data_3ACC # _model_server_result.job_id AXJylUHxYhcCFThQpUs0Ag _model_server_result.datetime_utc '2024-10-14 08:24:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3acc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":992}' # _entry.id 3ACC # _exptl.entry_id 3ACC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.105 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIETHYLENE DIOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3ACC _cell.length_a 67.139 _cell.length_b 67.139 _cell.length_c 152.543 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ACC _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 33.5695 58.14408 25.423833 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C4 H8 O2' _chem_comp.formula_weight 88.105 _chem_comp.id DIO _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIETHYLENE DIOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C1' DIO sing 123 n n C1 O1 DIO sing 124 n n C1 H11 DIO sing 125 n n C1 H12 DIO sing 126 n n C2 C2' DIO sing 127 n n C2 O1 DIO sing 128 n n C2 H21 DIO sing 129 n n C2 H22 DIO sing 130 n n C1' O1' DIO sing 131 n n C1' "H1'1" DIO sing 132 n n C1' "H1'2" DIO sing 133 n n C2' O1' DIO sing 134 n n C2' "H2'1" DIO sing 135 n n C2' "H2'2" DIO sing 136 n n # _atom_sites.entry_id 3ACC _atom_sites.fract_transf_matrix[1][1] 0.014894 _atom_sites.fract_transf_matrix[1][2] 0.008599 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017199 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006556 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5GP A 1 817 817 5GP 5GP . C 3 DIO A 1 991 991 DIO DIO . D 3 DIO A 1 992 992 DIO DIO . E 4 HOH A 1 993 993 HOH HOH . E 4 HOH A 2 994 994 HOH HOH . E 4 HOH A 3 995 995 HOH HOH . E 4 HOH A 4 996 996 HOH HOH . E 4 HOH A 5 997 997 HOH HOH . E 4 HOH A 6 998 998 HOH HOH . E 4 HOH A 7 999 999 HOH HOH . E 4 HOH A 8 1000 1000 HOH HOH . E 4 HOH A 9 1001 1001 HOH HOH . E 4 HOH A 10 1002 1002 HOH HOH . E 4 HOH A 11 1003 1003 HOH HOH . E 4 HOH A 12 1004 1004 HOH HOH . E 4 HOH A 13 1005 1005 HOH HOH . E 4 HOH A 14 1006 1006 HOH HOH . E 4 HOH A 15 1007 1007 HOH HOH . E 4 HOH A 16 1008 1008 HOH HOH . E 4 HOH A 17 1009 1009 HOH HOH . E 4 HOH A 18 1010 1010 HOH HOH . E 4 HOH A 19 1011 1011 HOH HOH . E 4 HOH A 20 1012 1012 HOH HOH . E 4 HOH A 21 1013 1013 HOH HOH . E 4 HOH A 22 1014 1014 HOH HOH . E 4 HOH A 23 1015 1015 HOH HOH . E 4 HOH A 24 1016 1016 HOH HOH . E 4 HOH A 25 1017 1017 HOH HOH . E 4 HOH A 26 1018 1018 HOH HOH . E 4 HOH A 27 1019 1019 HOH HOH . E 4 HOH A 28 1020 1020 HOH HOH . E 4 HOH A 29 1021 1021 HOH HOH . E 4 HOH A 30 1022 1022 HOH HOH . E 4 HOH A 31 1023 1023 HOH HOH . E 4 HOH A 32 1024 1024 HOH HOH . E 4 HOH A 33 1025 1025 HOH HOH . E 4 HOH A 34 1026 1026 HOH HOH . E 4 HOH A 35 1027 1027 HOH HOH . E 4 HOH A 36 1028 1028 HOH HOH . E 4 HOH A 37 1029 1029 HOH HOH . E 4 HOH A 38 1030 1030 HOH HOH . E 4 HOH A 39 1031 1031 HOH HOH . E 4 HOH A 40 1032 1032 HOH HOH . E 4 HOH A 41 1033 1033 HOH HOH . E 4 HOH A 42 1034 1034 HOH HOH . E 4 HOH A 43 1035 1035 HOH HOH . E 4 HOH A 44 1036 1036 HOH HOH . E 4 HOH A 45 1037 1037 HOH HOH . E 4 HOH A 46 1038 1038 HOH HOH . E 4 HOH A 47 1039 1039 HOH HOH . E 4 HOH A 48 1040 1040 HOH HOH . E 4 HOH A 49 1041 1041 HOH HOH . E 4 HOH A 50 1042 1042 HOH HOH . E 4 HOH A 51 1043 1043 HOH HOH . E 4 HOH A 52 1044 1044 HOH HOH . E 4 HOH A 53 1045 1045 HOH HOH . E 4 HOH A 54 1046 1046 HOH HOH . E 4 HOH A 55 1047 1047 HOH HOH . E 4 HOH A 56 1048 1048 HOH HOH . E 4 HOH A 57 1049 1049 HOH HOH . E 4 HOH A 58 1050 1050 HOH HOH . E 4 HOH A 59 1051 1051 HOH HOH . E 4 HOH A 60 1052 1052 HOH HOH . E 4 HOH A 61 1053 1053 HOH HOH . E 4 HOH A 62 1054 1054 HOH HOH . E 4 HOH A 63 1055 1055 HOH HOH . E 4 HOH A 64 1056 1056 HOH HOH . E 4 HOH A 65 1057 1057 HOH HOH . E 4 HOH A 66 1058 1058 HOH HOH . E 4 HOH A 67 1059 1059 HOH HOH . E 4 HOH A 68 1060 1060 HOH HOH . E 4 HOH A 69 1061 1061 HOH HOH . E 4 HOH A 70 1062 1062 HOH HOH . E 4 HOH A 71 1063 1063 HOH HOH . E 4 HOH A 72 1064 1064 HOH HOH . E 4 HOH A 73 1065 1065 HOH HOH . E 4 HOH A 74 1066 1066 HOH HOH . E 4 HOH A 75 1067 1067 HOH HOH . E 4 HOH A 76 1068 1068 HOH HOH . E 4 HOH A 77 1069 1069 HOH HOH . E 4 HOH A 78 1070 1070 HOH HOH . E 4 HOH A 79 1071 1071 HOH HOH . E 4 HOH A 80 1072 1072 HOH HOH . E 4 HOH A 81 1073 1073 HOH HOH . E 4 HOH A 82 1074 1074 HOH HOH . E 4 HOH A 83 1075 1075 HOH HOH . E 4 HOH A 84 1076 1076 HOH HOH . E 4 HOH A 85 1077 1077 HOH HOH . E 4 HOH A 86 1078 1078 HOH HOH . E 4 HOH A 87 1079 1079 HOH HOH . E 4 HOH A 88 1080 1080 HOH HOH . E 4 HOH A 89 1081 1081 HOH HOH . E 4 HOH A 90 1082 1082 HOH HOH . E 4 HOH A 91 1083 1083 HOH HOH . E 4 HOH A 92 1084 1084 HOH HOH . E 4 HOH A 93 1085 1085 HOH HOH . E 4 HOH A 94 1086 1086 HOH HOH . E 4 HOH A 95 1087 1087 HOH HOH . E 4 HOH A 96 1088 1088 HOH HOH . E 4 HOH A 97 1089 1089 HOH HOH . E 4 HOH A 98 1090 1090 HOH HOH . E 4 HOH A 99 1091 1091 HOH HOH . E 4 HOH A 100 1092 1092 HOH HOH . E 4 HOH A 101 1093 1093 HOH HOH . E 4 HOH A 102 1094 1094 HOH HOH . E 4 HOH A 103 1095 1095 HOH HOH . E 4 HOH A 104 1096 1096 HOH HOH . E 4 HOH A 105 1097 1097 HOH HOH . E 4 HOH A 106 1098 1098 HOH HOH . E 4 HOH A 107 1099 1099 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DIO . . . D 3 0.548 22.727 22.95 1 35.33 ? C1 DIO 992 A 1 HETATM 2 C C2 DIO . . . D 3 0.681 20.589 24.022 1 34.41 ? C2 DIO 992 A 1 HETATM 3 C C1' DIO . . . D 3 1.595 23.284 23.927 1 34.01 ? C1' DIO 992 A 1 HETATM 4 C C2' DIO . . . D 3 1.734 21.139 25.023 1 35.3 ? C2' DIO 992 A 1 HETATM 5 O O1 DIO . . . D 3 -0.202 21.671 23.6 1 35.46 ? O1 DIO 992 A 1 HETATM 6 O O1' DIO . . . D 3 2.486 22.195 24.349 1 35.07 ? O1' DIO 992 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #