data_3ABV
#
_model_server_result.job_id            o15jyKT2EEjcfYUr_MwRuQ 
_model_server_result.datetime_utc      '2024-11-24 11:54:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3abv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":700}' 
#
_entry.id    3ABV 
#
_exptl.entry_id    3ABV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3ABV 
_cell.length_a            71.702 
_cell.length_b            84.17 
_cell.length_c            294.432 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ABV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NE2 HIS 57 A HIS 57 1_555 E C8M FAD . A FAD 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
metalc ? metalc1 B SG CYS 65 B CYS 65 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? 
metalc ? metalc2 B SG CYS 70 B CYS 70 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc3 B SG CYS 73 B CYS 73 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc4 B SG CYS 85 B CYS 85 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? 
metalc ? metalc5 B SG CYS 158 B CYS 158 1_555 H FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? 
metalc ? metalc6 B SG CYS 161 B CYS 161 1_555 H FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
metalc ? metalc7 B SG CYS 164 B CYS 164 1_555 H FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc8 B SG CYS 168 B CYS 168 1_555 J FE4 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc9 B SG CYS 215 B CYS 215 1_555 J FE3 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
metalc ? metalc10 B SG CYS 221 B CYS 221 1_555 J FE1 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc11 B SG CYS 225 B CYS 225 1_555 H FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? 
metalc ? metalc12 C NE2 HIS 98 C HIS 101 1_555 K FE HEM . C HEM 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc13 K FE HEM . C HEM 1305 1_555 D NE2 HIS 46 D HIS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 249 n n 
PA O2A FAD sing 250 n n 
PA O5B FAD sing 251 n n 
PA O3P FAD sing 252 n n 
O2A HOA2 FAD sing 253 n n 
O5B C5B FAD sing 254 n n 
C5B C4B FAD sing 255 n n 
C5B H51A FAD sing 256 n n 
C5B H52A FAD sing 257 n n 
C4B O4B FAD sing 258 n n 
C4B C3B FAD sing 259 n n 
C4B H4B FAD sing 260 n n 
O4B C1B FAD sing 261 n n 
C3B O3B FAD sing 262 n n 
C3B C2B FAD sing 263 n n 
C3B H3B FAD sing 264 n n 
O3B HO3A FAD sing 265 n n 
C2B O2B FAD sing 266 n n 
C2B C1B FAD sing 267 n n 
C2B H2B FAD sing 268 n n 
O2B HO2A FAD sing 269 n n 
C1B N9A FAD sing 270 n n 
C1B H1B FAD sing 271 n n 
N9A C8A FAD sing 272 n y 
N9A C4A FAD sing 273 n y 
C8A N7A FAD doub 274 n y 
C8A H8A FAD sing 275 n n 
N7A C5A FAD sing 276 n y 
C5A C6A FAD sing 277 n y 
C5A C4A FAD doub 278 n y 
C6A N6A FAD sing 279 n n 
C6A N1A FAD doub 280 n y 
N6A H61A FAD sing 281 n n 
N6A H62A FAD sing 282 n n 
N1A C2A FAD sing 283 n y 
C2A N3A FAD doub 284 n y 
C2A H2A FAD sing 285 n n 
N3A C4A FAD sing 286 n y 
N1 C2 FAD sing 287 n n 
N1 C10 FAD doub 288 n n 
C2 O2 FAD doub 289 n n 
C2 N3 FAD sing 290 n n 
N3 C4 FAD sing 291 n n 
N3 HN3 FAD sing 292 n n 
C4 O4 FAD doub 293 n n 
C4 C4X FAD sing 294 n n 
C4X N5 FAD doub 295 n n 
C4X C10 FAD sing 296 n n 
N5 C5X FAD sing 297 n n 
C5X C6 FAD doub 298 n y 
C5X C9A FAD sing 299 n y 
C6 C7 FAD sing 300 n y 
C6 H6 FAD sing 301 n n 
C7 C7M FAD sing 302 n n 
C7 C8 FAD doub 303 n y 
C7M HM71 FAD sing 304 n n 
C7M HM72 FAD sing 305 n n 
C7M HM73 FAD sing 306 n n 
C8 C8M FAD sing 307 n n 
C8 C9 FAD sing 308 n y 
C8M HM81 FAD sing 309 n n 
C8M HM82 FAD sing 310 n n 
C8M HM83 FAD sing 311 n n 
C9 C9A FAD doub 312 n y 
C9 H9 FAD sing 313 n n 
C9A N10 FAD sing 314 n n 
N10 C10 FAD sing 315 n n 
N10 C1' FAD sing 316 n n 
C1' C2' FAD sing 317 n n 
C1' "H1'1" FAD sing 318 n n 
C1' "H1'2" FAD sing 319 n n 
C2' O2' FAD sing 320 n n 
C2' C3' FAD sing 321 n n 
C2' H2' FAD sing 322 n n 
O2' HO2' FAD sing 323 n n 
C3' O3' FAD sing 324 n n 
C3' C4' FAD sing 325 n n 
C3' H3' FAD sing 326 n n 
O3' HO3' FAD sing 327 n n 
C4' O4' FAD sing 328 n n 
C4' C5' FAD sing 329 n n 
C4' H4' FAD sing 330 n n 
O4' HO4' FAD sing 331 n n 
C5' O5' FAD sing 332 n n 
C5' "H5'1" FAD sing 333 n n 
C5' "H5'2" FAD sing 334 n n 
O5' P FAD sing 335 n n 
P O1P FAD doub 336 n n 
P O2P FAD sing 337 n n 
P O3P FAD sing 338 n n 
O2P HOP2 FAD sing 339 n n 
#
_atom_sites.entry_id                     3ABV 
_atom_sites.fract_transf_matrix[1][1]    0.013947 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011881 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003396 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 FAD A 1 700 700 FAD FAD . 
F 6 MLI A 1 701 701 MLI MLI . 
G 7 FES B 1 302 302 FES FES . 
H 8 SF4 B 1 303 303 SF4 SF4 . 
I 9 F6A B 1 1201 1201 F6A F6A . 
J 10 F3S B 1 304 304 F3S F3S . 
K 11 HEM C 1 1305 1305 HEM HEM . 
L 12 EPH D 1 1306 1306 EPH EPH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . E 5 -12.594 -16.23 22.536 1 52.49 ? PA FAD 700 A 1 
HETATM 2 O O1A FAD . . . E 5 -13.716 -15.621 23.33 1 52.47 ? O1A FAD 700 A 1 
HETATM 3 O O2A FAD . . . E 5 -11.745 -15.143 21.929 1 53.46 ? O2A FAD 700 A 1 
HETATM 4 O O5B FAD . . . E 5 -11.747 -17.195 23.507 1 53.31 ? O5B FAD 700 A 1 
HETATM 5 C C5B FAD . . . E 5 -10.598 -17.877 23.046 1 54.21 ? C5B FAD 700 A 1 
HETATM 6 C C4B FAD . . . E 5 -10.68 -19.378 23.344 1 54.89 ? C4B FAD 700 A 1 
HETATM 7 O O4B FAD . . . E 5 -9.557 -20.051 22.804 1 55.61 ? O4B FAD 700 A 1 
HETATM 8 C C3B FAD . . . E 5 -10.681 -19.702 24.828 1 54.98 ? C3B FAD 700 A 1 
HETATM 9 O O3B FAD . . . E 5 -11.582 -20.764 25.017 1 54.93 ? O3B FAD 700 A 1 
HETATM 10 C C2B FAD . . . E 5 -9.279 -20.171 25.135 1 55.17 ? C2B FAD 700 A 1 
HETATM 11 O O2B FAD . . . E 5 -9.266 -21.157 26.136 1 54.77 ? O2B FAD 700 A 1 
HETATM 12 C C1B FAD . . . E 5 -8.831 -20.747 23.807 1 55.94 ? C1B FAD 700 A 1 
HETATM 13 N N9A FAD . . . E 5 -7.373 -20.615 23.613 1 56.95 ? N9A FAD 700 A 1 
HETATM 14 C C8A FAD . . . E 5 -6.677 -19.47 23.31 1 57.5 ? C8A FAD 700 A 1 
HETATM 15 N N7A FAD . . . E 5 -5.365 -19.779 23.211 1 58.03 ? N7A FAD 700 A 1 
HETATM 16 C C5A FAD . . . E 5 -5.209 -21.104 23.444 1 58.02 ? C5A FAD 700 A 1 
HETATM 17 C C6A FAD . . . E 5 -4.084 -21.934 23.475 1 58.27 ? C6A FAD 700 A 1 
HETATM 18 N N6A FAD . . . E 5 -2.895 -21.395 23.732 1 58.09 ? N6A FAD 700 A 1 
HETATM 19 N N1A FAD . . . E 5 -4.253 -23.281 23.749 1 58.33 ? N1A FAD 700 A 1 
HETATM 20 C C2A FAD . . . E 5 -5.511 -23.802 24 1 57.95 ? C2A FAD 700 A 1 
HETATM 21 N N3A FAD . . . E 5 -6.612 -22.966 23.971 1 57.68 ? N3A FAD 700 A 1 
HETATM 22 C C4A FAD . . . E 5 -6.468 -21.642 23.698 1 57.41 ? C4A FAD 700 A 1 
HETATM 23 N N1 FAD . . . E 5 -18.83 -9.062 19.646 1 57.99 ? N1 FAD 700 A 1 
HETATM 24 C C2 FAD . . . E 5 -20.173 -8.993 19.328 1 58.18 ? C2 FAD 700 A 1 
HETATM 25 O O2 FAD . . . E 5 -20.552 -9.427 18.239 1 58.5 ? O2 FAD 700 A 1 
HETATM 26 N N3 FAD . . . E 5 -21.069 -8.452 20.237 1 57.41 ? N3 FAD 700 A 1 
HETATM 27 C C4 FAD . . . E 5 -20.612 -7.981 21.456 1 57.16 ? C4 FAD 700 A 1 
HETATM 28 O O4 FAD . . . E 5 -21.428 -7.507 22.243 1 57.05 ? O4 FAD 700 A 1 
HETATM 29 C C4X FAD . . . E 5 -19.247 -8.046 21.777 1 57.04 ? C4X FAD 700 A 1 
HETATM 30 N N5 FAD . . . E 5 -18.75 -7.576 22.983 1 57 ? N5 FAD 700 A 1 
HETATM 31 C C5X FAD . . . E 5 -17.398 -7.655 23.282 1 56.63 ? C5X FAD 700 A 1 
HETATM 32 C C6 FAD . . . E 5 -16.905 -7.187 24.503 1 56.73 ? C6 FAD 700 A 1 
HETATM 33 C C7 FAD . . . E 5 -15.538 -7.262 24.795 1 56.67 ? C7 FAD 700 A 1 
HETATM 34 C C7M FAD . . . E 5 -15.013 -6.751 26.109 1 56.1 ? C7M FAD 700 A 1 
HETATM 35 C C8 FAD . . . E 5 -14.67 -7.816 23.853 1 56.78 ? C8 FAD 700 A 1 
HETATM 36 C C8M FAD . . . E 5 -13.201 -7.905 24.109 1 56.99 ? C8M FAD 700 A 1 
HETATM 37 C C9 FAD . . . E 5 -15.159 -8.282 22.639 1 56.6 ? C9 FAD 700 A 1 
HETATM 38 C C9A FAD . . . E 5 -16.52 -8.2 22.353 1 56.48 ? C9A FAD 700 A 1 
HETATM 39 N N10 FAD . . . E 5 -17.005 -8.656 21.145 1 56.63 ? N10 FAD 700 A 1 
HETATM 40 C C10 FAD . . . E 5 -18.357 -8.589 20.857 1 57.09 ? C10 FAD 700 A 1 
HETATM 41 C C1' FAD . . . E 5 -16.062 -9.281 20.156 1 56.72 ? C1' FAD 700 A 1 
HETATM 42 C C2' FAD . . . E 5 -16.222 -10.792 20.391 1 56.27 ? C2' FAD 700 A 1 
HETATM 43 O O2' FAD . . . E 5 -16.646 -11.022 21.725 1 56.18 ? O2' FAD 700 A 1 
HETATM 44 C C3' FAD . . . E 5 -14.977 -11.636 20.137 1 55.8 ? C3' FAD 700 A 1 
HETATM 45 O O3' FAD . . . E 5 -14.546 -11.439 18.81 1 56.23 ? O3' FAD 700 A 1 
HETATM 46 C C4' FAD . . . E 5 -15.323 -13.109 20.371 1 55.21 ? C4' FAD 700 A 1 
HETATM 47 O O4' FAD . . . E 5 -15.66 -13.303 21.731 1 55.11 ? O4' FAD 700 A 1 
HETATM 48 C C5' FAD . . . E 5 -14.202 -14.075 20.006 1 54.47 ? C5' FAD 700 A 1 
HETATM 49 O O5' FAD . . . E 5 -14.589 -15.355 20.448 1 53.89 ? O5' FAD 700 A 1 
HETATM 50 P P FAD . . . E 5 -13.813 -16.699 20.027 1 53.82 ? P FAD 700 A 1 
HETATM 51 O O1P FAD . . . E 5 -14.812 -17.751 19.601 1 53.64 ? O1P FAD 700 A 1 
HETATM 52 O O2P FAD . . . E 5 -12.795 -16.456 18.933 1 53.65 ? O2P FAD 700 A 1 
HETATM 53 O O3P FAD . . . E 5 -13.138 -17.221 21.395 1 53.08 ? O3P FAD 700 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           53 
#