data_3AAW # _model_server_result.job_id vJv-EZMlRqr2r9F3CehT9w _model_server_result.datetime_utc '2024-11-24 18:40:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3aaw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":601}' # _entry.id 3AAW # _exptl.entry_id 3AAW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.195 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description LYSINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3AAW _cell.length_a 162.232 _cell.length_b 162.232 _cell.length_c 133.926 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AAW _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N ? 4 J N N # _chem_comp.formula 'C6 H15 N2 O2 1' _chem_comp.formula_weight 147.195 _chem_comp.id LYS _chem_comp.mon_nstd_flag y _chem_comp.name LYSINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA LYS sing 194 n n N H LYS sing 195 n n N H2 LYS sing 196 n n CA C LYS sing 197 n n CA CB LYS sing 198 n n CA HA LYS sing 199 n n C O LYS doub 200 n n C OXT LYS sing 201 n n CB CG LYS sing 202 n n CB HB2 LYS sing 203 n n CB HB3 LYS sing 204 n n CG CD LYS sing 205 n n CG HG2 LYS sing 206 n n CG HG3 LYS sing 207 n n CD CE LYS sing 208 n n CD HD2 LYS sing 209 n n CD HD3 LYS sing 210 n n CE NZ LYS sing 211 n n CE HE2 LYS sing 212 n n CE HE3 LYS sing 213 n n NZ HZ1 LYS sing 214 n n NZ HZ2 LYS sing 215 n n NZ HZ3 LYS sing 216 n n OXT HXT LYS sing 217 n n # _atom_sites.entry_id 3AAW _atom_sites.fract_transf_matrix[1][1] 0.006164 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006164 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007467 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 THR A 1 501 501 THR THR . F 4 LYS A 1 601 601 LYS LYS . G 3 THR B 1 201 201 THR THR . H 4 LYS C 1 601 601 LYS LYS . I 3 THR C 1 501 501 THR THR . J 4 LYS C 1 701 701 LYS LYS . K 3 THR D 1 201 201 THR THR . L 5 HOH A 1 602 2 HOH HOH . L 5 HOH A 2 603 3 HOH HOH . L 5 HOH A 3 604 8 HOH HOH . L 5 HOH A 4 605 10 HOH HOH . L 5 HOH A 5 606 12 HOH HOH . L 5 HOH A 6 607 13 HOH HOH . L 5 HOH A 7 608 15 HOH HOH . L 5 HOH A 8 609 17 HOH HOH . L 5 HOH A 9 610 18 HOH HOH . L 5 HOH A 10 611 22 HOH HOH . L 5 HOH A 11 612 23 HOH HOH . L 5 HOH A 12 613 25 HOH HOH . L 5 HOH A 13 614 29 HOH HOH . L 5 HOH A 14 615 32 HOH HOH . L 5 HOH A 15 616 33 HOH HOH . L 5 HOH A 16 617 42 HOH HOH . L 5 HOH A 17 619 48 HOH HOH . L 5 HOH A 18 620 50 HOH HOH . L 5 HOH A 19 621 54 HOH HOH . L 5 HOH A 20 622 55 HOH HOH . L 5 HOH A 21 623 56 HOH HOH . L 5 HOH A 22 624 57 HOH HOH . L 5 HOH A 23 625 60 HOH HOH . L 5 HOH A 24 626 62 HOH HOH . L 5 HOH A 25 627 69 HOH HOH . L 5 HOH A 26 628 70 HOH HOH . L 5 HOH A 27 629 71 HOH HOH . L 5 HOH A 28 630 75 HOH HOH . L 5 HOH A 29 631 80 HOH HOH . L 5 HOH A 30 632 82 HOH HOH . L 5 HOH A 31 633 83 HOH HOH . L 5 HOH A 32 634 87 HOH HOH . L 5 HOH A 33 635 92 HOH HOH . L 5 HOH A 34 636 93 HOH HOH . L 5 HOH A 35 637 95 HOH HOH . L 5 HOH A 36 638 102 HOH HOH . L 5 HOH A 37 639 103 HOH HOH . L 5 HOH A 38 640 105 HOH HOH . L 5 HOH A 39 641 107 HOH HOH . L 5 HOH A 40 642 108 HOH HOH . L 5 HOH A 41 643 110 HOH HOH . L 5 HOH A 42 644 115 HOH HOH . L 5 HOH A 43 645 119 HOH HOH . L 5 HOH A 44 646 122 HOH HOH . L 5 HOH A 45 647 124 HOH HOH . L 5 HOH A 46 648 125 HOH HOH . L 5 HOH A 47 649 130 HOH HOH . L 5 HOH A 48 650 131 HOH HOH . L 5 HOH A 49 651 133 HOH HOH . L 5 HOH A 50 652 135 HOH HOH . L 5 HOH A 51 653 136 HOH HOH . L 5 HOH A 52 654 137 HOH HOH . L 5 HOH A 53 655 142 HOH HOH . L 5 HOH A 54 656 144 HOH HOH . L 5 HOH A 55 657 145 HOH HOH . L 5 HOH A 56 658 152 HOH HOH . L 5 HOH A 57 659 155 HOH HOH . L 5 HOH A 58 660 158 HOH HOH . L 5 HOH A 59 661 163 HOH HOH . L 5 HOH A 60 662 166 HOH HOH . L 5 HOH A 61 663 169 HOH HOH . L 5 HOH A 62 664 174 HOH HOH . L 5 HOH A 63 665 176 HOH HOH . L 5 HOH A 64 666 177 HOH HOH . L 5 HOH A 65 667 178 HOH HOH . L 5 HOH A 66 668 180 HOH HOH . L 5 HOH A 67 669 181 HOH HOH . L 5 HOH A 68 670 184 HOH HOH . L 5 HOH A 69 671 188 HOH HOH . L 5 HOH A 70 672 193 HOH HOH . L 5 HOH A 71 673 197 HOH HOH . L 5 HOH A 72 674 211 HOH HOH . L 5 HOH A 73 675 214 HOH HOH . L 5 HOH A 74 676 226 HOH HOH . L 5 HOH A 75 716 46 HOH HOH . L 5 HOH A 76 717 47 HOH HOH . L 5 HOH A 77 770 194 HOH HOH . M 5 HOH B 1 179 179 HOH HOH . M 5 HOH B 2 183 183 HOH HOH . M 5 HOH B 3 185 185 HOH HOH . M 5 HOH B 4 186 186 HOH HOH . M 5 HOH B 5 187 187 HOH HOH . M 5 HOH B 6 195 195 HOH HOH . M 5 HOH B 7 202 202 HOH HOH . M 5 HOH B 8 203 51 HOH HOH . M 5 HOH B 9 204 52 HOH HOH . M 5 HOH B 10 205 53 HOH HOH . M 5 HOH B 11 206 64 HOH HOH . M 5 HOH B 12 207 65 HOH HOH . M 5 HOH B 13 208 66 HOH HOH . M 5 HOH B 14 209 67 HOH HOH . M 5 HOH B 15 210 68 HOH HOH . M 5 HOH B 16 211 77 HOH HOH . M 5 HOH B 17 212 100 HOH HOH . M 5 HOH B 18 213 106 HOH HOH . M 5 HOH B 19 214 168 HOH HOH . M 5 HOH B 20 215 201 HOH HOH . M 5 HOH B 21 219 219 HOH HOH . N 5 HOH C 1 677 228 HOH HOH . N 5 HOH C 2 678 45 HOH HOH . N 5 HOH C 3 679 230 HOH HOH . N 5 HOH C 4 702 4 HOH HOH . N 5 HOH C 5 703 5 HOH HOH . N 5 HOH C 6 704 6 HOH HOH . N 5 HOH C 7 705 14 HOH HOH . N 5 HOH C 8 706 16 HOH HOH . N 5 HOH C 9 707 20 HOH HOH . N 5 HOH C 10 708 24 HOH HOH . N 5 HOH C 11 709 27 HOH HOH . N 5 HOH C 12 710 30 HOH HOH . N 5 HOH C 13 711 31 HOH HOH . N 5 HOH C 14 712 38 HOH HOH . N 5 HOH C 15 713 39 HOH HOH . N 5 HOH C 16 714 40 HOH HOH . N 5 HOH C 17 715 43 HOH HOH . N 5 HOH C 18 718 49 HOH HOH . N 5 HOH C 19 719 59 HOH HOH . N 5 HOH C 20 720 63 HOH HOH . N 5 HOH C 21 721 74 HOH HOH . N 5 HOH C 22 722 76 HOH HOH . N 5 HOH C 23 723 78 HOH HOH . N 5 HOH C 24 724 79 HOH HOH . N 5 HOH C 25 725 81 HOH HOH . N 5 HOH C 26 726 86 HOH HOH . N 5 HOH C 27 727 88 HOH HOH . N 5 HOH C 28 728 90 HOH HOH . N 5 HOH C 29 729 91 HOH HOH . N 5 HOH C 30 730 96 HOH HOH . N 5 HOH C 31 731 97 HOH HOH . N 5 HOH C 32 732 98 HOH HOH . N 5 HOH C 33 733 99 HOH HOH . N 5 HOH C 34 734 101 HOH HOH . N 5 HOH C 35 735 104 HOH HOH . N 5 HOH C 36 736 109 HOH HOH . N 5 HOH C 37 737 111 HOH HOH . N 5 HOH C 38 738 112 HOH HOH . N 5 HOH C 39 739 113 HOH HOH . N 5 HOH C 40 740 114 HOH HOH . N 5 HOH C 41 741 116 HOH HOH . N 5 HOH C 42 742 117 HOH HOH . N 5 HOH C 43 743 118 HOH HOH . N 5 HOH C 44 744 121 HOH HOH . N 5 HOH C 45 745 126 HOH HOH . N 5 HOH C 46 746 127 HOH HOH . N 5 HOH C 47 747 128 HOH HOH . N 5 HOH C 48 748 132 HOH HOH . N 5 HOH C 49 749 140 HOH HOH . N 5 HOH C 50 750 141 HOH HOH . N 5 HOH C 51 751 143 HOH HOH . N 5 HOH C 52 752 148 HOH HOH . N 5 HOH C 53 753 150 HOH HOH . N 5 HOH C 54 754 151 HOH HOH . N 5 HOH C 55 755 154 HOH HOH . N 5 HOH C 56 756 156 HOH HOH . N 5 HOH C 57 757 159 HOH HOH . N 5 HOH C 58 758 161 HOH HOH . N 5 HOH C 59 759 162 HOH HOH . N 5 HOH C 60 760 165 HOH HOH . N 5 HOH C 61 761 167 HOH HOH . N 5 HOH C 62 762 170 HOH HOH . N 5 HOH C 63 763 171 HOH HOH . N 5 HOH C 64 764 173 HOH HOH . N 5 HOH C 65 765 175 HOH HOH . N 5 HOH C 66 766 182 HOH HOH . N 5 HOH C 67 767 190 HOH HOH . N 5 HOH C 68 768 191 HOH HOH . N 5 HOH C 69 769 192 HOH HOH . N 5 HOH C 70 771 204 HOH HOH . N 5 HOH C 71 772 207 HOH HOH . N 5 HOH C 72 773 208 HOH HOH . N 5 HOH C 73 774 209 HOH HOH . N 5 HOH C 74 775 210 HOH HOH . N 5 HOH C 75 776 215 HOH HOH . N 5 HOH C 76 777 216 HOH HOH . N 5 HOH C 77 778 218 HOH HOH . N 5 HOH C 78 779 221 HOH HOH . N 5 HOH C 79 780 222 HOH HOH . N 5 HOH C 80 781 223 HOH HOH . N 5 HOH C 81 782 224 HOH HOH . N 5 HOH C 82 783 225 HOH HOH . N 5 HOH C 83 784 227 HOH HOH . N 5 HOH C 84 785 229 HOH HOH . O 5 HOH D 1 189 189 HOH HOH . O 5 HOH D 2 196 196 HOH HOH . O 5 HOH D 3 202 1 HOH HOH . O 5 HOH D 4 203 203 HOH HOH . O 5 HOH D 5 204 7 HOH HOH . O 5 HOH D 6 205 9 HOH HOH . O 5 HOH D 7 206 206 HOH HOH . O 5 HOH D 8 207 11 HOH HOH . O 5 HOH D 9 208 19 HOH HOH . O 5 HOH D 10 209 21 HOH HOH . O 5 HOH D 11 210 26 HOH HOH . O 5 HOH D 12 211 28 HOH HOH . O 5 HOH D 13 212 34 HOH HOH . O 5 HOH D 14 213 35 HOH HOH . O 5 HOH D 15 214 36 HOH HOH . O 5 HOH D 16 215 37 HOH HOH . O 5 HOH D 17 216 41 HOH HOH . O 5 HOH D 18 217 217 HOH HOH . O 5 HOH D 19 219 58 HOH HOH . O 5 HOH D 20 220 220 HOH HOH . O 5 HOH D 21 221 61 HOH HOH . O 5 HOH D 22 222 72 HOH HOH . O 5 HOH D 23 223 73 HOH HOH . O 5 HOH D 24 224 84 HOH HOH . O 5 HOH D 25 225 85 HOH HOH . O 5 HOH D 26 226 89 HOH HOH . O 5 HOH D 27 227 120 HOH HOH . O 5 HOH D 28 228 123 HOH HOH . O 5 HOH D 29 229 129 HOH HOH . O 5 HOH D 30 231 134 HOH HOH . O 5 HOH D 31 232 138 HOH HOH . O 5 HOH D 32 233 139 HOH HOH . O 5 HOH D 33 234 146 HOH HOH . O 5 HOH D 34 235 149 HOH HOH . O 5 HOH D 35 236 153 HOH HOH . O 5 HOH D 36 237 157 HOH HOH . O 5 HOH D 37 238 160 HOH HOH . O 5 HOH D 38 239 164 HOH HOH . O 5 HOH D 39 240 172 HOH HOH . O 5 HOH D 40 618 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N LYS . . . H 4 10.183 46.101 -26.879 1 40.28 ? N LYS 601 C 1 HETATM 2 C CA LYS . . . H 4 10.577 44.662 -26.853 1 40.7 ? CA LYS 601 C 1 HETATM 3 C C LYS . . . H 4 11.912 44.496 -26.142 1 40.81 ? C LYS 601 C 1 HETATM 4 O O LYS . . . H 4 12.543 45.492 -25.783 1 40.72 ? O LYS 601 C 1 HETATM 5 C CB LYS . . . H 4 10.643 44.091 -28.278 1 40.57 ? CB LYS 601 C 1 HETATM 6 C CG LYS . . . H 4 11.508 44.905 -29.239 1 40.67 ? CG LYS 601 C 1 HETATM 7 C CD LYS . . . H 4 11.53 44.316 -30.643 1 40.51 ? CD LYS 601 C 1 HETATM 8 C CE LYS . . . H 4 10.316 44.739 -31.471 1 39.96 ? CE LYS 601 C 1 HETATM 9 N NZ LYS . . . H 4 10.281 46.206 -31.742 1 39.22 ? NZ LYS 601 C 1 HETATM 10 O OXT LYS . . . H 4 12.375 43.374 -25.899 1 41.21 ? OXT LYS 601 C 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 496 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #