data_3ABI # _model_server_result.job_id 8ntAW_HXfr4u_VYVeiUxJQ _model_server_result.datetime_utc '2025-03-09 02:19:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3abi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 3ABI # _exptl.entry_id 3ABI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3ABI _cell.length_a 75.291 _cell.length_b 113.011 _cell.length_c 122.456 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ABI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 3ABI _atom_sites.fract_transf_matrix[1][1] 0.013282 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008849 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008166 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 2001 2001 SO4 SO4 . D 3 NAD A 1 1001 1001 NAD NAD . E 2 SO4 B 1 2002 2002 SO4 SO4 . F 3 NAD B 1 1002 1002 NAD NAD . G 4 HOH A 1 2002 2002 HOH HOH . G 4 HOH A 2 2003 2003 HOH HOH . G 4 HOH A 3 2004 2004 HOH HOH . G 4 HOH A 4 2005 2005 HOH HOH . G 4 HOH A 5 2006 2006 HOH HOH . G 4 HOH A 6 2007 2007 HOH HOH . G 4 HOH A 7 2008 2008 HOH HOH . G 4 HOH A 8 2009 2009 HOH HOH . G 4 HOH A 9 2010 2010 HOH HOH . G 4 HOH A 10 2011 2011 HOH HOH . G 4 HOH A 11 2012 2012 HOH HOH . G 4 HOH A 12 2013 2013 HOH HOH . G 4 HOH A 13 2014 2014 HOH HOH . G 4 HOH A 14 2015 2015 HOH HOH . G 4 HOH A 15 2016 2016 HOH HOH . G 4 HOH A 16 2017 2017 HOH HOH . G 4 HOH A 17 2018 2018 HOH HOH . G 4 HOH A 18 2019 2019 HOH HOH . G 4 HOH A 19 2020 2020 HOH HOH . G 4 HOH A 20 2021 2021 HOH HOH . G 4 HOH A 21 2022 2022 HOH HOH . G 4 HOH A 22 2023 2023 HOH HOH . G 4 HOH A 23 2024 2024 HOH HOH . G 4 HOH A 24 2025 2025 HOH HOH . G 4 HOH A 25 2026 2026 HOH HOH . G 4 HOH A 26 2027 2027 HOH HOH . G 4 HOH A 27 2028 2028 HOH HOH . G 4 HOH A 28 2029 2029 HOH HOH . G 4 HOH A 29 2030 2030 HOH HOH . G 4 HOH A 30 2031 2031 HOH HOH . G 4 HOH A 31 2032 2032 HOH HOH . G 4 HOH A 32 2033 2033 HOH HOH . G 4 HOH A 33 2034 2034 HOH HOH . G 4 HOH A 34 2035 2035 HOH HOH . G 4 HOH A 35 2036 2036 HOH HOH . G 4 HOH A 36 2037 2037 HOH HOH . G 4 HOH A 37 2038 2038 HOH HOH . G 4 HOH A 38 2039 2039 HOH HOH . G 4 HOH A 39 2040 2040 HOH HOH . G 4 HOH A 40 2041 2041 HOH HOH . G 4 HOH A 41 2042 2042 HOH HOH . G 4 HOH A 42 2043 2043 HOH HOH . G 4 HOH A 43 2044 2044 HOH HOH . G 4 HOH A 44 2045 2045 HOH HOH . G 4 HOH A 45 2046 2046 HOH HOH . G 4 HOH A 46 2047 2047 HOH HOH . G 4 HOH A 47 2048 2048 HOH HOH . G 4 HOH A 48 2049 2049 HOH HOH . G 4 HOH A 49 2050 2050 HOH HOH . G 4 HOH A 50 2051 2051 HOH HOH . G 4 HOH A 51 2052 2052 HOH HOH . G 4 HOH A 52 2053 2053 HOH HOH . G 4 HOH A 53 2054 2054 HOH HOH . G 4 HOH A 54 2055 2055 HOH HOH . G 4 HOH A 55 2056 2056 HOH HOH . G 4 HOH A 56 2057 2057 HOH HOH . G 4 HOH A 57 2058 2058 HOH HOH . G 4 HOH A 58 2059 2059 HOH HOH . G 4 HOH A 59 2060 2060 HOH HOH . G 4 HOH A 60 2061 2061 HOH HOH . G 4 HOH A 61 2062 2062 HOH HOH . G 4 HOH A 62 2063 2063 HOH HOH . G 4 HOH A 63 2064 2064 HOH HOH . G 4 HOH A 64 2065 2065 HOH HOH . G 4 HOH A 65 2066 2066 HOH HOH . G 4 HOH A 66 2067 2064 HOH HOH . H 4 HOH B 1 2003 2003 HOH HOH . H 4 HOH B 2 2004 2004 HOH HOH . H 4 HOH B 3 2005 2005 HOH HOH . H 4 HOH B 4 2006 2006 HOH HOH . H 4 HOH B 5 2007 2007 HOH HOH . H 4 HOH B 6 2008 2008 HOH HOH . H 4 HOH B 7 2009 2009 HOH HOH . H 4 HOH B 8 2010 2010 HOH HOH . H 4 HOH B 9 2011 2011 HOH HOH . H 4 HOH B 10 2012 2012 HOH HOH . H 4 HOH B 11 2013 2013 HOH HOH . H 4 HOH B 12 2014 2014 HOH HOH . H 4 HOH B 13 2015 2015 HOH HOH . H 4 HOH B 14 2016 2016 HOH HOH . H 4 HOH B 15 2017 2017 HOH HOH . H 4 HOH B 16 2018 2018 HOH HOH . H 4 HOH B 17 2019 2019 HOH HOH . H 4 HOH B 18 2020 2020 HOH HOH . H 4 HOH B 19 2021 2021 HOH HOH . H 4 HOH B 20 2022 2022 HOH HOH . H 4 HOH B 21 2023 2023 HOH HOH . H 4 HOH B 22 2024 2024 HOH HOH . H 4 HOH B 23 2025 2025 HOH HOH . H 4 HOH B 24 2026 2026 HOH HOH . H 4 HOH B 25 2027 2027 HOH HOH . H 4 HOH B 26 2028 2028 HOH HOH . H 4 HOH B 27 2029 2029 HOH HOH . H 4 HOH B 28 2030 2030 HOH HOH . H 4 HOH B 29 2031 2031 HOH HOH . H 4 HOH B 30 2032 2032 HOH HOH . H 4 HOH B 31 2033 2033 HOH HOH . H 4 HOH B 32 2034 2034 HOH HOH . H 4 HOH B 33 2035 2035 HOH HOH . H 4 HOH B 34 2036 2036 HOH HOH . H 4 HOH B 35 2037 2037 HOH HOH . H 4 HOH B 36 2038 2038 HOH HOH . H 4 HOH B 37 2039 2039 HOH HOH . H 4 HOH B 38 2040 2040 HOH HOH . H 4 HOH B 39 2041 2041 HOH HOH . H 4 HOH B 40 2042 2042 HOH HOH . H 4 HOH B 41 2043 2043 HOH HOH . H 4 HOH B 42 2044 2044 HOH HOH . H 4 HOH B 43 2045 2045 HOH HOH . H 4 HOH B 44 2046 2046 HOH HOH . H 4 HOH B 45 2047 2047 HOH HOH . H 4 HOH B 46 2048 2048 HOH HOH . H 4 HOH B 47 2049 2049 HOH HOH . H 4 HOH B 48 2050 2050 HOH HOH . H 4 HOH B 49 2051 2051 HOH HOH . H 4 HOH B 50 2052 2052 HOH HOH . H 4 HOH B 51 2053 2053 HOH HOH . H 4 HOH B 52 2054 2054 HOH HOH . H 4 HOH B 53 2055 2055 HOH HOH . H 4 HOH B 54 2056 2056 HOH HOH . H 4 HOH B 55 2057 2057 HOH HOH . H 4 HOH B 56 2058 2058 HOH HOH . H 4 HOH B 57 2059 2059 HOH HOH . H 4 HOH B 58 2060 2060 HOH HOH . H 4 HOH B 59 2061 2061 HOH HOH . H 4 HOH B 60 2062 2062 HOH HOH . H 4 HOH B 61 2063 2063 HOH HOH . H 4 HOH B 62 2065 2065 HOH HOH . H 4 HOH B 63 2066 2066 HOH HOH . H 4 HOH B 64 2067 2067 HOH HOH . H 4 HOH B 65 2068 2068 HOH HOH . H 4 HOH B 66 2069 2069 HOH HOH . H 4 HOH B 67 2070 2070 HOH HOH . H 4 HOH B 68 2071 2071 HOH HOH . H 4 HOH B 69 2072 2072 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . D 3 0.269 15.388 128.009 1 53.48 ? PA NAD 1001 A 1 HETATM 2 O O1A NAD . . . D 3 -0.106 16.61 128.835 1 65.12 ? O1A NAD 1001 A 1 HETATM 3 O O2A NAD . . . D 3 0.62 15.283 126.48 1 48.21 ? O2A NAD 1001 A 1 HETATM 4 O O5B NAD . . . D 3 1.514 14.789 128.69 1 42.54 ? O5B NAD 1001 A 1 HETATM 5 C C5B NAD . . . D 3 1.708 13.488 128.12 1 41.39 ? C5B NAD 1001 A 1 HETATM 6 C C4B NAD . . . D 3 2.772 13.077 129.338 1 46.94 ? C4B NAD 1001 A 1 HETATM 7 O O4B NAD . . . D 3 3.36 11.801 128.832 1 51.56 ? O4B NAD 1001 A 1 HETATM 8 C C3B NAD . . . D 3 4.093 14.13 129.077 1 50.88 ? C3B NAD 1001 A 1 HETATM 9 O O3B NAD . . . D 3 4.776 14.433 130.349 1 53.23 ? O3B NAD 1001 A 1 HETATM 10 C C2B NAD . . . D 3 5.049 13.34 128.242 1 51.11 ? C2B NAD 1001 A 1 HETATM 11 O O2B NAD . . . D 3 6.472 13.55 128.588 1 57.24 ? O2B NAD 1001 A 1 HETATM 12 C C1B NAD . . . D 3 4.843 12 128.998 1 49.89 ? C1B NAD 1001 A 1 HETATM 13 N N9A NAD . . . D 3 5.567 11.237 127.86 1 52.16 ? N9A NAD 1001 A 1 HETATM 14 C C8A NAD . . . D 3 5.4 11.325 126.344 1 47.98 ? C8A NAD 1001 A 1 HETATM 15 N N7A NAD . . . D 3 6.104 10.159 125.742 1 47.86 ? N7A NAD 1001 A 1 HETATM 16 C C5A NAD . . . D 3 6.713 9.567 126.779 1 51.25 ? C5A NAD 1001 A 1 HETATM 17 C C6A NAD . . . D 3 7.614 8.528 126.805 1 53.09 ? C6A NAD 1001 A 1 HETATM 18 N N6A NAD . . . D 3 8.14 7.853 125.695 1 53.32 ? N6A NAD 1001 A 1 HETATM 19 N N1A NAD . . . D 3 8.081 7.985 127.995 1 55.06 ? N1A NAD 1001 A 1 HETATM 20 C C2A NAD . . . D 3 7.727 8.484 129.316 1 57.04 ? C2A NAD 1001 A 1 HETATM 21 N N3A NAD . . . D 3 6.88 9.658 129.198 1 55.21 ? N3A NAD 1001 A 1 HETATM 22 C C4A NAD . . . D 3 6.384 10.153 128.007 1 53.56 ? C4A NAD 1001 A 1 HETATM 23 O O3 NAD . . . D 3 -1.012 14.281 128.282 1 49.85 ? O3 NAD 1001 A 1 HETATM 24 P PN NAD . . . D 3 -2.097 14.674 129.279 1 41.47 ? PN NAD 1001 A 1 HETATM 25 O O1N NAD . . . D 3 -2.871 15.749 128.738 1 47.16 ? O1N NAD 1001 A 1 HETATM 26 O O2N NAD . . . D 3 -1.7 14.546 130.757 1 40.92 ? O2N NAD 1001 A 1 HETATM 27 O O5D NAD . . . D 3 -3.083 13.16 129.201 1 48.23 ? O5D NAD 1001 A 1 HETATM 28 C C5D NAD . . . D 3 -2.345 12.037 128.855 1 44.97 ? C5D NAD 1001 A 1 HETATM 29 C C4D NAD . . . D 3 -3.303 10.99 128.252 1 43.77 ? C4D NAD 1001 A 1 HETATM 30 O O4D NAD . . . D 3 -4.668 11.289 128.817 1 42.07 ? O4D NAD 1001 A 1 HETATM 31 C C3D NAD . . . D 3 -3.422 11.387 126.856 1 32.55 ? C3D NAD 1001 A 1 HETATM 32 O O3D NAD . . . D 3 -3.66 10.128 126.14 1 36.68 ? O3D NAD 1001 A 1 HETATM 33 C C2D NAD . . . D 3 -4.7 12.122 126.792 1 37 ? C2D NAD 1001 A 1 HETATM 34 O O2D NAD . . . D 3 -5.212 11.908 125.439 1 38.5 ? O2D NAD 1001 A 1 HETATM 35 C C1D NAD . . . D 3 -5.604 11.377 127.744 1 37.37 ? C1D NAD 1001 A 1 HETATM 36 N N1N NAD . . . D 3 -6.612 12.368 128.156 1 33.65 ? N1N NAD 1001 A 1 HETATM 37 C C2N NAD . . . D 3 -7.909 11.847 128.076 1 38.28 ? C2N NAD 1001 A 1 HETATM 38 C C3N NAD . . . D 3 -9.013 12.61 128.385 1 35.81 ? C3N NAD 1001 A 1 HETATM 39 C C7N NAD . . . D 3 -10.424 12.047 128.543 1 40.84 ? C7N NAD 1001 A 1 HETATM 40 O O7N NAD . . . D 3 -11.197 13.101 128.95 1 47.02 ? O7N NAD 1001 A 1 HETATM 41 N N7N NAD . . . D 3 -10.727 10.779 128.493 1 36.44 ? N7N NAD 1001 A 1 HETATM 42 C C4N NAD . . . D 3 -8.816 13.935 128.824 1 37.33 ? C4N NAD 1001 A 1 HETATM 43 C C5N NAD . . . D 3 -7.575 14.529 128.853 1 37.01 ? C5N NAD 1001 A 1 HETATM 44 C C6N NAD . . . D 3 -6.445 13.71 128.506 1 38.75 ? C6N NAD 1001 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #