data_3AB1 # _model_server_result.job_id mAm0UeJ8qlKjvTq3U9qEww _model_server_result.datetime_utc '2024-12-05 19:36:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ab1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":361}' # _entry.id 3AB1 # _exptl.entry_id 3AB1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3AB1 _cell.length_a 100.514 _cell.length_b 127.971 _cell.length_c 128.353 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AB1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 3AB1 _atom_sites.fract_transf_matrix[1][1] 0.009949 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007814 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007791 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 361 361 FAD FAD . D 2 FAD B 1 361 361 FAD FAD . E 3 HOH A 1 406 406 HOH HOH . E 3 HOH A 2 408 408 HOH HOH . E 3 HOH A 3 414 414 HOH HOH . E 3 HOH A 4 415 415 HOH HOH . E 3 HOH A 5 420 420 HOH HOH . E 3 HOH A 6 421 421 HOH HOH . E 3 HOH A 7 422 422 HOH HOH . E 3 HOH A 8 423 423 HOH HOH . E 3 HOH A 9 424 424 HOH HOH . E 3 HOH A 10 425 425 HOH HOH . E 3 HOH A 11 426 426 HOH HOH . E 3 HOH A 12 427 427 HOH HOH . E 3 HOH A 13 433 433 HOH HOH . E 3 HOH A 14 434 434 HOH HOH . E 3 HOH A 15 435 435 HOH HOH . E 3 HOH A 16 436 436 HOH HOH . E 3 HOH A 17 437 437 HOH HOH . E 3 HOH A 18 438 438 HOH HOH . E 3 HOH A 19 439 439 HOH HOH . E 3 HOH A 20 440 440 HOH HOH . E 3 HOH A 21 442 442 HOH HOH . E 3 HOH A 22 443 443 HOH HOH . E 3 HOH A 23 447 447 HOH HOH . E 3 HOH A 24 448 448 HOH HOH . E 3 HOH A 25 457 457 HOH HOH . E 3 HOH A 26 459 459 HOH HOH . E 3 HOH A 27 460 460 HOH HOH . E 3 HOH A 28 461 461 HOH HOH . E 3 HOH A 29 462 462 HOH HOH . E 3 HOH A 30 465 465 HOH HOH . E 3 HOH A 31 466 466 HOH HOH . E 3 HOH A 32 469 469 HOH HOH . E 3 HOH A 33 470 470 HOH HOH . E 3 HOH A 34 471 471 HOH HOH . E 3 HOH A 35 472 472 HOH HOH . E 3 HOH A 36 474 474 HOH HOH . E 3 HOH A 37 478 478 HOH HOH . E 3 HOH A 38 479 479 HOH HOH . E 3 HOH A 39 482 482 HOH HOH . E 3 HOH A 40 483 483 HOH HOH . E 3 HOH A 41 484 484 HOH HOH . E 3 HOH A 42 485 485 HOH HOH . E 3 HOH A 43 486 486 HOH HOH . E 3 HOH A 44 491 491 HOH HOH . E 3 HOH A 45 492 492 HOH HOH . E 3 HOH A 46 493 493 HOH HOH . E 3 HOH A 47 494 494 HOH HOH . E 3 HOH A 48 496 496 HOH HOH . F 3 HOH B 1 401 401 HOH HOH . F 3 HOH B 2 402 402 HOH HOH . F 3 HOH B 3 403 403 HOH HOH . F 3 HOH B 4 404 404 HOH HOH . F 3 HOH B 5 405 405 HOH HOH . F 3 HOH B 6 407 407 HOH HOH . F 3 HOH B 7 409 409 HOH HOH . F 3 HOH B 8 410 410 HOH HOH . F 3 HOH B 9 411 411 HOH HOH . F 3 HOH B 10 412 412 HOH HOH . F 3 HOH B 11 413 413 HOH HOH . F 3 HOH B 12 416 416 HOH HOH . F 3 HOH B 13 417 417 HOH HOH . F 3 HOH B 14 418 418 HOH HOH . F 3 HOH B 15 419 419 HOH HOH . F 3 HOH B 16 428 428 HOH HOH . F 3 HOH B 17 429 429 HOH HOH . F 3 HOH B 18 430 430 HOH HOH . F 3 HOH B 19 431 431 HOH HOH . F 3 HOH B 20 432 432 HOH HOH . F 3 HOH B 21 441 441 HOH HOH . F 3 HOH B 22 444 444 HOH HOH . F 3 HOH B 23 445 445 HOH HOH . F 3 HOH B 24 446 446 HOH HOH . F 3 HOH B 25 449 449 HOH HOH . F 3 HOH B 26 450 450 HOH HOH . F 3 HOH B 27 451 451 HOH HOH . F 3 HOH B 28 452 452 HOH HOH . F 3 HOH B 29 453 453 HOH HOH . F 3 HOH B 30 454 454 HOH HOH . F 3 HOH B 31 455 455 HOH HOH . F 3 HOH B 32 456 456 HOH HOH . F 3 HOH B 33 458 458 HOH HOH . F 3 HOH B 34 463 463 HOH HOH . F 3 HOH B 35 464 464 HOH HOH . F 3 HOH B 36 467 467 HOH HOH . F 3 HOH B 37 468 468 HOH HOH . F 3 HOH B 38 473 473 HOH HOH . F 3 HOH B 39 475 475 HOH HOH . F 3 HOH B 40 476 476 HOH HOH . F 3 HOH B 41 477 477 HOH HOH . F 3 HOH B 42 480 480 HOH HOH . F 3 HOH B 43 481 481 HOH HOH . F 3 HOH B 44 487 487 HOH HOH . F 3 HOH B 45 488 488 HOH HOH . F 3 HOH B 46 489 489 HOH HOH . F 3 HOH B 47 490 490 HOH HOH . F 3 HOH B 48 495 495 HOH HOH . F 3 HOH B 49 497 497 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . D 2 36.789 44.005 76.179 1 23.97 ? PA FAD 361 B 1 HETATM 2 O O1A FAD . . . D 2 35.543 43.146 76.219 1 25.43 ? O1A FAD 361 B 1 HETATM 3 O O2A FAD . . . D 2 37.316 44.343 77.553 1 23.46 ? O2A FAD 361 B 1 HETATM 4 O O5B FAD . . . D 2 36.537 45.348 75.353 1 24.64 ? O5B FAD 361 B 1 HETATM 5 C C5B FAD . . . D 2 35.821 45.381 74.143 1 24.62 ? C5B FAD 361 B 1 HETATM 6 C C4B FAD . . . D 2 35.177 46.755 74.005 1 25.16 ? C4B FAD 361 B 1 HETATM 7 O O4B FAD . . . D 2 34.648 46.876 72.7 1 26.1 ? O4B FAD 361 B 1 HETATM 8 C C3B FAD . . . D 2 34.001 46.961 74.952 1 25.33 ? C3B FAD 361 B 1 HETATM 9 O O3B FAD . . . D 2 34.178 48.195 75.617 1 26.22 ? O3B FAD 361 B 1 HETATM 10 C C2B FAD . . . D 2 32.768 46.979 74.056 1 25.14 ? C2B FAD 361 B 1 HETATM 11 O O2B FAD . . . D 2 31.74 47.832 74.522 1 25.56 ? O2B FAD 361 B 1 HETATM 12 C C1B FAD . . . D 2 33.361 47.465 72.749 1 25.15 ? C1B FAD 361 B 1 HETATM 13 N N9A FAD . . . D 2 32.639 47.054 71.531 1 25.24 ? N9A FAD 361 B 1 HETATM 14 C C8A FAD . . . D 2 32.319 45.775 71.179 1 24.7 ? C8A FAD 361 B 1 HETATM 15 N N7A FAD . . . D 2 31.696 45.812 69.989 1 23.81 ? N7A FAD 361 B 1 HETATM 16 C C5A FAD . . . D 2 31.629 47.085 69.569 1 23.76 ? C5A FAD 361 B 1 HETATM 17 C C6A FAD . . . D 2 31.087 47.653 68.422 1 24.7 ? C6A FAD 361 B 1 HETATM 18 N N6A FAD . . . D 2 30.422 46.882 67.556 1 24.69 ? N6A FAD 361 B 1 HETATM 19 N N1A FAD . . . D 2 31.159 49.024 68.249 1 24.77 ? N1A FAD 361 B 1 HETATM 20 C C2A FAD . . . D 2 31.758 49.822 69.214 1 25.07 ? C2A FAD 361 B 1 HETATM 21 N N3A FAD . . . D 2 32.293 49.235 70.355 1 25.33 ? N3A FAD 361 B 1 HETATM 22 C C4A FAD . . . D 2 32.226 47.886 70.525 1 23.89 ? C4A FAD 361 B 1 HETATM 23 N N1 FAD . . . D 2 41.595 39.022 82.803 1 25.96 ? N1 FAD 361 B 1 HETATM 24 C C2 FAD . . . D 2 42.842 39.065 83.387 1 26 ? C2 FAD 361 B 1 HETATM 25 O O2 FAD . . . D 2 43.846 38.972 82.7 1 26.29 ? O2 FAD 361 B 1 HETATM 26 N N3 FAD . . . D 2 42.968 39.204 84.748 1 26.04 ? N3 FAD 361 B 1 HETATM 27 C C4 FAD . . . D 2 41.837 39.313 85.536 1 26.23 ? C4 FAD 361 B 1 HETATM 28 O O4 FAD . . . D 2 41.956 39.445 86.75 1 26.42 ? O4 FAD 361 B 1 HETATM 29 C C4X FAD . . . D 2 40.571 39.267 84.959 1 26.34 ? C4X FAD 361 B 1 HETATM 30 N N5 FAD . . . D 2 39.444 39.373 85.754 1 26.07 ? N5 FAD 361 B 1 HETATM 31 C C5X FAD . . . D 2 38.189 39.327 85.178 1 26.45 ? C5X FAD 361 B 1 HETATM 32 C C6 FAD . . . D 2 37.062 39.441 85.999 1 26.63 ? C6 FAD 361 B 1 HETATM 33 C C7 FAD . . . D 2 35.783 39.406 85.441 1 26.43 ? C7 FAD 361 B 1 HETATM 34 C C7M FAD . . . D 2 34.592 39.526 86.352 1 26.09 ? C7M FAD 361 B 1 HETATM 35 C C8 FAD . . . D 2 35.637 39.267 84.053 1 26.75 ? C8 FAD 361 B 1 HETATM 36 C C8M FAD . . . D 2 34.273 39.223 83.398 1 26.17 ? C8M FAD 361 B 1 HETATM 37 C C9 FAD . . . D 2 36.775 39.168 83.244 1 26.22 ? C9 FAD 361 B 1 HETATM 38 C C9A FAD . . . D 2 38.055 39.191 83.791 1 25.87 ? C9A FAD 361 B 1 HETATM 39 N N10 FAD . . . D 2 39.193 39.092 82.981 1 25.69 ? N10 FAD 361 B 1 HETATM 40 C C10 FAD . . . D 2 40.45 39.129 83.572 1 26.02 ? C10 FAD 361 B 1 HETATM 41 C C1' FAD . . . D 2 39.086 38.968 81.479 1 22.85 ? C1' FAD 361 B 1 HETATM 42 C C2' FAD . . . D 2 39.501 40.286 80.832 1 21.04 ? C2' FAD 361 B 1 HETATM 43 O O2' FAD . . . D 2 38.667 41.316 81.314 1 22.94 ? O2' FAD 361 B 1 HETATM 44 C C3' FAD . . . D 2 39.441 40.258 79.309 1 20.59 ? C3' FAD 361 B 1 HETATM 45 O O3' FAD . . . D 2 40.388 39.336 78.806 1 20 ? O3' FAD 361 B 1 HETATM 46 C C4' FAD . . . D 2 39.725 41.637 78.703 1 19.58 ? C4' FAD 361 B 1 HETATM 47 O O4' FAD . . . D 2 38.776 42.597 79.125 1 18.02 ? O4' FAD 361 B 1 HETATM 48 C C5' FAD . . . D 2 39.703 41.587 77.187 1 19.57 ? C5' FAD 361 B 1 HETATM 49 O O5' FAD . . . D 2 39.973 42.882 76.724 1 21.46 ? O5' FAD 361 B 1 HETATM 50 P P FAD . . . D 2 39.437 43.387 75.313 1 21.86 ? P FAD 361 B 1 HETATM 51 O O1P FAD . . . D 2 39.693 44.873 75.196 1 22.87 ? O1P FAD 361 B 1 HETATM 52 O O2P FAD . . . D 2 40.044 42.612 74.179 1 21.67 ? O2P FAD 361 B 1 HETATM 53 O O3P FAD . . . D 2 37.849 43.148 75.324 1 23.54 ? O3P FAD 361 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 53 #