data_3A9L # _model_server_result.job_id -WCVnSn69yCb6gkQ4ER65Q _model_server_result.datetime_utc '2024-12-26 21:06:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3a9l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":261}' # _entry.id 3A9L # _exptl.entry_id 3A9L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3A9L _cell.length_a 86.809 _cell.length_b 86.809 _cell.length_c 85.116 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3A9L _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 40 A HIS 40 1_555 C ZN ZN . A ZN 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc2 A OE1 GLU 45 A GLU 45 1_555 C ZN ZN . A ZN 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc3 A OE2 GLU 45 A GLU 45 1_555 C ZN ZN . A ZN 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc4 A ND1 HIS 103 A HIS 103 1_555 C ZN ZN . A ZN 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc5 C ZN ZN . A ZN 251 1_555 D O4 PO4 . A PO4 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc6 C ZN ZN . A ZN 251 1_555 G O HOH . A HOH 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc7 B ND1 HIS 40 B HIS 40 1_555 E ZN ZN . B ZN 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc8 B OE1 GLU 45 B GLU 45 1_555 E ZN ZN . B ZN 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc9 B OE2 GLU 45 B GLU 45 1_555 E ZN ZN . B ZN 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc10 B ND1 HIS 103 B HIS 103 1_555 E ZN ZN . B ZN 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc11 E ZN ZN . B ZN 251 1_555 H O HOH . B HOH 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc12 E ZN ZN . B ZN 251 1_555 F O4 PO4 . B PO4 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 3A9L _atom_sites.fract_transf_matrix[1][1] 0.01152 _atom_sites.fract_transf_matrix[1][2] 0.006651 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013302 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011749 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 251 251 ZN ZN . D 3 PO4 A 1 261 261 PO4 PO4 . E 2 ZN B 1 251 251 ZN ZN . F 3 PO4 B 1 261 261 PO4 PO4 . G 4 HOH A 1 217 1 HOH HOH . G 4 HOH A 2 218 2 HOH HOH . G 4 HOH A 3 219 3 HOH HOH . G 4 HOH A 4 220 4 HOH HOH . G 4 HOH A 5 221 5 HOH HOH . G 4 HOH A 6 222 6 HOH HOH . G 4 HOH A 7 223 7 HOH HOH . G 4 HOH A 8 224 8 HOH HOH . G 4 HOH A 9 225 9 HOH HOH . G 4 HOH A 10 226 10 HOH HOH . G 4 HOH A 11 227 11 HOH HOH . G 4 HOH A 12 228 12 HOH HOH . G 4 HOH A 13 229 13 HOH HOH . G 4 HOH A 14 230 14 HOH HOH . G 4 HOH A 15 231 15 HOH HOH . G 4 HOH A 16 232 16 HOH HOH . G 4 HOH A 17 233 17 HOH HOH . G 4 HOH A 18 234 18 HOH HOH . G 4 HOH A 19 235 19 HOH HOH . G 4 HOH A 20 236 20 HOH HOH . G 4 HOH A 21 237 21 HOH HOH . G 4 HOH A 22 238 22 HOH HOH . G 4 HOH A 23 239 23 HOH HOH . G 4 HOH A 24 240 24 HOH HOH . G 4 HOH A 25 242 26 HOH HOH . G 4 HOH A 26 243 27 HOH HOH . G 4 HOH A 27 244 28 HOH HOH . G 4 HOH A 28 245 29 HOH HOH . G 4 HOH A 29 246 30 HOH HOH . G 4 HOH A 30 247 31 HOH HOH . G 4 HOH A 31 248 32 HOH HOH . G 4 HOH A 32 249 33 HOH HOH . G 4 HOH A 33 250 34 HOH HOH . G 4 HOH A 34 252 35 HOH HOH . G 4 HOH A 35 253 36 HOH HOH . G 4 HOH A 36 254 37 HOH HOH . G 4 HOH A 37 255 38 HOH HOH . G 4 HOH A 38 256 39 HOH HOH . G 4 HOH A 39 257 40 HOH HOH . G 4 HOH A 40 258 41 HOH HOH . G 4 HOH A 41 259 42 HOH HOH . G 4 HOH A 42 260 43 HOH HOH . G 4 HOH A 43 262 44 HOH HOH . G 4 HOH A 44 263 45 HOH HOH . G 4 HOH A 45 264 46 HOH HOH . G 4 HOH A 46 265 47 HOH HOH . G 4 HOH A 47 266 48 HOH HOH . G 4 HOH A 48 267 49 HOH HOH . G 4 HOH A 49 268 50 HOH HOH . G 4 HOH A 50 269 51 HOH HOH . G 4 HOH A 51 270 52 HOH HOH . G 4 HOH A 52 271 53 HOH HOH . G 4 HOH A 53 272 54 HOH HOH . G 4 HOH A 54 273 55 HOH HOH . G 4 HOH A 55 274 56 HOH HOH . G 4 HOH A 56 275 57 HOH HOH . G 4 HOH A 57 276 58 HOH HOH . G 4 HOH A 58 277 59 HOH HOH . G 4 HOH A 59 278 60 HOH HOH . G 4 HOH A 60 279 61 HOH HOH . G 4 HOH A 61 280 62 HOH HOH . G 4 HOH A 62 281 63 HOH HOH . G 4 HOH A 63 282 64 HOH HOH . G 4 HOH A 64 283 65 HOH HOH . G 4 HOH A 65 284 66 HOH HOH . G 4 HOH A 66 285 67 HOH HOH . G 4 HOH A 67 286 68 HOH HOH . G 4 HOH A 68 287 69 HOH HOH . G 4 HOH A 69 288 70 HOH HOH . G 4 HOH A 70 289 71 HOH HOH . G 4 HOH A 71 290 72 HOH HOH . G 4 HOH A 72 291 73 HOH HOH . G 4 HOH A 73 292 74 HOH HOH . G 4 HOH A 74 293 75 HOH HOH . G 4 HOH A 75 294 76 HOH HOH . G 4 HOH A 76 295 77 HOH HOH . G 4 HOH A 77 296 78 HOH HOH . G 4 HOH A 78 297 79 HOH HOH . G 4 HOH A 79 298 80 HOH HOH . G 4 HOH A 80 299 81 HOH HOH . G 4 HOH A 81 300 82 HOH HOH . G 4 HOH A 82 301 83 HOH HOH . G 4 HOH A 83 302 84 HOH HOH . G 4 HOH A 84 303 85 HOH HOH . G 4 HOH A 85 304 86 HOH HOH . G 4 HOH A 86 305 87 HOH HOH . G 4 HOH A 87 306 88 HOH HOH . G 4 HOH A 88 307 89 HOH HOH . G 4 HOH A 89 308 90 HOH HOH . G 4 HOH A 90 309 91 HOH HOH . G 4 HOH A 91 310 92 HOH HOH . G 4 HOH A 92 311 93 HOH HOH . G 4 HOH A 93 312 94 HOH HOH . G 4 HOH A 94 313 95 HOH HOH . G 4 HOH A 95 314 96 HOH HOH . G 4 HOH A 96 315 97 HOH HOH . G 4 HOH A 97 316 98 HOH HOH . G 4 HOH A 98 317 99 HOH HOH . G 4 HOH A 99 318 100 HOH HOH . G 4 HOH A 100 319 101 HOH HOH . G 4 HOH A 101 320 102 HOH HOH . G 4 HOH A 102 321 103 HOH HOH . G 4 HOH A 103 322 104 HOH HOH . G 4 HOH A 104 323 105 HOH HOH . G 4 HOH A 105 324 106 HOH HOH . G 4 HOH A 106 325 107 HOH HOH . G 4 HOH A 107 326 108 HOH HOH . G 4 HOH A 108 327 109 HOH HOH . G 4 HOH A 109 328 110 HOH HOH . G 4 HOH A 110 329 111 HOH HOH . G 4 HOH A 111 330 112 HOH HOH . G 4 HOH A 112 331 113 HOH HOH . G 4 HOH A 113 332 114 HOH HOH . G 4 HOH A 114 333 115 HOH HOH . G 4 HOH A 115 334 116 HOH HOH . G 4 HOH A 116 335 117 HOH HOH . H 4 HOH B 1 217 1 HOH HOH . H 4 HOH B 2 218 2 HOH HOH . H 4 HOH B 3 219 3 HOH HOH . H 4 HOH B 4 220 4 HOH HOH . H 4 HOH B 5 221 5 HOH HOH . H 4 HOH B 6 222 6 HOH HOH . H 4 HOH B 7 223 7 HOH HOH . H 4 HOH B 8 224 8 HOH HOH . H 4 HOH B 9 225 9 HOH HOH . H 4 HOH B 10 226 10 HOH HOH . H 4 HOH B 11 227 11 HOH HOH . H 4 HOH B 12 228 12 HOH HOH . H 4 HOH B 13 229 13 HOH HOH . H 4 HOH B 14 230 14 HOH HOH . H 4 HOH B 15 231 15 HOH HOH . H 4 HOH B 16 232 16 HOH HOH . H 4 HOH B 17 233 17 HOH HOH . H 4 HOH B 18 234 18 HOH HOH . H 4 HOH B 19 235 19 HOH HOH . H 4 HOH B 20 236 20 HOH HOH . H 4 HOH B 21 237 21 HOH HOH . H 4 HOH B 22 238 22 HOH HOH . H 4 HOH B 23 239 23 HOH HOH . H 4 HOH B 24 240 24 HOH HOH . H 4 HOH B 25 241 25 HOH HOH . H 4 HOH B 26 242 26 HOH HOH . H 4 HOH B 27 243 27 HOH HOH . H 4 HOH B 28 244 28 HOH HOH . H 4 HOH B 29 245 29 HOH HOH . H 4 HOH B 30 246 30 HOH HOH . H 4 HOH B 31 247 31 HOH HOH . H 4 HOH B 32 248 32 HOH HOH . H 4 HOH B 33 249 33 HOH HOH . H 4 HOH B 34 250 34 HOH HOH . H 4 HOH B 35 252 35 HOH HOH . H 4 HOH B 36 253 36 HOH HOH . H 4 HOH B 37 254 37 HOH HOH . H 4 HOH B 38 255 38 HOH HOH . H 4 HOH B 39 256 39 HOH HOH . H 4 HOH B 40 257 40 HOH HOH . H 4 HOH B 41 258 41 HOH HOH . H 4 HOH B 42 259 42 HOH HOH . H 4 HOH B 43 260 43 HOH HOH . H 4 HOH B 44 262 44 HOH HOH . H 4 HOH B 45 263 45 HOH HOH . H 4 HOH B 46 264 46 HOH HOH . H 4 HOH B 47 265 47 HOH HOH . H 4 HOH B 48 266 48 HOH HOH . H 4 HOH B 49 267 49 HOH HOH . H 4 HOH B 50 268 50 HOH HOH . H 4 HOH B 51 269 51 HOH HOH . H 4 HOH B 52 270 52 HOH HOH . H 4 HOH B 53 271 53 HOH HOH . H 4 HOH B 54 272 54 HOH HOH . H 4 HOH B 55 273 55 HOH HOH . H 4 HOH B 56 274 56 HOH HOH . H 4 HOH B 57 275 57 HOH HOH . H 4 HOH B 58 276 58 HOH HOH . H 4 HOH B 59 277 59 HOH HOH . H 4 HOH B 60 278 60 HOH HOH . H 4 HOH B 61 279 61 HOH HOH . H 4 HOH B 62 280 62 HOH HOH . H 4 HOH B 63 281 63 HOH HOH . H 4 HOH B 64 282 64 HOH HOH . H 4 HOH B 65 283 65 HOH HOH . H 4 HOH B 66 284 66 HOH HOH . H 4 HOH B 67 285 67 HOH HOH . H 4 HOH B 68 286 68 HOH HOH . H 4 HOH B 69 287 69 HOH HOH . H 4 HOH B 70 288 70 HOH HOH . H 4 HOH B 71 289 71 HOH HOH . H 4 HOH B 72 290 72 HOH HOH . H 4 HOH B 73 291 73 HOH HOH . H 4 HOH B 74 292 74 HOH HOH . H 4 HOH B 75 293 75 HOH HOH . H 4 HOH B 76 294 76 HOH HOH . H 4 HOH B 77 295 77 HOH HOH . H 4 HOH B 78 296 78 HOH HOH . H 4 HOH B 79 297 79 HOH HOH . H 4 HOH B 80 298 80 HOH HOH . H 4 HOH B 81 299 81 HOH HOH . H 4 HOH B 82 300 82 HOH HOH . H 4 HOH B 83 301 83 HOH HOH . H 4 HOH B 84 302 84 HOH HOH . H 4 HOH B 85 303 85 HOH HOH . H 4 HOH B 86 304 86 HOH HOH . H 4 HOH B 87 305 87 HOH HOH . H 4 HOH B 88 306 88 HOH HOH . H 4 HOH B 89 307 89 HOH HOH . H 4 HOH B 90 308 90 HOH HOH . H 4 HOH B 91 309 91 HOH HOH . H 4 HOH B 92 310 92 HOH HOH . H 4 HOH B 93 311 93 HOH HOH . H 4 HOH B 94 312 94 HOH HOH . H 4 HOH B 95 313 95 HOH HOH . H 4 HOH B 96 314 96 HOH HOH . H 4 HOH B 97 315 97 HOH HOH . H 4 HOH B 98 316 98 HOH HOH . H 4 HOH B 99 317 99 HOH HOH . H 4 HOH B 100 318 100 HOH HOH . H 4 HOH B 101 319 101 HOH HOH . H 4 HOH B 102 320 102 HOH HOH . H 4 HOH B 103 321 103 HOH HOH . H 4 HOH B 104 322 104 HOH HOH . H 4 HOH B 105 323 105 HOH HOH . H 4 HOH B 106 324 106 HOH HOH . H 4 HOH B 107 325 107 HOH HOH . H 4 HOH B 108 326 108 HOH HOH . H 4 HOH B 109 327 109 HOH HOH . H 4 HOH B 110 328 110 HOH HOH . H 4 HOH B 111 329 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . F 3 1.878 22.856 25.418 1 28.08 ? P PO4 261 B 1 HETATM 2 O O1 PO4 . . . F 3 2.639 21.926 26.353 1 30.44 ? O1 PO4 261 B 1 HETATM 3 O O2 PO4 . . . F 3 2.716 24.12 25.353 1 29.69 ? O2 PO4 261 B 1 HETATM 4 O O3 PO4 . . . F 3 1.804 22.251 24.048 1 29.06 ? O3 PO4 261 B 1 HETATM 5 O O4 PO4 . . . F 3 0.529 23.273 25.97 1 28.28 ? O4 PO4 261 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #