data_3ABW
#
_model_server_result.job_id            dnmXMXppz4ANwHELb_6STg 
_model_server_result.datetime_utc      '2024-11-22 05:05:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3abw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":292}' 
#
_entry.id    3ABW 
#
_exptl.entry_id    3ABW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.436 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINAL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          127.85 
_cell.angle_gamma         90 
_cell.entry_id            3ABW 
_cell.length_a            152.09 
_cell.length_b            98.79 
_cell.length_c            100.14 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ABW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 J N N 
? 2 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 256 A LYS 256 1_555 D C15 RET . A RET 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? 
covale ? covale2 B NZ LYS 256 B LYS 256 1_555 J C15 RET . B RET 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? 
covale ? covale3 C NZ LYS 256 D LYS 256 1_555 P C15 RET . D RET 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? 
#
_chem_comp.formula           'C20 H28 O' 
_chem_comp.formula_weight    284.436 
_chem_comp.id                RET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RET sing 560 n n 
C1 C6 RET sing 561 n n 
C1 C16 RET sing 562 n n 
C1 C17 RET sing 563 n n 
C2 C3 RET sing 564 n n 
C2 H21 RET sing 565 n n 
C2 H22 RET sing 566 n n 
C3 C4 RET sing 567 n n 
C3 H31 RET sing 568 n n 
C3 H32 RET sing 569 n n 
C4 C5 RET sing 570 n n 
C4 H41 RET sing 571 n n 
C4 H42 RET sing 572 n n 
C5 C6 RET doub 573 n n 
C5 C18 RET sing 574 n n 
C6 C7 RET sing 575 n n 
C7 C8 RET doub 576 e n 
C7 H7 RET sing 577 n n 
C8 C9 RET sing 578 n n 
C8 H8 RET sing 579 n n 
C9 C10 RET doub 580 e n 
C9 C19 RET sing 581 n n 
C10 C11 RET sing 582 n n 
C10 H10 RET sing 583 n n 
C11 C12 RET doub 584 e n 
C11 H11 RET sing 585 n n 
C12 C13 RET sing 586 n n 
C12 H12 RET sing 587 n n 
C13 C14 RET doub 588 e n 
C13 C20 RET sing 589 n n 
C14 C15 RET sing 590 n n 
C14 H14 RET sing 591 n n 
C15 O1 RET doub 592 n n 
C15 H15 RET sing 593 n n 
C16 H161 RET sing 594 n n 
C16 H162 RET sing 595 n n 
C16 H163 RET sing 596 n n 
C17 H171 RET sing 597 n n 
C17 H172 RET sing 598 n n 
C17 H173 RET sing 599 n n 
C18 H181 RET sing 600 n n 
C18 H182 RET sing 601 n n 
C18 H183 RET sing 602 n n 
C19 H191 RET sing 603 n n 
C19 H192 RET sing 604 n n 
C19 H193 RET sing 605 n n 
C20 H201 RET sing 606 n n 
C20 H202 RET sing 607 n n 
C20 H203 RET sing 608 n n 
#
_atom_sites.entry_id                     3ABW 
_atom_sites.fract_transf_matrix[1][1]    0.006575 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005109 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010122 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012647 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 RET A 1 292 290 RET RET . 
E 3 22B A 1 300 300 22B 22B . 
F 4 L3P A 1 310 310 L3P L3P . 
G 4 L3P A 1 313 313 L3P L3P . 
H 4 L3P A 1 317 317 L3P L3P . 
I 5 AZI A 1 401 401 AZI AZI . 
J 2 RET B 1 292 290 RET RET . 
K 4 L3P B 1 311 311 L3P L3P . 
L 4 L3P B 1 315 315 L3P L3P . 
M 4 L3P B 1 318 318 L3P L3P . 
N 3 22B B 1 300 300 22B 22B . 
O 5 AZI B 1 401 401 AZI AZI . 
P 2 RET D 1 292 290 RET RET . 
Q 4 L3P D 1 312 312 L3P L3P . 
R 4 L3P D 1 314 314 L3P L3P . 
S 4 L3P D 1 316 316 L3P L3P . 
T 5 AZI D 1 401 401 AZI AZI . 
U 6 HOH A 1 501 501 HOH HOH . 
U 6 HOH A 2 502 502 HOH HOH . 
U 6 HOH A 3 503 503 HOH HOH . 
U 6 HOH A 4 504 504 HOH HOH . 
U 6 HOH A 5 505 505 HOH HOH . 
U 6 HOH A 6 506 506 HOH HOH . 
U 6 HOH A 7 507 507 HOH HOH . 
U 6 HOH A 8 508 508 HOH HOH . 
U 6 HOH A 9 509 509 HOH HOH . 
U 6 HOH A 10 510 510 HOH HOH . 
U 6 HOH A 11 511 511 HOH HOH . 
U 6 HOH A 12 512 512 HOH HOH . 
U 6 HOH A 13 513 513 HOH HOH . 
U 6 HOH A 14 514 514 HOH HOH . 
U 6 HOH A 15 515 515 HOH HOH . 
U 6 HOH A 16 516 516 HOH HOH . 
U 6 HOH A 17 517 517 HOH HOH . 
U 6 HOH A 18 518 518 HOH HOH . 
U 6 HOH A 19 519 519 HOH HOH . 
U 6 HOH A 20 520 520 HOH HOH . 
U 6 HOH A 21 521 521 HOH HOH . 
U 6 HOH A 22 522 546 HOH HOH . 
U 6 HOH A 23 524 524 HOH HOH . 
U 6 HOH A 24 525 525 HOH HOH . 
U 6 HOH A 25 526 526 HOH HOH . 
U 6 HOH A 26 527 527 HOH HOH . 
U 6 HOH A 27 528 528 HOH HOH . 
U 6 HOH A 28 529 529 HOH HOH . 
U 6 HOH A 29 531 531 HOH HOH . 
U 6 HOH A 30 532 532 HOH HOH . 
U 6 HOH A 31 533 533 HOH HOH . 
U 6 HOH A 32 535 535 HOH HOH . 
U 6 HOH A 33 536 536 HOH HOH . 
U 6 HOH A 34 537 537 HOH HOH . 
U 6 HOH A 35 538 538 HOH HOH . 
U 6 HOH A 36 539 539 HOH HOH . 
U 6 HOH A 37 540 540 HOH HOH . 
U 6 HOH A 38 541 541 HOH HOH . 
U 6 HOH A 39 542 542 HOH HOH . 
U 6 HOH A 40 543 543 HOH HOH . 
U 6 HOH A 41 544 544 HOH HOH . 
U 6 HOH A 42 545 545 HOH HOH . 
U 6 HOH A 43 546 546 HOH HOH . 
U 6 HOH A 44 547 547 HOH HOH . 
U 6 HOH A 45 548 548 HOH HOH . 
U 6 HOH A 46 549 549 HOH HOH . 
U 6 HOH A 47 552 552 HOH HOH . 
U 6 HOH A 48 565 565 HOH HOH . 
U 6 HOH A 49 600 600 HOH HOH . 
V 6 HOH B 1 501 501 HOH HOH . 
V 6 HOH B 2 503 503 HOH HOH . 
V 6 HOH B 3 504 504 HOH HOH . 
V 6 HOH B 4 505 505 HOH HOH . 
V 6 HOH B 5 506 506 HOH HOH . 
V 6 HOH B 6 507 507 HOH HOH . 
V 6 HOH B 7 508 508 HOH HOH . 
V 6 HOH B 8 509 509 HOH HOH . 
V 6 HOH B 9 510 510 HOH HOH . 
V 6 HOH B 10 511 511 HOH HOH . 
V 6 HOH B 11 512 512 HOH HOH . 
V 6 HOH B 12 513 513 HOH HOH . 
V 6 HOH B 13 515 515 HOH HOH . 
V 6 HOH B 14 516 516 HOH HOH . 
V 6 HOH B 15 517 517 HOH HOH . 
V 6 HOH B 16 518 518 HOH HOH . 
V 6 HOH B 17 519 519 HOH HOH . 
V 6 HOH B 18 520 520 HOH HOH . 
V 6 HOH B 19 521 521 HOH HOH . 
V 6 HOH B 20 522 522 HOH HOH . 
V 6 HOH B 21 523 523 HOH HOH . 
V 6 HOH B 22 524 524 HOH HOH . 
V 6 HOH B 23 526 526 HOH HOH . 
V 6 HOH B 24 528 528 HOH HOH . 
V 6 HOH B 25 530 530 HOH HOH . 
V 6 HOH B 26 531 531 HOH HOH . 
V 6 HOH B 27 532 532 HOH HOH . 
V 6 HOH B 28 535 535 HOH HOH . 
V 6 HOH B 29 537 537 HOH HOH . 
V 6 HOH B 30 538 538 HOH HOH . 
V 6 HOH B 31 539 539 HOH HOH . 
V 6 HOH B 32 540 540 HOH HOH . 
V 6 HOH B 33 541 541 HOH HOH . 
V 6 HOH B 34 542 542 HOH HOH . 
V 6 HOH B 35 543 543 HOH HOH . 
V 6 HOH B 36 545 545 HOH HOH . 
V 6 HOH B 37 547 547 HOH HOH . 
V 6 HOH B 38 549 549 HOH HOH . 
V 6 HOH B 39 550 550 HOH HOH . 
V 6 HOH B 40 552 552 HOH HOH . 
V 6 HOH B 41 553 553 HOH HOH . 
V 6 HOH B 42 556 556 HOH HOH . 
V 6 HOH B 43 557 557 HOH HOH . 
V 6 HOH B 44 559 559 HOH HOH . 
V 6 HOH B 45 560 560 HOH HOH . 
V 6 HOH B 46 561 561 HOH HOH . 
V 6 HOH B 47 563 563 HOH HOH . 
V 6 HOH B 48 564 564 HOH HOH . 
W 6 HOH D 1 501 501 HOH HOH . 
W 6 HOH D 2 503 503 HOH HOH . 
W 6 HOH D 3 504 504 HOH HOH . 
W 6 HOH D 4 505 505 HOH HOH . 
W 6 HOH D 5 506 506 HOH HOH . 
W 6 HOH D 6 507 507 HOH HOH . 
W 6 HOH D 7 508 508 HOH HOH . 
W 6 HOH D 8 509 509 HOH HOH . 
W 6 HOH D 9 510 510 HOH HOH . 
W 6 HOH D 10 511 511 HOH HOH . 
W 6 HOH D 11 512 512 HOH HOH . 
W 6 HOH D 12 515 515 HOH HOH . 
W 6 HOH D 13 516 516 HOH HOH . 
W 6 HOH D 14 517 517 HOH HOH . 
W 6 HOH D 15 518 518 HOH HOH . 
W 6 HOH D 16 520 520 HOH HOH . 
W 6 HOH D 17 521 521 HOH HOH . 
W 6 HOH D 18 523 523 HOH HOH . 
W 6 HOH D 19 525 525 HOH HOH . 
W 6 HOH D 20 530 530 HOH HOH . 
W 6 HOH D 21 531 531 HOH HOH . 
W 6 HOH D 22 539 539 HOH HOH . 
W 6 HOH D 23 540 540 HOH HOH . 
W 6 HOH D 24 543 543 HOH HOH . 
W 6 HOH D 25 544 544 HOH HOH . 
W 6 HOH D 26 545 545 HOH HOH . 
W 6 HOH D 27 546 546 HOH HOH . 
W 6 HOH D 28 547 547 HOH HOH . 
W 6 HOH D 29 548 548 HOH HOH . 
W 6 HOH D 30 553 553 HOH HOH . 
W 6 HOH D 31 554 554 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RET . . . J 2 16.195 -3.367 1.76 1 26.31 ? C1 RET 292 B 1 
HETATM 2 C C2 RET . . . J 2 14.98 -4.375 1.837 1 23.22 ? C2 RET 292 B 1 
HETATM 3 C C3 RET . . . J 2 13.615 -3.871 1.93 1 26.81 ? C3 RET 292 B 1 
HETATM 4 C C4 RET . . . J 2 13.305 -2.596 1.16 1 24.82 ? C4 RET 292 B 1 
HETATM 5 C C5 RET . . . J 2 14.442 -1.572 1.047 1 24.31 ? C5 RET 292 B 1 
HETATM 6 C C6 RET . . . J 2 15.795 -1.87 1.3 1 23.32 ? C6 RET 292 B 1 
HETATM 7 C C7 RET . . . J 2 16.801 -0.704 1.117 1 23.43 ? C7 RET 292 B 1 
HETATM 8 C C8 RET . . . J 2 18.132 -0.686 1.311 1 21.8 ? C8 RET 292 B 1 
HETATM 9 C C9 RET . . . J 2 19.079 0.396 1.042 1 25.33 ? C9 RET 292 B 1 
HETATM 10 C C10 RET . . . J 2 20.38 0.114 1.331 1 23.32 ? C10 RET 292 B 1 
HETATM 11 C C11 RET . . . J 2 21.545 0.962 1.134 1 24.77 ? C11 RET 292 B 1 
HETATM 12 C C12 RET . . . J 2 22.751 0.503 1.443 1 22.91 ? C12 RET 292 B 1 
HETATM 13 C C13 RET . . . J 2 24.037 1.21 1.317 1 24.15 ? C13 RET 292 B 1 
HETATM 14 C C14 RET . . . J 2 25.095 0.497 1.783 1 23.07 ? C14 RET 292 B 1 
HETATM 15 C C15 RET . . . J 2 26.475 0.88 2.005 1 23.63 ? C15 RET 292 B 1 
HETATM 16 C C16 RET . . . J 2 16.781 -3.407 3.186 1 24.07 ? C16 RET 292 B 1 
HETATM 17 C C17 RET . . . J 2 17.198 -4.076 0.828 1 23.84 ? C17 RET 292 B 1 
HETATM 18 C C18 RET . . . J 2 13.914 -0.193 0.616 1 24.24 ? C18 RET 292 B 1 
HETATM 19 C C19 RET . . . J 2 18.634 1.71 0.429 1 22.72 ? C19 RET 292 B 1 
HETATM 20 C C20 RET . . . J 2 24.143 2.644 0.798 1 21.97 ? C20 RET 292 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#