2A PQQ . . . E 4 -24.722 -0.002 -7.18 1 35.43 ? O2A PQQ 3001 A 1 HETATM 5 O O2B PQQ . . . E 4 -22.853 0.097 -8.272 1 32.28 ? O2B PQQ 3001 A 1 HETATM 6 C C3 PQQ . . . E 4 -22.041 2.351 -6.467 1 35.37 ? C3 PQQ 3001 A 1 HETATM 7 C C3A PQQ . . . E 4 -22.181 3.351 -5.437 1 35.73 ? C3A PQQ 3001 A 1 HETATM 8 C C1A PQQ . . . E 4 -23.55 3.273 -4.918 1 35.13 ? C1A PQQ 3001 A 1 HETATM 9 C C4 PQQ . . . E 4 -21.253 4.386 -4.863 1 35.14 ? C4 PQQ 3001 A 1 HETATM 10 O O4 PQQ . . . E 4 -20.08 4.506 -5.258 1 35.17 ? O4 PQQ 3001 A 1 HETATM 11 C C5 PQQ . . . E 4 -21.734 5.28 -3.784 1 35.57 ? C5 PQQ 3001 A 1 HETATM 12 O O5 PQQ . . . E 4 -20.979 6.142 -3.257 1 35.5 ? O5 PQQ 3001 A 1 HETATM 13 C C6A PQQ . . . E 4 -23.14 5.123 -3.326 1 35.49 ? C6A PQQ 3001 A 1 HETATM 14 N N6 PQQ . . . E 4 -23.585 5.941 -2.361 1 35.56 ? N6 PQQ 3001 A 1 HETATM 15 C C7 PQQ . . . E 4 -24.847 5.875 -1.885 1 35.77 ? C7 PQQ 3001 A 1 HETATM 16 C C7X PQQ . . . E 4 -25.214 6.814 -0.784 1 36.11 ? C7X PQQ 3001 A 1 HETATM 17 O O7A PQQ . . . E 4 -24.428 7.726 -0.469 1 37.85 ? O7A PQQ 3001 A 1 HETATM 18 O O7B PQQ . . . E 4 -26.279 6.608 -0.162 1 43.21 ? O7B PQQ 3001 A 1 HETATM 19 C C8 PQQ . . . E 4 -25.782 4.962 -2.362 1 35.27 ? C8 PQQ 3001 A 1 HETATM 20 C C9 PQQ . . . E 4 -25.443 4.066 -3.368 1 35.15 ? C9 PQQ 3001 A 1 HETATM 21 C C9X PQQ . . . E 4 -26.503 3.131 -3.822 1 35.01 ? C9X PQQ 3001 A 1 HETATM 22 O O9A PQQ . . . E 4 -27.662 3.556 -3.926 1 35.67 ? O9A PQQ 3001 A 1 HETATM 23 O O9B PQQ . . . E 4 -26.241 1.968 -4.104 1 35.8 ? O9B PQQ 3001 A 1 HETATM 24 C C9A PQQ . . . E 4 -24.053 4.097 -3.915 1 35.09 ? C9A PQQ 3001 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #