data_3ABW # _model_server_result.job_id YOdT5RdzIEnxB1fC2udiVw _model_server_result.datetime_utc '2024-11-02 19:29:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3abw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":401}' # _entry.id 3ABW # _exptl.entry_id 3ABW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 42.02 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'AZIDE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 127.85 _cell.angle_gamma 90 _cell.entry_id 3ABW _cell.length_a 152.09 _cell.length_b 98.79 _cell.length_c 100.14 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ABW _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 O N N ? 5 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 256 A LYS 256 1_555 D C15 RET . A RET 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale2 B NZ LYS 256 B LYS 256 1_555 J C15 RET . B RET 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale3 C NZ LYS 256 D LYS 256 1_555 P C15 RET . D RET 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? # _chem_comp.formula 'N3 -1' _chem_comp.formula_weight 42.02 _chem_comp.id AZI _chem_comp.mon_nstd_flag . _chem_comp.name 'AZIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 N2 AZI doub 199 n n N2 N3 AZI doub 200 n n # _atom_sites.entry_id 3ABW _atom_sites.fract_transf_matrix[1][1] 0.006575 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005109 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010122 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012647 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 RET A 1 292 290 RET RET . E 3 22B A 1 300 300 22B 22B . F 4 L3P A 1 310 310 L3P L3P . G 4 L3P A 1 313 313 L3P L3P . H 4 L3P A 1 317 317 L3P L3P . I 5 AZI A 1 401 401 AZI AZI . J 2 RET B 1 292 290 RET RET . K 4 L3P B 1 311 311 L3P L3P . L 4 L3P B 1 315 315 L3P L3P . M 4 L3P B 1 318 318 L3P L3P . N 3 22B B 1 300 300 22B 22B . O 5 AZI B 1 401 401 AZI AZI . P 2 RET D 1 292 290 RET RET . Q 4 L3P D 1 312 312 L3P L3P . R 4 L3P D 1 314 314 L3P L3P . S 4 L3P D 1 316 316 L3P L3P . T 5 AZI D 1 401 401 AZI AZI . U 6 HOH A 1 501 501 HOH HOH . U 6 HOH A 2 502 502 HOH HOH . U 6 HOH A 3 503 503 HOH HOH . U 6 HOH A 4 504 504 HOH HOH . U 6 HOH A 5 505 505 HOH HOH . U 6 HOH A 6 506 506 HOH HOH . U 6 HOH A 7 507 507 HOH HOH . U 6 HOH A 8 508 508 HOH HOH . U 6 HOH A 9 509 509 HOH HOH . U 6 HOH A 10 510 510 HOH HOH . U 6 HOH A 11 511 511 HOH HOH . U 6 HOH A 12 512 512 HOH HOH . U 6 HOH A 13 513 513 HOH HOH . U 6 HOH A 14 514 514 HOH HOH . U 6 HOH A 15 515 515 HOH HOH . U 6 HOH A 16 516 516 HOH HOH . U 6 HOH A 17 517 517 HOH HOH . U 6 HOH A 18 518 518 HOH HOH . U 6 HOH A 19 519 519 HOH HOH . U 6 HOH A 20 520 520 HOH HOH . U 6 HOH A 21 521 521 HOH HOH . U 6 HOH A 22 522 546 HOH HOH . U 6 HOH A 23 524 524 HOH HOH . U 6 HOH A 24 525 525 HOH HOH . U 6 HOH A 25 526 526 HOH HOH . U 6 HOH A 26 527 527 HOH HOH . U 6 HOH A 27 528 528 HOH HOH . U 6 HOH A 28 529 529 HOH HOH . U 6 HOH A 29 531 531 HOH HOH . U 6 HOH A 30 532 532 HOH HOH . U 6 HOH A 31 533 533 HOH HOH . U 6 HOH A 32 535 535 HOH HOH . U 6 HOH A 33 536 536 HOH HOH . U 6 HOH A 34 537 537 HOH HOH . U 6 HOH A 35 538 538 HOH HOH . U 6 HOH A 36 539 539 HOH HOH . U 6 HOH A 37 540 540 HOH HOH . U 6 HOH A 38 541 541 HOH HOH . U 6 HOH A 39 542 542 HOH HOH . U 6 HOH A 40 543 543 HOH HOH . U 6 HOH A 41 544 544 HOH HOH . U 6 HOH A 42 545 545 HOH HOH . U 6 HOH A 43 546 546 HOH HOH . U 6 HOH A 44 547 547 HOH HOH . U 6 HOH A 45 548 548 HOH HOH . U 6 HOH A 46 549 549 HOH HOH . U 6 HOH A 47 552 552 HOH HOH . U 6 HOH A 48 565 565 HOH HOH . U 6 HOH A 49 600 600 HOH HOH . V 6 HOH B 1 501 501 HOH HOH . V 6 HOH B 2 503 503 HOH HOH . V 6 HOH B 3 504 504 HOH HOH . V 6 HOH B 4 505 505 HOH HOH . V 6 HOH B 5 506 506 HOH HOH . V 6 HOH B 6 507 507 HOH HOH . V 6 HOH B 7 508 508 HOH HOH . V 6 HOH B 8 509 509 HOH HOH . V 6 HOH B 9 510 510 HOH HOH . V 6 HOH B 10 511 511 HOH HOH . V 6 HOH B 11 512 512 HOH HOH . V 6 HOH B 12 513 513 HOH HOH . V 6 HOH B 13 515 515 HOH HOH . V 6 HOH B 14 516 516 HOH HOH . V 6 HOH B 15 517 517 HOH HOH . V 6 HOH B 16 518 518 HOH HOH . V 6 HOH B 17 519 519 HOH HOH . V 6 HOH B 18 520 520 HOH HOH . V 6 HOH B 19 521 521 HOH HOH . V 6 HOH B 20 522 522 HOH HOH . V 6 HOH B 21 523 523 HOH HOH . V 6 HOH B 22 524 524 HOH HOH . V 6 HOH B 23 526 526 HOH HOH . V 6 HOH B 24 528 528 HOH HOH . V 6 HOH B 25 530 530 HOH HOH . V 6 HOH B 26 531 531 HOH HOH . V 6 HOH B 27 532 532 HOH HOH . V 6 HOH B 28 535 535 HOH HOH . V 6 HOH B 29 537 537 HOH HOH . V 6 HOH B 30 538 538 HOH HOH . V 6 HOH B 31 539 539 HOH HOH . V 6 HOH B 32 540 540 HOH HOH . V 6 HOH B 33 541 541 HOH HOH . V 6 HOH B 34 542 542 HOH HOH . V 6 HOH B 35 543 543 HOH HOH . V 6 HOH B 36 545 545 HOH HOH . V 6 HOH B 37 547 547 HOH HOH . V 6 HOH B 38 549 549 HOH HOH . V 6 HOH B 39 550 550 HOH HOH . V 6 HOH B 40 552 552 HOH HOH . V 6 HOH B 41 553 553 HOH HOH . V 6 HOH B 42 556 556 HOH HOH . V 6 HOH B 43 557 557 HOH HOH . V 6 HOH B 44 559 559 HOH HOH . V 6 HOH B 45 560 560 HOH HOH . V 6 HOH B 46 561 561 HOH HOH . V 6 HOH B 47 563 563 HOH HOH . V 6 HOH B 48 564 564 HOH HOH . W 6 HOH D 1 501 501 HOH HOH . W 6 HOH D 2 503 503 HOH HOH . W 6 HOH D 3 504 504 HOH HOH . W 6 HOH D 4 505 505 HOH HOH . W 6 HOH D 5 506 506 HOH HOH . W 6 HOH D 6 507 507 HOH HOH . W 6 HOH D 7 508 508 HOH HOH . W 6 HOH D 8 509 509 HOH HOH . W 6 HOH D 9 510 510 HOH HOH . W 6 HOH D 10 511 511 HOH HOH . W 6 HOH D 11 512 512 HOH HOH . W 6 HOH D 12 515 515 HOH HOH . W 6 HOH D 13 516 516 HOH HOH . W 6 HOH D 14 517 517 HOH HOH . W 6 HOH D 15 518 518 HOH HOH . W 6 HOH D 16 520 520 HOH HOH . W 6 HOH D 17 521 521 HOH HOH . W 6 HOH D 18 523 523 HOH HOH . W 6 HOH D 19 525 525 HOH HOH . W 6 HOH D 20 530 530 HOH HOH . W 6 HOH D 21 531 531 HOH HOH . W 6 HOH D 22 539 539 HOH HOH . W 6 HOH D 23 540 540 HOH HOH . W 6 HOH D 24 543 543 HOH HOH . W 6 HOH D 25 544 544 HOH HOH . W 6 HOH D 26 545 545 HOH HOH . W 6 HOH D 27 546 546 HOH HOH . W 6 HOH D 28 547 547 HOH HOH . W 6 HOH D 29 548 548 HOH HOH . W 6 HOH D 30 553 553 HOH HOH . W 6 HOH D 31 554 554 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 AZI . . . O 5 27.907 -1.528 5.673 1 27.54 ? N1 AZI 401 B 1 HETATM 2 N N2 AZI . . . O 5 28.541 -1.971 4.863 1 32.24 ? N2 AZI 401 B 1 HETATM 3 N N3 AZI . . . O 5 29.181 -2.42 4.041 1 33.49 ? N3 AZI 401 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 3 #