data_3A9W # _model_server_result.job_id QDkm_kFZlpl4zQbnYn7hqg _model_server_result.datetime_utc '2024-12-17 07:02:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3a9w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":5277}' # _entry.id 3A9W # _exptl.entry_id 3A9W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.21 _cell.angle_gamma 90 _cell.entry_id 3A9W _cell.length_a 150.203 _cell.length_b 46.369 _cell.length_c 89.751 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3A9W _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 237 n n C1 H11 MPD sing 238 n n C1 H12 MPD sing 239 n n C1 H13 MPD sing 240 n n C2 O2 MPD sing 241 n n C2 CM MPD sing 242 n n C2 C3 MPD sing 243 n n O2 HO2 MPD sing 244 n n CM HM1 MPD sing 245 n n CM HM2 MPD sing 246 n n CM HM3 MPD sing 247 n n C3 C4 MPD sing 248 n n C3 H31 MPD sing 249 n n C3 H32 MPD sing 250 n n C4 O4 MPD sing 251 n n C4 C5 MPD sing 252 n n C4 H4 MPD sing 253 n n O4 HO4 MPD sing 254 n n C5 H51 MPD sing 255 n n C5 H52 MPD sing 256 n n C5 H53 MPD sing 257 n n # _atom_sites.entry_id 3A9W _atom_sites.fract_transf_matrix[1][1] 0.006658 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002855 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021566 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012123 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 THR A 1 318 1 THR THR . D 3 NAD A 1 3001 3001 NAD NAD . E 4 MRD A 1 5276 5276 MRD MPD . F 2 THR B 1 318 2 THR THR . G 3 NAD B 1 3002 3002 NAD NAD . H 5 MPD B 1 5277 5277 MPD MPD . I 6 HOH A 1 319 2 HOH TIP . I 6 HOH A 2 320 3 HOH TIP . I 6 HOH A 3 321 7 HOH TIP . I 6 HOH A 4 322 9 HOH TIP . I 6 HOH A 5 323 10 HOH TIP . I 6 HOH A 6 324 11 HOH TIP . I 6 HOH A 7 325 12 HOH TIP . I 6 HOH A 8 326 13 HOH TIP . I 6 HOH A 9 327 14 HOH TIP . I 6 HOH A 10 328 18 HOH TIP . I 6 HOH A 11 329 19 HOH TIP . I 6 HOH A 12 330 20 HOH TIP . I 6 HOH A 13 331 21 HOH TIP . I 6 HOH A 14 332 22 HOH TIP . I 6 HOH A 15 333 25 HOH TIP . I 6 HOH A 16 334 26 HOH TIP . I 6 HOH A 17 335 27 HOH TIP . I 6 HOH A 18 336 29 HOH TIP . I 6 HOH A 19 337 30 HOH TIP . I 6 HOH A 20 338 32 HOH TIP . I 6 HOH A 21 339 33 HOH TIP . I 6 HOH A 22 340 34 HOH TIP . I 6 HOH A 23 341 35 HOH TIP . I 6 HOH A 24 342 36 HOH TIP . I 6 HOH A 25 343 37 HOH TIP . I 6 HOH A 26 344 38 HOH TIP . I 6 HOH A 27 345 40 HOH TIP . I 6 HOH A 28 346 41 HOH TIP . I 6 HOH A 29 347 43 HOH TIP . I 6 HOH A 30 348 44 HOH TIP . I 6 HOH A 31 349 45 HOH TIP . I 6 HOH A 32 350 48 HOH TIP . I 6 HOH A 33 351 49 HOH TIP . I 6 HOH A 34 352 51 HOH TIP . I 6 HOH A 35 353 52 HOH TIP . I 6 HOH A 36 354 54 HOH TIP . I 6 HOH A 37 355 61 HOH TIP . I 6 HOH A 38 356 62 HOH TIP . I 6 HOH A 39 357 63 HOH TIP . I 6 HOH A 40 358 64 HOH TIP . I 6 HOH A 41 359 67 HOH TIP . I 6 HOH A 42 360 68 HOH TIP . I 6 HOH A 43 361 69 HOH TIP . I 6 HOH A 44 362 73 HOH TIP . I 6 HOH A 45 363 75 HOH TIP . I 6 HOH A 46 364 77 HOH TIP . I 6 HOH A 47 365 78 HOH TIP . I 6 HOH A 48 366 80 HOH TIP . I 6 HOH A 49 367 82 HOH TIP . I 6 HOH A 50 368 83 HOH TIP . I 6 HOH A 51 369 85 HOH TIP . I 6 HOH A 52 370 86 HOH TIP . I 6 HOH A 53 371 91 HOH TIP . I 6 HOH A 54 372 92 HOH TIP . I 6 HOH A 55 373 93 HOH TIP . I 6 HOH A 56 374 94 HOH TIP . I 6 HOH A 57 375 95 HOH TIP . I 6 HOH A 58 376 99 HOH TIP . I 6 HOH A 59 377 104 HOH TIP . I 6 HOH A 60 378 105 HOH TIP . I 6 HOH A 61 379 110 HOH TIP . I 6 HOH A 62 380 111 HOH TIP . I 6 HOH A 63 381 114 HOH TIP . I 6 HOH A 64 382 117 HOH TIP . I 6 HOH A 65 383 120 HOH TIP . I 6 HOH A 66 384 121 HOH TIP . I 6 HOH A 67 385 124 HOH TIP . I 6 HOH A 68 386 126 HOH TIP . I 6 HOH A 69 387 127 HOH TIP . I 6 HOH A 70 388 129 HOH TIP . I 6 HOH A 71 389 135 HOH TIP . I 6 HOH A 72 390 141 HOH TIP . I 6 HOH A 73 391 143 HOH TIP . I 6 HOH A 74 392 146 HOH TIP . I 6 HOH A 75 393 147 HOH TIP . I 6 HOH A 76 394 148 HOH TIP . I 6 HOH A 77 395 150 HOH TIP . I 6 HOH A 78 396 152 HOH TIP . I 6 HOH A 79 397 154 HOH TIP . I 6 HOH A 80 398 155 HOH TIP . I 6 HOH A 81 399 156 HOH TIP . I 6 HOH A 82 400 158 HOH TIP . I 6 HOH A 83 401 162 HOH TIP . I 6 HOH A 84 402 166 HOH TIP . I 6 HOH A 85 403 169 HOH TIP . I 6 HOH A 86 404 171 HOH TIP . I 6 HOH A 87 405 172 HOH TIP . I 6 HOH A 88 406 173 HOH TIP . I 6 HOH A 89 407 174 HOH TIP . I 6 HOH A 90 408 175 HOH TIP . I 6 HOH A 91 409 176 HOH TIP . I 6 HOH A 92 410 179 HOH TIP . I 6 HOH A 93 411 182 HOH TIP . I 6 HOH A 94 412 183 HOH TIP . I 6 HOH A 95 413 186 HOH TIP . I 6 HOH A 96 414 187 HOH TIP . I 6 HOH A 97 415 191 HOH TIP . I 6 HOH A 98 416 193 HOH TIP . I 6 HOH A 99 417 194 HOH TIP . I 6 HOH A 100 418 196 HOH TIP . I 6 HOH A 101 419 197 HOH TIP . I 6 HOH A 102 420 198 HOH TIP . I 6 HOH A 103 421 199 HOH TIP . I 6 HOH A 104 422 201 HOH TIP . I 6 HOH A 105 423 203 HOH TIP . I 6 HOH A 106 424 204 HOH TIP . I 6 HOH A 107 425 206 HOH TIP . I 6 HOH A 108 426 207 HOH TIP . I 6 HOH A 109 427 208 HOH TIP . I 6 HOH A 110 428 212 HOH TIP . I 6 HOH A 111 429 214 HOH TIP . I 6 HOH A 112 430 215 HOH TIP . I 6 HOH A 113 431 216 HOH TIP . I 6 HOH A 114 432 218 HOH TIP . I 6 HOH A 115 433 219 HOH TIP . I 6 HOH A 116 434 220 HOH TIP . I 6 HOH A 117 435 221 HOH TIP . I 6 HOH A 118 436 223 HOH TIP . I 6 HOH A 119 437 225 HOH TIP . I 6 HOH A 120 438 226 HOH TIP . I 6 HOH A 121 439 227 HOH TIP . I 6 HOH A 122 440 231 HOH TIP . I 6 HOH A 123 441 232 HOH TIP . I 6 HOH A 124 442 233 HOH TIP . I 6 HOH A 125 443 234 HOH TIP . I 6 HOH A 126 444 235 HOH TIP . I 6 HOH A 127 445 236 HOH TIP . I 6 HOH A 128 446 239 HOH TIP . I 6 HOH A 129 447 240 HOH TIP . I 6 HOH A 130 448 241 HOH TIP . I 6 HOH A 131 449 242 HOH TIP . I 6 HOH A 132 450 243 HOH TIP . I 6 HOH A 133 451 246 HOH TIP . J 6 HOH B 1 319 1 HOH TIP . J 6 HOH B 2 320 4 HOH TIP . J 6 HOH B 3 321 5 HOH TIP . J 6 HOH B 4 322 6 HOH TIP . J 6 HOH B 5 323 8 HOH TIP . J 6 HOH B 6 324 15 HOH TIP . J 6 HOH B 7 325 16 HOH TIP . J 6 HOH B 8 326 17 HOH TIP . J 6 HOH B 9 327 23 HOH TIP . J 6 HOH B 10 328 24 HOH TIP . J 6 HOH B 11 329 28 HOH TIP . J 6 HOH B 12 330 31 HOH TIP . J 6 HOH B 13 331 39 HOH TIP . J 6 HOH B 14 332 42 HOH TIP . J 6 HOH B 15 333 46 HOH TIP . J 6 HOH B 16 334 47 HOH TIP . J 6 HOH B 17 335 50 HOH TIP . J 6 HOH B 18 336 53 HOH TIP . J 6 HOH B 19 337 55 HOH TIP . J 6 HOH B 20 338 56 HOH TIP . J 6 HOH B 21 339 57 HOH TIP . J 6 HOH B 22 340 58 HOH TIP . J 6 HOH B 23 341 59 HOH TIP . J 6 HOH B 24 342 60 HOH TIP . J 6 HOH B 25 343 65 HOH TIP . J 6 HOH B 26 344 66 HOH TIP . J 6 HOH B 27 345 70 HOH TIP . J 6 HOH B 28 346 71 HOH TIP . J 6 HOH B 29 347 72 HOH TIP . J 6 HOH B 30 348 74 HOH TIP . J 6 HOH B 31 349 76 HOH TIP . J 6 HOH B 32 350 79 HOH TIP . J 6 HOH B 33 351 81 HOH TIP . J 6 HOH B 34 352 84 HOH TIP . J 6 HOH B 35 353 87 HOH TIP . J 6 HOH B 36 354 88 HOH TIP . J 6 HOH B 37 355 89 HOH TIP . J 6 HOH B 38 356 90 HOH TIP . J 6 HOH B 39 357 96 HOH TIP . J 6 HOH B 40 358 97 HOH TIP . J 6 HOH B 41 359 98 HOH TIP . J 6 HOH B 42 360 100 HOH TIP . J 6 HOH B 43 361 101 HOH TIP . J 6 HOH B 44 362 102 HOH TIP . J 6 HOH B 45 363 103 HOH TIP . J 6 HOH B 46 364 106 HOH TIP . J 6 HOH B 47 365 107 HOH TIP . J 6 HOH B 48 366 108 HOH TIP . J 6 HOH B 49 367 109 HOH TIP . J 6 HOH B 50 368 112 HOH TIP . J 6 HOH B 51 369 113 HOH TIP . J 6 HOH B 52 370 115 HOH TIP . J 6 HOH B 53 371 116 HOH TIP . J 6 HOH B 54 372 118 HOH TIP . J 6 HOH B 55 373 119 HOH TIP . J 6 HOH B 56 374 122 HOH TIP . J 6 HOH B 57 375 123 HOH TIP . J 6 HOH B 58 376 125 HOH TIP . J 6 HOH B 59 377 128 HOH TIP . J 6 HOH B 60 378 130 HOH TIP . J 6 HOH B 61 379 131 HOH TIP . J 6 HOH B 62 380 132 HOH TIP . J 6 HOH B 63 381 133 HOH TIP . J 6 HOH B 64 382 134 HOH TIP . J 6 HOH B 65 383 136 HOH TIP . J 6 HOH B 66 384 137 HOH TIP . J 6 HOH B 67 385 138 HOH TIP . J 6 HOH B 68 386 139 HOH TIP . J 6 HOH B 69 387 140 HOH TIP . J 6 HOH B 70 388 142 HOH TIP . J 6 HOH B 71 389 144 HOH TIP . J 6 HOH B 72 390 145 HOH TIP . J 6 HOH B 73 391 149 HOH TIP . J 6 HOH B 74 392 151 HOH TIP . J 6 HOH B 75 393 153 HOH TIP . J 6 HOH B 76 394 157 HOH TIP . J 6 HOH B 77 395 159 HOH TIP . J 6 HOH B 78 396 160 HOH TIP . J 6 HOH B 79 397 161 HOH TIP . J 6 HOH B 80 398 163 HOH TIP . J 6 HOH B 81 399 164 HOH TIP . J 6 HOH B 82 400 165 HOH TIP . J 6 HOH B 83 401 167 HOH TIP . J 6 HOH B 84 402 168 HOH TIP . J 6 HOH B 85 403 170 HOH TIP . J 6 HOH B 86 404 177 HOH TIP . J 6 HOH B 87 405 178 HOH TIP . J 6 HOH B 88 406 180 HOH TIP . J 6 HOH B 89 407 181 HOH TIP . J 6 HOH B 90 408 184 HOH TIP . J 6 HOH B 91 409 185 HOH TIP . J 6 HOH B 92 410 188 HOH TIP . J 6 HOH B 93 411 189 HOH TIP . J 6 HOH B 94 412 190 HOH TIP . J 6 HOH B 95 413 192 HOH TIP . J 6 HOH B 96 414 195 HOH TIP . J 6 HOH B 97 415 200 HOH TIP . J 6 HOH B 98 416 202 HOH TIP . J 6 HOH B 99 417 205 HOH TIP . J 6 HOH B 100 418 209 HOH TIP . J 6 HOH B 101 419 210 HOH TIP . J 6 HOH B 102 420 211 HOH TIP . J 6 HOH B 103 421 213 HOH TIP . J 6 HOH B 104 422 217 HOH TIP . J 6 HOH B 105 423 222 HOH TIP . J 6 HOH B 106 424 224 HOH TIP . J 6 HOH B 107 425 228 HOH TIP . J 6 HOH B 108 426 229 HOH TIP . J 6 HOH B 109 427 230 HOH TIP . J 6 HOH B 110 428 237 HOH TIP . J 6 HOH B 111 429 238 HOH TIP . J 6 HOH B 112 430 244 HOH TIP . J 6 HOH B 113 431 245 HOH TIP . J 6 HOH B 114 432 247 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . H 5 -12.372 21.566 3.79 1 29.77 ? C1 MPD 5277 B 1 HETATM 2 C C2 MPD . . . H 5 -13.285 22.752 3.515 1 31.24 ? C2 MPD 5277 B 1 HETATM 3 O O2 MPD . . . H 5 -13.967 22.64 2.289 1 29.99 ? O2 MPD 5277 B 1 HETATM 4 C CM MPD . . . H 5 -14.306 22.829 4.625 1 31.3 ? CM MPD 5277 B 1 HETATM 5 C C3 MPD . . . H 5 -12.52 24.042 3.314 1 32.32 ? C3 MPD 5277 B 1 HETATM 6 C C4 MPD . . . H 5 -12.02 24.65 4.568 1 31.54 ? C4 MPD 5277 B 1 HETATM 7 O O4 MPD . . . H 5 -11.408 23.609 5.189 1 34.11 ? O4 MPD 5277 B 1 HETATM 8 C C5 MPD . . . H 5 -10.945 25.673 4.296 1 30.24 ? C5 MPD 5277 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #