data_3ABV # _model_server_result.job_id GuIiy8hdLcHVyJkhL8Fzrg _model_server_result.datetime_utc '2024-11-24 11:45:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3abv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1306}' # _entry.id 3ABV # _exptl.entry_id 3ABV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 709.933 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3ABV _cell.length_a 71.702 _cell.length_b 84.17 _cell.length_c 294.432 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ABV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 12 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NE2 HIS 57 A HIS 57 1_555 E C8M FAD . A FAD 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc1 B SG CYS 65 B CYS 65 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc2 B SG CYS 70 B CYS 70 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc3 B SG CYS 73 B CYS 73 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc4 B SG CYS 85 B CYS 85 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc5 B SG CYS 158 B CYS 158 1_555 H FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc6 B SG CYS 161 B CYS 161 1_555 H FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc7 B SG CYS 164 B CYS 164 1_555 H FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc8 B SG CYS 168 B CYS 168 1_555 J FE4 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc9 B SG CYS 215 B CYS 215 1_555 J FE3 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc10 B SG CYS 221 B CYS 221 1_555 J FE1 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc11 B SG CYS 225 B CYS 225 1_555 H FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc12 C NE2 HIS 98 C HIS 101 1_555 K FE HEM . C HEM 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc13 K FE HEM . C HEM 1305 1_555 D NE2 HIS 46 D HIS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? # _chem_comp.formula 'C39 H68 N O8 P' _chem_comp.formula_weight 709.933 _chem_comp.id EPH _chem_comp.mon_nstd_flag . _chem_comp.name L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 EPH sing 83 n n C1 O2 EPH sing 84 n n C1 H11 EPH sing 85 n n C1 H12A EPH sing 86 n n C2 C37 EPH sing 87 n n C2 O1 EPH sing 88 n n C2 H2 EPH sing 89 n n C4 O2 EPH sing 90 n n C4 O4 EPH doub 91 n n C4 C18 EPH sing 92 n n C18 C19 EPH sing 93 n n C18 H181 EPH sing 94 n n C18 H182 EPH sing 95 n n C19 C20 EPH sing 96 n n C19 H191 EPH sing 97 n n C19 H192 EPH sing 98 n n C20 C21 EPH sing 99 n n C20 H201 EPH sing 100 n n C20 H202 EPH sing 101 n n C21 C22 EPH sing 102 n n C21 H211 EPH sing 103 n n C21 H212 EPH sing 104 n n C22 C23 EPH sing 105 n n C22 H221 EPH sing 106 n n C22 H222 EPH sing 107 n n C23 C24 EPH sing 108 n n C23 H231 EPH sing 109 n n C23 H232 EPH sing 110 n n C24 C25 EPH doub 111 e n C24 H24 EPH sing 112 n n C25 C26 EPH sing 113 n n C25 H25 EPH sing 114 n n C26 C27 EPH sing 115 n n C26 H261 EPH sing 116 n n C26 H262 EPH sing 117 n n C27 C28 EPH sing 118 n n C27 H271 EPH sing 119 n n C27 H272 EPH sing 120 n n C28 C29 EPH doub 121 e n C28 H28 EPH sing 122 n n C29 C30 EPH sing 123 n n C29 H29 EPH sing 124 n n C30 C31 EPH sing 125 n n C30 H301 EPH sing 126 n n C30 H302 EPH sing 127 n n C31 C32 EPH sing 128 n n C31 H311 EPH sing 129 n n C31 H312 EPH sing 130 n n C32 C33 EPH doub 131 e n C32 H32 EPH sing 132 n n C33 C34 EPH sing 133 n n C33 H33 EPH sing 134 n n C34 H341 EPH sing 135 n n C34 H342 EPH sing 136 n n C34 H343 EPH sing 137 n n C37 O5 EPH sing 138 n n C37 H371 EPH sing 139 n n C37 H372 EPH sing 140 n n O5 P1 EPH sing 141 n n C3 O1 EPH sing 142 n n C3 O3 EPH doub 143 n n C3 C5 EPH sing 144 n n C5 C6 EPH sing 145 n n C5 H51 EPH sing 146 n n C5 H52 EPH sing 147 n n C6 C7 EPH sing 148 n n C6 H61 EPH sing 149 n n C6 H62 EPH sing 150 n n C7 C8 EPH sing 151 n n C7 H71 EPH sing 152 n n C7 H72 EPH sing 153 n n C8 C9 EPH sing 154 n n C8 H81 EPH sing 155 n n C8 H82 EPH sing 156 n n C9 C10 EPH sing 157 n n C9 H91 EPH sing 158 n n C9 H92 EPH sing 159 n n C10 C11 EPH sing 160 n n C10 H101 EPH sing 161 n n C10 H102 EPH sing 162 n n C11 C12 EPH sing 163 n n C11 H111 EPH sing 164 n n C11 H112 EPH sing 165 n n C12 C13 EPH doub 166 e n C12 H12 EPH sing 167 n n C13 C14 EPH sing 168 n n C13 H13 EPH sing 169 n n C14 C15 EPH sing 170 n n C14 H141 EPH sing 171 n n C14 H142 EPH sing 172 n n C15 C16 EPH doub 173 e n C15 H15 EPH sing 174 n n C16 C17 EPH sing 175 n n C16 H16 EPH sing 176 n n C17 C35 EPH sing 177 n n C17 H171 EPH sing 178 n n C17 H172 EPH sing 179 n n C35 C36 EPH sing 180 n n C35 H351 EPH sing 181 n n C35 H352 EPH sing 182 n n C36 H361 EPH sing 183 n n C36 H362 EPH sing 184 n n C36 H363 EPH sing 185 n n P1 O6 EPH sing 186 n n P1 O7 EPH doub 187 n n P1 O8 EPH sing 188 n n O6 HO6 EPH sing 189 n n O8 C38 EPH sing 190 n n C38 C39 EPH sing 191 n n C38 H381 EPH sing 192 n n C38 H382 EPH sing 193 n n C39 N1 EPH sing 194 n n C39 H391 EPH sing 195 n n C39 H392 EPH sing 196 n n N1 HN11 EPH sing 197 n n N1 HN12 EPH sing 198 n n # _atom_sites.entry_id 3ABV _atom_sites.fract_transf_matrix[1][1] 0.013947 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011881 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003396 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 FAD A 1 700 700 FAD FAD . F 6 MLI A 1 701 701 MLI MLI . G 7 FES B 1 302 302 FES FES . H 8 SF4 B 1 303 303 SF4 SF4 . I 9 F6A B 1 1201 1201 F6A F6A . J 10 F3S B 1 304 304 F3S F3S . K 11 HEM C 1 1305 1305 HEM HEM . L 12 EPH D 1 1306 1306 EPH EPH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EPH . . . L 12 -44.761 -20.94 85.704 1 93.02 ? C1 EPH 1306 D 1 HETATM 2 C C2 EPH . . . L 12 -46.085 -21.68 85.498 1 94.09 ? C2 EPH 1306 D 1 HETATM 3 C C4 EPH . . . L 12 -43.187 -21.089 83.746 1 91.73 ? C4 EPH 1306 D 1 HETATM 4 O O2 EPH . . . L 12 -43.676 -21.579 85.03 1 92.15 ? O2 EPH 1306 D 1 HETATM 5 O O4 EPH . . . L 12 -43.979 -20.557 82.983 1 92.01 ? O4 EPH 1306 D 1 HETATM 6 C C18 EPH . . . L 12 -41.722 -21.246 83.377 1 91 ? C18 EPH 1306 D 1 HETATM 7 C C19 EPH . . . L 12 -41.45 -20.98 81.892 1 90.09 ? C19 EPH 1306 D 1 HETATM 8 C C20 EPH . . . L 12 -40.949 -22.213 81.14 1 89.39 ? C20 EPH 1306 D 1 HETATM 9 C C21 EPH . . . L 12 -39.498 -22.544 81.492 1 88.95 ? C21 EPH 1306 D 1 HETATM 10 C C22 EPH . . . L 12 -38.981 -23.796 80.785 1 88.13 ? C22 EPH 1306 D 1 HETATM 11 C C23 EPH . . . L 12 -39.189 -25.062 81.612 1 87.5 ? C23 EPH 1306 D 1 HETATM 12 C C24 EPH . . . L 12 -37.976 -25.403 82.472 1 86.81 ? C24 EPH 1306 D 1 HETATM 13 C C25 EPH . . . L 12 -37.446 -26.793 82.136 1 86.14 ? C25 EPH 1306 D 1 HETATM 14 C C26 EPH . . . L 12 -37.612 -27.762 83.302 1 85.29 ? C26 EPH 1306 D 1 HETATM 15 C C27 EPH . . . L 12 -37.251 -29.189 82.901 1 84.49 ? C27 EPH 1306 D 1 HETATM 16 C C28 EPH . . . L 12 -38.505 -30.01 82.62 1 83.83 ? C28 EPH 1306 D 1 HETATM 17 C C29 EPH . . . L 12 -38.297 -30.942 81.43 1 83.1 ? C29 EPH 1306 D 1 HETATM 18 C C30 EPH . . . L 12 -39.18 -30.528 80.255 1 82.42 ? C30 EPH 1306 D 1 HETATM 19 C C31 EPH . . . L 12 -39.451 -31.713 79.346 1 81.98 ? C31 EPH 1306 D 1 HETATM 20 C C37 EPH . . . L 12 -46.731 -21.845 86.868 1 96.68 ? C37 EPH 1306 D 1 HETATM 21 O O5 EPH . . . L 12 -47.657 -20.78 87.061 1 100.24 ? O5 EPH 1306 D 1 HETATM 22 C C3 EPH . . . L 12 -47.006 -23.441 84.035 1 90.75 ? C3 EPH 1306 D 1 HETATM 23 O O1 EPH . . . L 12 -45.909 -22.969 84.89 1 92.6 ? O1 EPH 1306 D 1 HETATM 24 O O3 EPH . . . L 12 -48.126 -22.968 84.156 1 90.61 ? O3 EPH 1306 D 1 HETATM 25 C C5 EPH . . . L 12 -46.774 -24.528 83.001 1 88.97 ? C5 EPH 1306 D 1 HETATM 26 C C6 EPH . . . L 12 -45.47 -24.298 82.24 1 86.88 ? C6 EPH 1306 D 1 HETATM 27 C C7 EPH . . . L 12 -45.497 -24.91 80.843 1 85.16 ? C7 EPH 1306 D 1 HETATM 28 C C8 EPH . . . L 12 -44.217 -24.576 80.081 1 83.96 ? C8 EPH 1306 D 1 HETATM 29 C C9 EPH . . . L 12 -43.813 -25.677 79.104 1 82.95 ? C9 EPH 1306 D 1 HETATM 30 C C10 EPH . . . L 12 -42.401 -26.198 79.386 1 82.1 ? C10 EPH 1306 D 1 HETATM 31 C C11 EPH . . . L 12 -41.584 -26.427 78.109 1 80.9 ? C11 EPH 1306 D 1 HETATM 32 C C12 EPH . . . L 12 -40.569 -27.562 78.266 1 79.86 ? C12 EPH 1306 D 1 HETATM 33 C C13 EPH . . . L 12 -39.23 -27.276 77.581 1 78.86 ? C13 EPH 1306 D 1 HETATM 34 C C14 EPH . . . L 12 -38.052 -27.51 78.529 1 77.83 ? C14 EPH 1306 D 1 HETATM 35 C C15 EPH . . . L 12 -36.718 -27.7 77.807 1 76.91 ? C15 EPH 1306 D 1 HETATM 36 C C16 EPH . . . L 12 -35.752 -28.554 78.63 1 76.36 ? C16 EPH 1306 D 1 HETATM 37 C C17 EPH . . . L 12 -34.542 -27.783 79.12 1 75.61 ? C17 EPH 1306 D 1 HETATM 38 P P1 EPH . . . L 12 -49.233 -21.079 87.255 1 102.27 ? P1 EPH 1306 D 1 HETATM 39 O O6 EPH . . . L 12 -49.729 -22.229 86.221 1 102.1 ? O6 EPH 1306 D 1 HETATM 40 O O7 EPH . . . L 12 -49.503 -21.489 88.774 1 102.14 ? O7 EPH 1306 D 1 HETATM 41 O O8 EPH . . . L 12 -49.957 -19.671 86.887 1 102.09 ? O8 EPH 1306 D 1 HETATM 42 C C38 EPH . . . L 12 -50.359 -19.345 85.552 1 101.27 ? C38 EPH 1306 D 1 HETATM 43 C C39 EPH . . . L 12 -51.829 -18.943 85.534 1 100.95 ? C39 EPH 1306 D 1 HETATM 44 N N1 EPH . . . L 12 -52.462 -19.522 84.366 1 100.93 ? N1 EPH 1306 D 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 379 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #