data_3A9V # _model_server_result.job_id mzuHIhQ6QnsT20pv9-uK0w _model_server_result.datetime_utc '2024-10-12 11:14:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3a9v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":551}' # _entry.id 3A9V # _exptl.entry_id 3A9V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3A9V _cell.length_a 162.34 _cell.length_b 162.34 _cell.length_c 162.34 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3A9V _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 3A9V _atom_sites.fract_transf_matrix[1][1] 0.00616 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00616 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00616 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 551 551 AMP AMP . C 3 HOH A 1 537 1 HOH HOH . C 3 HOH A 2 538 2 HOH HOH . C 3 HOH A 3 539 3 HOH HOH . C 3 HOH A 4 540 4 HOH HOH . C 3 HOH A 5 541 5 HOH HOH . C 3 HOH A 6 542 6 HOH HOH . C 3 HOH A 7 543 7 HOH HOH . C 3 HOH A 8 544 8 HOH HOH . C 3 HOH A 9 545 9 HOH HOH . C 3 HOH A 10 546 10 HOH HOH . C 3 HOH A 11 547 11 HOH HOH . C 3 HOH A 12 548 12 HOH HOH . C 3 HOH A 13 549 13 HOH HOH . C 3 HOH A 14 550 14 HOH HOH . C 3 HOH A 15 552 15 HOH HOH . C 3 HOH A 16 553 16 HOH HOH . C 3 HOH A 17 554 17 HOH HOH . C 3 HOH A 18 555 18 HOH HOH . C 3 HOH A 19 556 19 HOH HOH . C 3 HOH A 20 557 20 HOH HOH . C 3 HOH A 21 558 21 HOH HOH . C 3 HOH A 22 559 22 HOH HOH . C 3 HOH A 23 560 23 HOH HOH . C 3 HOH A 24 561 24 HOH HOH . C 3 HOH A 25 562 25 HOH HOH . C 3 HOH A 26 563 26 HOH HOH . C 3 HOH A 27 564 27 HOH HOH . C 3 HOH A 28 565 28 HOH HOH . C 3 HOH A 29 566 29 HOH HOH . C 3 HOH A 30 567 30 HOH HOH . C 3 HOH A 31 568 31 HOH HOH . C 3 HOH A 32 569 32 HOH HOH . C 3 HOH A 33 570 33 HOH HOH . C 3 HOH A 34 571 34 HOH HOH . C 3 HOH A 35 572 35 HOH HOH . C 3 HOH A 36 573 36 HOH HOH . C 3 HOH A 37 574 37 HOH HOH . C 3 HOH A 38 575 38 HOH HOH . C 3 HOH A 39 576 39 HOH HOH . C 3 HOH A 40 577 40 HOH HOH . C 3 HOH A 41 578 41 HOH HOH . C 3 HOH A 42 579 42 HOH HOH . C 3 HOH A 43 580 43 HOH HOH . C 3 HOH A 44 581 44 HOH HOH . C 3 HOH A 45 582 45 HOH HOH . C 3 HOH A 46 583 46 HOH HOH . C 3 HOH A 47 584 47 HOH HOH . C 3 HOH A 48 585 48 HOH HOH . C 3 HOH A 49 586 49 HOH HOH . C 3 HOH A 50 587 50 HOH HOH . C 3 HOH A 51 588 51 HOH HOH . C 3 HOH A 52 589 52 HOH HOH . C 3 HOH A 53 590 53 HOH HOH . C 3 HOH A 54 591 54 HOH HOH . C 3 HOH A 55 592 55 HOH HOH . C 3 HOH A 56 593 56 HOH HOH . C 3 HOH A 57 594 57 HOH HOH . C 3 HOH A 58 595 58 HOH HOH . C 3 HOH A 59 596 59 HOH HOH . C 3 HOH A 60 597 60 HOH HOH . C 3 HOH A 61 598 61 HOH HOH . C 3 HOH A 62 599 62 HOH HOH . C 3 HOH A 63 600 63 HOH HOH . C 3 HOH A 64 601 64 HOH HOH . C 3 HOH A 65 602 65 HOH HOH . C 3 HOH A 66 603 66 HOH HOH . C 3 HOH A 67 604 67 HOH HOH . C 3 HOH A 68 605 68 HOH HOH . C 3 HOH A 69 606 69 HOH HOH . C 3 HOH A 70 607 70 HOH HOH . C 3 HOH A 71 608 71 HOH HOH . C 3 HOH A 72 609 72 HOH HOH . C 3 HOH A 73 610 73 HOH HOH . C 3 HOH A 74 611 74 HOH HOH . C 3 HOH A 75 612 75 HOH HOH . C 3 HOH A 76 613 76 HOH HOH . C 3 HOH A 77 614 77 HOH HOH . C 3 HOH A 78 615 78 HOH HOH . C 3 HOH A 79 616 79 HOH HOH . C 3 HOH A 80 617 80 HOH HOH . C 3 HOH A 81 618 81 HOH HOH . C 3 HOH A 82 619 82 HOH HOH . C 3 HOH A 83 620 83 HOH HOH . C 3 HOH A 84 621 84 HOH HOH . C 3 HOH A 85 622 85 HOH HOH . C 3 HOH A 86 623 86 HOH HOH . C 3 HOH A 87 624 87 HOH HOH . C 3 HOH A 88 625 88 HOH HOH . C 3 HOH A 89 626 89 HOH HOH . C 3 HOH A 90 627 90 HOH HOH . C 3 HOH A 91 628 91 HOH HOH . C 3 HOH A 92 629 92 HOH HOH . C 3 HOH A 93 630 93 HOH HOH . C 3 HOH A 94 631 94 HOH HOH . C 3 HOH A 95 632 95 HOH HOH . C 3 HOH A 96 633 96 HOH HOH . C 3 HOH A 97 634 97 HOH HOH . C 3 HOH A 98 635 98 HOH HOH . C 3 HOH A 99 636 99 HOH HOH . C 3 HOH A 100 637 100 HOH HOH . C 3 HOH A 101 638 101 HOH HOH . C 3 HOH A 102 639 102 HOH HOH . C 3 HOH A 103 640 103 HOH HOH . C 3 HOH A 104 641 104 HOH HOH . C 3 HOH A 105 642 105 HOH HOH . C 3 HOH A 106 643 106 HOH HOH . C 3 HOH A 107 644 107 HOH HOH . C 3 HOH A 108 645 108 HOH HOH . C 3 HOH A 109 646 109 HOH HOH . C 3 HOH A 110 647 110 HOH HOH . C 3 HOH A 111 648 111 HOH HOH . C 3 HOH A 112 649 112 HOH HOH . C 3 HOH A 113 650 113 HOH HOH . C 3 HOH A 114 651 114 HOH HOH . C 3 HOH A 115 652 115 HOH HOH . C 3 HOH A 116 653 116 HOH HOH . C 3 HOH A 117 654 117 HOH HOH . C 3 HOH A 118 655 118 HOH HOH . C 3 HOH A 119 656 119 HOH HOH . C 3 HOH A 120 657 120 HOH HOH . C 3 HOH A 121 658 121 HOH HOH . C 3 HOH A 122 659 122 HOH HOH . C 3 HOH A 123 660 123 HOH HOH . C 3 HOH A 124 661 124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . B 2 -22.202 -9.707 14.77 1 25.59 ? P AMP 551 A 1 HETATM 2 O O1P AMP . . . B 2 -21.116 -10.089 13.824 1 27.17 ? O1P AMP 551 A 1 HETATM 3 O O2P AMP . . . B 2 -22.266 -10.696 16.021 1 24.44 ? O2P AMP 551 A 1 HETATM 4 O O3P AMP . . . B 2 -22.224 -8.328 15.288 1 25.46 ? O3P AMP 551 A 1 HETATM 5 O O5' AMP . . . B 2 -23.596 -9.995 14.119 1 25.77 ? O5' AMP 551 A 1 HETATM 6 C C5' AMP . . . B 2 -24.021 -9.232 12.978 1 29.1 ? C5' AMP 551 A 1 HETATM 7 C C4' AMP . . . B 2 -25.231 -9.82 12.344 1 26.49 ? C4' AMP 551 A 1 HETATM 8 O O4' AMP . . . B 2 -26.353 -9.433 13.174 1 26.41 ? O4' AMP 551 A 1 HETATM 9 C C3' AMP . . . B 2 -25.554 -9.267 10.982 1 27.05 ? C3' AMP 551 A 1 HETATM 10 O O3' AMP . . . B 2 -24.819 -10.02 10.017 1 27.58 ? O3' AMP 551 A 1 HETATM 11 C C2' AMP . . . B 2 -27.037 -9.449 10.96 1 24.68 ? C2' AMP 551 A 1 HETATM 12 O O2' AMP . . . B 2 -27.439 -10.775 10.656 1 27.75 ? O2' AMP 551 A 1 HETATM 13 C C1' AMP . . . B 2 -27.495 -9.098 12.366 1 25.09 ? C1' AMP 551 A 1 HETATM 14 N N9 AMP . . . B 2 -27.826 -7.652 12.525 1 24.07 ? N9 AMP 551 A 1 HETATM 15 C C8 AMP . . . B 2 -27.052 -6.612 12.99 1 23.84 ? C8 AMP 551 A 1 HETATM 16 N N7 AMP . . . B 2 -27.641 -5.453 13.007 1 25.63 ? N7 AMP 551 A 1 HETATM 17 C C5 AMP . . . B 2 -28.901 -5.747 12.516 1 26.08 ? C5 AMP 551 A 1 HETATM 18 C C6 AMP . . . B 2 -30.06 -4.945 12.268 1 26.71 ? C6 AMP 551 A 1 HETATM 19 N N6 AMP . . . B 2 -30.06 -3.641 12.515 1 25.54 ? N6 AMP 551 A 1 HETATM 20 N N1 AMP . . . B 2 -31.174 -5.544 11.769 1 25.89 ? N1 AMP 551 A 1 HETATM 21 C C2 AMP . . . B 2 -31.162 -6.857 11.523 1 24.26 ? C2 AMP 551 A 1 HETATM 22 N N3 AMP . . . B 2 -30.153 -7.722 11.707 1 24.38 ? N3 AMP 551 A 1 HETATM 23 C C4 AMP . . . B 2 -29.029 -7.084 12.217 1 24.6 ? C4 AMP 551 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #