data_3ACC # _model_server_result.job_id ckq_aYA1kbZZ0eyXUL45mA _model_server_result.datetime_utc '2024-10-14 08:27:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3acc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":817}' # _entry.id 3ACC # _exptl.entry_id 3ACC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3ACC _cell.length_a 67.139 _cell.length_b 67.139 _cell.length_c 152.543 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ACC _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 33.5695 58.14408 25.423833 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 5GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 5GP doub 1 n n P O2P 5GP sing 2 n n P O3P 5GP sing 3 n n P O5' 5GP sing 4 n n O2P HOP2 5GP sing 5 n n O3P HOP3 5GP sing 6 n n O5' C5' 5GP sing 7 n n C5' C4' 5GP sing 8 n n C5' "H5'1" 5GP sing 9 n n C5' "H5'2" 5GP sing 10 n n C4' O4' 5GP sing 11 n n C4' C3' 5GP sing 12 n n C4' H4' 5GP sing 13 n n O4' C1' 5GP sing 14 n n C3' O3' 5GP sing 15 n n C3' C2' 5GP sing 16 n n C3' H3' 5GP sing 17 n n O3' HO3' 5GP sing 18 n n C2' O2' 5GP sing 19 n n C2' C1' 5GP sing 20 n n C2' H2' 5GP sing 21 n n O2' HO2' 5GP sing 22 n n C1' N9 5GP sing 23 n n C1' H1' 5GP sing 24 n n N9 C8 5GP sing 25 n y N9 C4 5GP sing 26 n y C8 N7 5GP doub 27 n y C8 H8 5GP sing 28 n n N7 C5 5GP sing 29 n y C5 C6 5GP sing 30 n n C5 C4 5GP doub 31 n y C6 O6 5GP doub 32 n n C6 N1 5GP sing 33 n n N1 C2 5GP sing 34 n n N1 HN1 5GP sing 35 n n C2 N2 5GP sing 36 n n C2 N3 5GP doub 37 n n N2 HN21 5GP sing 38 n n N2 HN22 5GP sing 39 n n N3 C4 5GP sing 40 n n # _atom_sites.entry_id 3ACC _atom_sites.fract_transf_matrix[1][1] 0.014894 _atom_sites.fract_transf_matrix[1][2] 0.008599 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017199 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006556 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5GP A 1 817 817 5GP 5GP . C 3 DIO A 1 991 991 DIO DIO . D 3 DIO A 1 992 992 DIO DIO . E 4 HOH A 1 993 993 HOH HOH . E 4 HOH A 2 994 994 HOH HOH . E 4 HOH A 3 995 995 HOH HOH . E 4 HOH A 4 996 996 HOH HOH . E 4 HOH A 5 997 997 HOH HOH . E 4 HOH A 6 998 998 HOH HOH . E 4 HOH A 7 999 999 HOH HOH . E 4 HOH A 8 1000 1000 HOH HOH . E 4 HOH A 9 1001 1001 HOH HOH . E 4 HOH A 10 1002 1002 HOH HOH . E 4 HOH A 11 1003 1003 HOH HOH . E 4 HOH A 12 1004 1004 HOH HOH . E 4 HOH A 13 1005 1005 HOH HOH . E 4 HOH A 14 1006 1006 HOH HOH . E 4 HOH A 15 1007 1007 HOH HOH . E 4 HOH A 16 1008 1008 HOH HOH . E 4 HOH A 17 1009 1009 HOH HOH . E 4 HOH A 18 1010 1010 HOH HOH . E 4 HOH A 19 1011 1011 HOH HOH . E 4 HOH A 20 1012 1012 HOH HOH . E 4 HOH A 21 1013 1013 HOH HOH . E 4 HOH A 22 1014 1014 HOH HOH . E 4 HOH A 23 1015 1015 HOH HOH . E 4 HOH A 24 1016 1016 HOH HOH . E 4 HOH A 25 1017 1017 HOH HOH . E 4 HOH A 26 1018 1018 HOH HOH . E 4 HOH A 27 1019 1019 HOH HOH . E 4 HOH A 28 1020 1020 HOH HOH . E 4 HOH A 29 1021 1021 HOH HOH . E 4 HOH A 30 1022 1022 HOH HOH . E 4 HOH A 31 1023 1023 HOH HOH . E 4 HOH A 32 1024 1024 HOH HOH . E 4 HOH A 33 1025 1025 HOH HOH . E 4 HOH A 34 1026 1026 HOH HOH . E 4 HOH A 35 1027 1027 HOH HOH . E 4 HOH A 36 1028 1028 HOH HOH . E 4 HOH A 37 1029 1029 HOH HOH . E 4 HOH A 38 1030 1030 HOH HOH . E 4 HOH A 39 1031 1031 HOH HOH . E 4 HOH A 40 1032 1032 HOH HOH . E 4 HOH A 41 1033 1033 HOH HOH . E 4 HOH A 42 1034 1034 HOH HOH . E 4 HOH A 43 1035 1035 HOH HOH . E 4 HOH A 44 1036 1036 HOH HOH . E 4 HOH A 45 1037 1037 HOH HOH . E 4 HOH A 46 1038 1038 HOH HOH . E 4 HOH A 47 1039 1039 HOH HOH . E 4 HOH A 48 1040 1040 HOH HOH . E 4 HOH A 49 1041 1041 HOH HOH . E 4 HOH A 50 1042 1042 HOH HOH . E 4 HOH A 51 1043 1043 HOH HOH . E 4 HOH A 52 1044 1044 HOH HOH . E 4 HOH A 53 1045 1045 HOH HOH . E 4 HOH A 54 1046 1046 HOH HOH . E 4 HOH A 55 1047 1047 HOH HOH . E 4 HOH A 56 1048 1048 HOH HOH . E 4 HOH A 57 1049 1049 HOH HOH . E 4 HOH A 58 1050 1050 HOH HOH . E 4 HOH A 59 1051 1051 HOH HOH . E 4 HOH A 60 1052 1052 HOH HOH . E 4 HOH A 61 1053 1053 HOH HOH . E 4 HOH A 62 1054 1054 HOH HOH . E 4 HOH A 63 1055 1055 HOH HOH . E 4 HOH A 64 1056 1056 HOH HOH . E 4 HOH A 65 1057 1057 HOH HOH . E 4 HOH A 66 1058 1058 HOH HOH . E 4 HOH A 67 1059 1059 HOH HOH . E 4 HOH A 68 1060 1060 HOH HOH . E 4 HOH A 69 1061 1061 HOH HOH . E 4 HOH A 70 1062 1062 HOH HOH . E 4 HOH A 71 1063 1063 HOH HOH . E 4 HOH A 72 1064 1064 HOH HOH . E 4 HOH A 73 1065 1065 HOH HOH . E 4 HOH A 74 1066 1066 HOH HOH . E 4 HOH A 75 1067 1067 HOH HOH . E 4 HOH A 76 1068 1068 HOH HOH . E 4 HOH A 77 1069 1069 HOH HOH . E 4 HOH A 78 1070 1070 HOH HOH . E 4 HOH A 79 1071 1071 HOH HOH . E 4 HOH A 80 1072 1072 HOH HOH . E 4 HOH A 81 1073 1073 HOH HOH . E 4 HOH A 82 1074 1074 HOH HOH . E 4 HOH A 83 1075 1075 HOH HOH . E 4 HOH A 84 1076 1076 HOH HOH . E 4 HOH A 85 1077 1077 HOH HOH . E 4 HOH A 86 1078 1078 HOH HOH . E 4 HOH A 87 1079 1079 HOH HOH . E 4 HOH A 88 1080 1080 HOH HOH . E 4 HOH A 89 1081 1081 HOH HOH . E 4 HOH A 90 1082 1082 HOH HOH . E 4 HOH A 91 1083 1083 HOH HOH . E 4 HOH A 92 1084 1084 HOH HOH . E 4 HOH A 93 1085 1085 HOH HOH . E 4 HOH A 94 1086 1086 HOH HOH . E 4 HOH A 95 1087 1087 HOH HOH . E 4 HOH A 96 1088 1088 HOH HOH . E 4 HOH A 97 1089 1089 HOH HOH . E 4 HOH A 98 1090 1090 HOH HOH . E 4 HOH A 99 1091 1091 HOH HOH . E 4 HOH A 100 1092 1092 HOH HOH . E 4 HOH A 101 1093 1093 HOH HOH . E 4 HOH A 102 1094 1094 HOH HOH . E 4 HOH A 103 1095 1095 HOH HOH . E 4 HOH A 104 1096 1096 HOH HOH . E 4 HOH A 105 1097 1097 HOH HOH . E 4 HOH A 106 1098 1098 HOH HOH . E 4 HOH A 107 1099 1099 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 5GP . . . B 2 16.963 20.909 -4.685 1 21.63 ? P 5GP 817 A 1 HETATM 2 O O1P 5GP . . . B 2 17.268 20.962 -6.128 1 20.89 ? O1P 5GP 817 A 1 HETATM 3 O O2P 5GP . . . B 2 17.984 19.905 -3.97 1 24.43 ? O2P 5GP 817 A 1 HETATM 4 O O3P 5GP . . . B 2 15.459 20.383 -4.463 1 18.86 ? O3P 5GP 817 A 1 HETATM 5 O O5' 5GP . . . B 2 17.092 22.413 -4.089 1 22.83 ? O5' 5GP 817 A 1 HETATM 6 C C5' 5GP . . . B 2 17.449 22.333 -2.713 1 25.22 ? C5' 5GP 817 A 1 HETATM 7 C C4' 5GP . . . B 2 17.756 23.734 -2.176 1 24.04 ? C4' 5GP 817 A 1 HETATM 8 O O4' 5GP . . . B 2 18.046 24.657 -3.274 1 23.1 ? O4' 5GP 817 A 1 HETATM 9 C C3' 5GP . . . B 2 16.522 24.33 -1.477 1 23.43 ? C3' 5GP 817 A 1 HETATM 10 O O3' 5GP . . . B 2 16.425 23.867 -0.13 1 24.71 ? O3' 5GP 817 A 1 HETATM 11 C C2' 5GP . . . B 2 16.824 25.827 -1.545 1 23.64 ? C2' 5GP 817 A 1 HETATM 12 O O2' 5GP . . . B 2 17.686 26.249 -0.479 1 27.31 ? O2' 5GP 817 A 1 HETATM 13 C C1' 5GP . . . B 2 17.517 25.972 -2.918 1 21.78 ? C1' 5GP 817 A 1 HETATM 14 N N9 5GP . . . B 2 16.576 26.525 -3.908 1 21.45 ? N9 5GP 817 A 1 HETATM 15 C C8 5GP . . . B 2 15.933 25.858 -4.923 1 19.91 ? C8 5GP 817 A 1 HETATM 16 N N7 5GP . . . B 2 15.171 26.688 -5.589 1 18.23 ? N7 5GP 817 A 1 HETATM 17 C C5 5GP . . . B 2 15.281 27.924 -5.046 1 18.81 ? C5 5GP 817 A 1 HETATM 18 C C6 5GP . . . B 2 14.709 29.211 -5.324 1 18.33 ? C6 5GP 817 A 1 HETATM 19 O O6 5GP . . . B 2 13.918 29.364 -6.243 1 19.37 ? O6 5GP 817 A 1 HETATM 20 N N1 5GP . . . B 2 15.07 30.273 -4.529 1 18.48 ? N1 5GP 817 A 1 HETATM 21 C C2 5GP . . . B 2 15.962 30.104 -3.489 1 17 ? C2 5GP 817 A 1 HETATM 22 N N2 5GP . . . B 2 16.308 31.174 -2.705 1 18.05 ? N2 5GP 817 A 1 HETATM 23 N N3 5GP . . . B 2 16.49 28.918 -3.228 1 17.47 ? N3 5GP 817 A 1 HETATM 24 C C4 5GP . . . B 2 16.185 27.828 -3.965 1 17.54 ? C4 5GP 817 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 24 #