data_3ABV # _model_server_result.job_id O6z9LgCP5SKQ1ciymkYang _model_server_result.datetime_utc '2024-11-24 11:45:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3abv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1201}' # _entry.id 3ABV # _exptl.entry_id 3ABV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 341.326 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-biphenyl-3-yl-2-(trifluoromethyl)benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3ABV _cell.length_a 71.702 _cell.length_b 84.17 _cell.length_c 294.432 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ABV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NE2 HIS 57 A HIS 57 1_555 E C8M FAD . A FAD 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc1 B SG CYS 65 B CYS 65 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc2 B SG CYS 70 B CYS 70 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc3 B SG CYS 73 B CYS 73 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc4 B SG CYS 85 B CYS 85 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc5 B SG CYS 158 B CYS 158 1_555 H FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc6 B SG CYS 161 B CYS 161 1_555 H FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc7 B SG CYS 164 B CYS 164 1_555 H FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc8 B SG CYS 168 B CYS 168 1_555 J FE4 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc9 B SG CYS 215 B CYS 215 1_555 J FE3 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc10 B SG CYS 221 B CYS 221 1_555 J FE1 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc11 B SG CYS 225 B CYS 225 1_555 H FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc12 C NE2 HIS 98 C HIS 101 1_555 K FE HEM . C HEM 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc13 K FE HEM . C HEM 1305 1_555 D NE2 HIS 46 D HIS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? # _chem_comp.formula 'C20 H14 F3 N O' _chem_comp.formula_weight 341.326 _chem_comp.id F6A _chem_comp.mon_nstd_flag . _chem_comp.name N-biphenyl-3-yl-2-(trifluoromethyl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C8 F6A sing 208 n n N C9 F6A sing 209 n n O C8 F6A doub 210 n n C1 F1 F6A sing 211 n n C1 C2 F6A sing 212 n n C1 F2 F6A sing 213 n n C1 F3 F6A sing 214 n n C2 C3 F6A doub 215 n y C2 C7 F6A sing 216 n y C3 C4 F6A sing 217 n y C3 C8 F6A sing 218 n n C4 C5 F6A doub 219 n y C5 C6 F6A sing 220 n y C6 C7 F6A doub 221 n y C9 C10 F6A doub 222 n y C9 C14 F6A sing 223 n y C10 C11 F6A sing 224 n y C11 C12 F6A doub 225 n y C11 C15 F6A sing 226 n y C12 C13 F6A sing 227 n y C13 C14 F6A doub 228 n y C15 C16 F6A doub 229 n y C15 C20 F6A sing 230 n y C16 C17 F6A sing 231 n y C17 C18 F6A doub 232 n y C18 C19 F6A sing 233 n y C19 C20 F6A doub 234 n y N HN F6A sing 235 n n C4 H4 F6A sing 236 n n C5 H5 F6A sing 237 n n C6 H6 F6A sing 238 n n C7 H7 F6A sing 239 n n C10 H10 F6A sing 240 n n C12 H12 F6A sing 241 n n C13 H13 F6A sing 242 n n C14 H14 F6A sing 243 n n C16 H16 F6A sing 244 n n C17 H17 F6A sing 245 n n C18 H18 F6A sing 246 n n C19 H19 F6A sing 247 n n C20 H20 F6A sing 248 n n # _atom_sites.entry_id 3ABV _atom_sites.fract_transf_matrix[1][1] 0.013947 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011881 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003396 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 FAD A 1 700 700 FAD FAD . F 6 MLI A 1 701 701 MLI MLI . G 7 FES B 1 302 302 FES FES . H 8 SF4 B 1 303 303 SF4 SF4 . I 9 F6A B 1 1201 1201 F6A F6A . J 10 F3S B 1 304 304 F3S F3S . K 11 HEM C 1 1305 1305 HEM HEM . L 12 EPH D 1 1306 1306 EPH EPH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N F6A . . . I 9 -21.147 -24.542 60.886 1 61.08 ? N F6A 1201 B 1 HETATM 2 O O F6A . . . I 9 -21.219 -26.786 60.936 1 60.81 ? O F6A 1201 B 1 HETATM 3 C C1 F6A . . . I 9 -23.674 -27.249 59.055 1 60.21 ? C1 F6A 1201 B 1 HETATM 4 F F1 F6A . . . I 9 -22.536 -26.787 58.572 1 60.23 ? F1 F6A 1201 B 1 HETATM 5 C C2 F6A . . . I 9 -24.191 -26.379 60.162 1 60.2 ? C2 F6A 1201 B 1 HETATM 6 F F2 F6A . . . I 9 -23.491 -28.454 59.56 1 60.25 ? F2 F6A 1201 B 1 HETATM 7 C C3 F6A . . . I 9 -23.283 -25.648 61.095 1 60.62 ? C3 F6A 1201 B 1 HETATM 8 F F3 F6A . . . I 9 -24.55 -27.288 58.067 1 60.03 ? F3 F6A 1201 B 1 HETATM 9 C C4 F6A . . . I 9 -23.848 -24.86 62.092 1 60.51 ? C4 F6A 1201 B 1 HETATM 10 C C5 F6A . . . I 9 -25.232 -24.775 62.214 1 60.45 ? C5 F6A 1201 B 1 HETATM 11 C C6 F6A . . . I 9 -26.081 -25.468 61.349 1 60.56 ? C6 F6A 1201 B 1 HETATM 12 C C7 F6A . . . I 9 -25.568 -26.264 60.33 1 60.22 ? C7 F6A 1201 B 1 HETATM 13 C C8 F6A . . . I 9 -21.788 -25.707 60.977 1 60.83 ? C8 F6A 1201 B 1 HETATM 14 C C9 F6A . . . I 9 -19.929 -24.268 61.411 1 61.34 ? C9 F6A 1201 B 1 HETATM 15 C C10 F6A . . . I 9 -19.319 -23.074 61.033 1 61.64 ? C10 F6A 1201 B 1 HETATM 16 C C11 F6A . . . I 9 -18.064 -22.73 61.53 1 62.41 ? C11 F6A 1201 B 1 HETATM 17 C C12 F6A . . . I 9 -17.423 -23.585 62.429 1 62.01 ? C12 F6A 1201 B 1 HETATM 18 C C13 F6A . . . I 9 -18.027 -24.78 62.815 1 61.47 ? C13 F6A 1201 B 1 HETATM 19 C C14 F6A . . . I 9 -19.279 -25.121 62.307 1 61.24 ? C14 F6A 1201 B 1 HETATM 20 C C15 F6A . . . I 9 -17.45 -21.436 61.109 1 63.61 ? C15 F6A 1201 B 1 HETATM 21 C C16 F6A . . . I 9 -16.812 -20.617 62.054 1 64.25 ? C16 F6A 1201 B 1 HETATM 22 C C17 F6A . . . I 9 -16.251 -19.398 61.67 1 64.46 ? C17 F6A 1201 B 1 HETATM 23 C C18 F6A . . . I 9 -16.331 -18.989 60.335 1 64.8 ? C18 F6A 1201 B 1 HETATM 24 C C19 F6A . . . I 9 -16.968 -19.797 59.388 1 64.6 ? C19 F6A 1201 B 1 HETATM 25 C C20 F6A . . . I 9 -17.528 -21.019 59.775 1 64.12 ? C20 F6A 1201 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #