data_3ABV
#
_model_server_result.job_id            06N2xJVulnMz9rNImCYCgg 
_model_server_result.datetime_utc      '2024-11-28 04:30:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3abv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":1305}' 
#
_entry.id    3ABV 
#
_exptl.entry_id    3ABV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          11 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3ABV 
_cell.length_a            71.702 
_cell.length_b            84.17 
_cell.length_c            294.432 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ABV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      11 
_struct_asym.id                             K 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NE2 HIS 57 A HIS 57 1_555 E C8M FAD . A FAD 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
metalc ? metalc1 B SG CYS 65 B CYS 65 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? 
metalc ? metalc2 B SG CYS 70 B CYS 70 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc3 B SG CYS 73 B CYS 73 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc4 B SG CYS 85 B CYS 85 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? 
metalc ? metalc5 B SG CYS 158 B CYS 158 1_555 H FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? 
metalc ? metalc6 B SG CYS 161 B CYS 161 1_555 H FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
metalc ? metalc7 B SG CYS 164 B CYS 164 1_555 H FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc8 B SG CYS 168 B CYS 168 1_555 J FE4 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc9 B SG CYS 215 B CYS 215 1_555 J FE3 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
metalc ? metalc10 B SG CYS 221 B CYS 221 1_555 J FE1 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc11 B SG CYS 225 B CYS 225 1_555 H FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? 
metalc ? metalc12 C NE2 HIS 98 C HIS 101 1_555 K FE HEM . C HEM 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc13 K FE HEM . C HEM 1305 1_555 D NE2 HIS 46 D HIS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 390 n n 
CHA C4D HEM doub 391 n n 
CHA HHA HEM sing 392 n n 
CHB C4A HEM sing 393 n n 
CHB C1B HEM doub 394 n n 
CHB HHB HEM sing 395 n n 
CHC C4B HEM sing 396 n n 
CHC C1C HEM doub 397 n n 
CHC HHC HEM sing 398 n n 
CHD C4C HEM doub 399 n n 
CHD C1D HEM sing 400 n n 
CHD HHD HEM sing 401 n n 
C1A C2A HEM doub 402 n y 
C1A NA HEM sing 403 n y 
C2A C3A HEM sing 404 n y 
C2A CAA HEM sing 405 n n 
C3A C4A HEM doub 406 n y 
C3A CMA HEM sing 407 n n 
C4A NA HEM sing 408 n y 
CMA HMA HEM sing 409 n n 
CMA HMAA HEM sing 410 n n 
CMA HMAB HEM sing 411 n n 
CAA CBA HEM sing 412 n n 
CAA HAA HEM sing 413 n n 
CAA HAAA HEM sing 414 n n 
CBA CGA HEM sing 415 n n 
CBA HBA HEM sing 416 n n 
CBA HBAA HEM sing 417 n n 
CGA O1A HEM doub 418 n n 
CGA O2A HEM sing 419 n n 
C1B C2B HEM sing 420 n n 
C1B NB HEM sing 421 n n 
C2B C3B HEM doub 422 n n 
C2B CMB HEM sing 423 n n 
C3B C4B HEM sing 424 n n 
C3B CAB HEM sing 425 n n 
C4B NB HEM doub 426 n n 
CMB HMB HEM sing 427 n n 
CMB HMBA HEM sing 428 n n 
CMB HMBB HEM sing 429 n n 
CAB CBB HEM doub 430 n n 
CAB HAB HEM sing 431 n n 
CBB HBB HEM sing 432 n n 
CBB HBBA HEM sing 433 n n 
C1C C2C HEM sing 434 n y 
C1C NC HEM sing 435 n y 
C2C C3C HEM doub 436 n y 
C2C CMC HEM sing 437 n n 
C3C C4C HEM sing 438 n y 
C3C CAC HEM sing 439 n n 
C4C NC HEM sing 440 n y 
CMC HMC HEM sing 441 n n 
CMC HMCA HEM sing 442 n n 
CMC HMCB HEM sing 443 n n 
CAC CBC HEM doub 444 n n 
CAC HAC HEM sing 445 n n 
CBC HBC HEM sing 446 n n 
CBC HBCA HEM sing 447 n n 
C1D C2D HEM sing 448 n n 
C1D ND HEM doub 449 n n 
C2D C3D HEM doub 450 n n 
C2D CMD HEM sing 451 n n 
C3D C4D HEM sing 452 n n 
C3D CAD HEM sing 453 n n 
C4D ND HEM sing 454 n n 
CMD HMD HEM sing 455 n n 
CMD HMDA HEM sing 456 n n 
CMD HMDB HEM sing 457 n n 
CAD CBD HEM sing 458 n n 
CAD HAD HEM sing 459 n n 
CAD HADA HEM sing 460 n n 
CBD CGD HEM sing 461 n n 
CBD HBD HEM sing 462 n n 
CBD HBDA HEM sing 463 n n 
CGD O1D HEM doub 464 n n 
CGD O2D HEM sing 465 n n 
O2A H2A HEM sing 466 n n 
O2D H2D HEM sing 467 n n 
FE NA HEM sing 468 n n 
FE NB HEM sing 469 n n 
FE NC HEM sing 470 n n 
FE ND HEM sing 471 n n 
#
_atom_sites.entry_id                     3ABV 
_atom_sites.fract_transf_matrix[1][1]    0.013947 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011881 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003396 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 FAD A 1 700 700 FAD FAD . 
F 6 MLI A 1 701 701 MLI MLI . 
G 7 FES B 1 302 302 FES FES . 
H 8 SF4 B 1 303 303 SF4 SF4 . 
I 9 F6A B 1 1201 1201 F6A F6A . 
J 10 F3S B 1 304 304 F3S F3S . 
K 11 HEM C 1 1305 1305 HEM HEM . 
L 12 EPH D 1 1306 1306 EPH EPH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . K 11 -33.708 -27.147 65.175 1 51.66 ? CHA HEM 1305 C 1 
HETATM 2 C CHB HEM . . . K 11 -34.255 -29.17 69.517 1 51.04 ? CHB HEM 1305 C 1 
HETATM 3 C CHC HEM . . . K 11 -37.592 -25.808 70.611 1 51.47 ? CHC HEM 1305 C 1 
HETATM 4 C CHD HEM . . . K 11 -37.743 -24.524 65.947 1 52.45 ? CHD HEM 1305 C 1 
HETATM 5 C C1A HEM . . . K 11 -33.507 -27.956 66.266 1 50.94 ? C1A HEM 1305 C 1 
HETATM 6 C C2A HEM . . . K 11 -32.472 -28.955 66.42 1 50.66 ? C2A HEM 1305 C 1 
HETATM 7 C C3A HEM . . . K 11 -32.628 -29.516 67.626 1 50.74 ? C3A HEM 1305 C 1 
HETATM 8 C C4A HEM . . . K 11 -33.76 -28.883 68.269 1 50.6 ? C4A HEM 1305 C 1 
HETATM 9 C CMA HEM . . . K 11 -31.76 -30.641 68.239 1 50.61 ? CMA HEM 1305 C 1 
HETATM 10 C CAA HEM . . . K 11 -31.392 -29.304 65.371 1 50.57 ? CAA HEM 1305 C 1 
HETATM 11 C CBA HEM . . . K 11 -30.268 -28.274 65.371 1 51.38 ? CBA HEM 1305 C 1 
HETATM 12 C CGA HEM . . . K 11 -29.806 -28.039 63.953 1 52.73 ? CGA HEM 1305 C 1 
HETATM 13 O O1A HEM . . . K 11 -29.121 -27.012 63.694 1 53.3 ? O1A HEM 1305 C 1 
HETATM 14 O O2A HEM . . . K 11 -30.114 -28.874 63.063 1 53.37 ? O2A HEM 1305 C 1 
HETATM 15 C C1B HEM . . . K 11 -35.203 -28.438 70.202 1 51.58 ? C1B HEM 1305 C 1 
HETATM 16 C C2B HEM . . . K 11 -35.655 -28.687 71.564 1 51.77 ? C2B HEM 1305 C 1 
HETATM 17 C C3B HEM . . . K 11 -36.571 -27.755 71.857 1 52.16 ? C3B HEM 1305 C 1 
HETATM 18 C C4B HEM . . . K 11 -36.741 -26.888 70.704 1 51.67 ? C4B HEM 1305 C 1 
HETATM 19 C CMB HEM . . . K 11 -35.173 -29.82 72.505 1 50.52 ? CMB HEM 1305 C 1 
HETATM 20 C CAB HEM . . . K 11 -37.325 -27.623 73.196 1 53.16 ? CAB HEM 1305 C 1 
HETATM 21 C CBB HEM . . . K 11 -38.58 -28.068 73.285 1 54.34 ? CBB HEM 1305 C 1 
HETATM 22 C C1C HEM . . . K 11 -37.985 -25.198 69.439 1 51.66 ? C1C HEM 1305 C 1 
HETATM 23 C C2C HEM . . . K 11 -39.095 -24.27 69.259 1 51.72 ? C2C HEM 1305 C 1 
HETATM 24 C C3C HEM . . . K 11 -39.13 -23.923 67.973 1 51.97 ? C3C HEM 1305 C 1 
HETATM 25 C C4C HEM . . . K 11 -38.049 -24.614 67.287 1 52.17 ? C4C HEM 1305 C 1 
HETATM 26 C CMC HEM . . . K 11 -40.081 -23.759 70.335 1 51.61 ? CMC HEM 1305 C 1 
HETATM 27 C CAC HEM . . . K 11 -40.15 -22.958 67.332 1 52.17 ? CAC HEM 1305 C 1 
HETATM 28 C CBC HEM . . . K 11 -39.745 -21.79 66.828 1 52.62 ? CBC HEM 1305 C 1 
HETATM 29 C C1D HEM . . . K 11 -36.703 -25.141 65.287 1 52.23 ? C1D HEM 1305 C 1 
HETATM 30 C C2D HEM . . . K 11 -36.49 -25.101 63.855 1 52.98 ? C2D HEM 1305 C 1 
HETATM 31 C C3D HEM . . . K 11 -35.219 -25.922 63.612 1 52.89 ? C3D HEM 1305 C 1 
HETATM 32 C C4D HEM . . . K 11 -34.813 -26.37 64.924 1 51.74 ? C4D HEM 1305 C 1 
HETATM 33 C CMD HEM . . . K 11 -37.363 -24.38 62.797 1 53.34 ? CMD HEM 1305 C 1 
HETATM 34 C CAD HEM . . . K 11 -34.532 -26.23 62.26 1 54.66 ? CAD HEM 1305 C 1 
HETATM 35 C CBD HEM . . . K 11 -33.797 -25.023 61.683 1 56.87 ? CBD HEM 1305 C 1 
HETATM 36 C CGD HEM . . . K 11 -33.058 -25.445 60.432 1 58.35 ? CGD HEM 1305 C 1 
HETATM 37 O O1D HEM . . . K 11 -31.955 -26.052 60.569 1 59.34 ? O1D HEM 1305 C 1 
HETATM 38 O O2D HEM . . . K 11 -33.569 -25.18 59.304 1 58.24 ? O2D HEM 1305 C 1 
HETATM 39 N NA HEM . . . K 11 -34.273 -27.937 67.408 1 50.89 ? NA HEM 1305 C 1 
HETATM 40 N NB HEM . . . K 11 -35.89 -27.336 69.71 1 51.38 ? NB HEM 1305 C 1 
HETATM 41 N NC HEM . . . K 11 -37.371 -25.382 68.211 1 51.57 ? NC HEM 1305 C 1 
HETATM 42 N ND HEM . . . K 11 -35.703 -25.896 65.876 1 51.2 ? ND HEM 1305 C 1 
HETATM 43 FE FE HEM . . . K 11 -35.82 -26.617 67.793 1 51 ? FE HEM 1305 C 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#