data_3ACD # _model_server_result.job_id pEFOwS3vwNLZ9_M5FIAbFw _model_server_result.datetime_utc '2025-08-31 14:21:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3acd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":552}' # _entry.id 3ACD # _exptl.entry_id 3ACD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3ACD _cell.length_a 67.344 _cell.length_b 67.344 _cell.length_c 152.151 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ACD _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 33.672 58.321615 25.3585 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 187 n n P O2P IMP sing 188 n n P O3P IMP sing 189 n n P O5' IMP sing 190 n n O2P HOP2 IMP sing 191 n n O3P HOP3 IMP sing 192 n n O5' C5' IMP sing 193 n n C5' C4' IMP sing 194 n n C5' "H5'1" IMP sing 195 n n C5' "H5'2" IMP sing 196 n n C4' O4' IMP sing 197 n n C4' C3' IMP sing 198 n n C4' H4' IMP sing 199 n n O4' C1' IMP sing 200 n n C3' O3' IMP sing 201 n n C3' C2' IMP sing 202 n n C3' H3' IMP sing 203 n n O3' HO3' IMP sing 204 n n C2' O2' IMP sing 205 n n C2' C1' IMP sing 206 n n C2' H2' IMP sing 207 n n O2' HO2' IMP sing 208 n n C1' N9 IMP sing 209 n n C1' H1' IMP sing 210 n n N9 C8 IMP sing 211 n y N9 C4 IMP sing 212 n y C8 N7 IMP doub 213 n y C8 H8 IMP sing 214 n n N7 C5 IMP sing 215 n y C5 C6 IMP sing 216 n n C5 C4 IMP doub 217 n y C6 O6 IMP doub 218 n n C6 N1 IMP sing 219 n n N1 C2 IMP sing 220 n n N1 HN1 IMP sing 221 n n C2 N3 IMP doub 222 n n C2 H2 IMP sing 223 n n N3 C4 IMP sing 224 n n # _atom_sites.entry_id 3ACD _atom_sites.fract_transf_matrix[1][1] 0.014849 _atom_sites.fract_transf_matrix[1][2] 0.008573 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017146 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006572 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMP A 1 552 552 IMP IMP . C 3 DIO A 1 591 591 DIO DIO . D 3 DIO A 1 592 592 DIO DIO . E 4 HOH A 1 593 593 HOH HOH . E 4 HOH A 2 594 594 HOH HOH . E 4 HOH A 3 595 595 HOH HOH . E 4 HOH A 4 596 596 HOH HOH . E 4 HOH A 5 597 597 HOH HOH . E 4 HOH A 6 598 598 HOH HOH . E 4 HOH A 7 599 599 HOH HOH . E 4 HOH A 8 600 600 HOH HOH . E 4 HOH A 9 601 601 HOH HOH . E 4 HOH A 10 602 602 HOH HOH . E 4 HOH A 11 603 603 HOH HOH . E 4 HOH A 12 604 604 HOH HOH . E 4 HOH A 13 605 605 HOH HOH . E 4 HOH A 14 606 606 HOH HOH . E 4 HOH A 15 607 607 HOH HOH . E 4 HOH A 16 608 608 HOH HOH . E 4 HOH A 17 609 609 HOH HOH . E 4 HOH A 18 610 610 HOH HOH . E 4 HOH A 19 611 611 HOH HOH . E 4 HOH A 20 612 612 HOH HOH . E 4 HOH A 21 613 613 HOH HOH . E 4 HOH A 22 614 614 HOH HOH . E 4 HOH A 23 615 615 HOH HOH . E 4 HOH A 24 616 616 HOH HOH . E 4 HOH A 25 617 617 HOH HOH . E 4 HOH A 26 618 618 HOH HOH . E 4 HOH A 27 619 619 HOH HOH . E 4 HOH A 28 620 620 HOH HOH . E 4 HOH A 29 621 621 HOH HOH . E 4 HOH A 30 622 622 HOH HOH . E 4 HOH A 31 623 623 HOH HOH . E 4 HOH A 32 624 624 HOH HOH . E 4 HOH A 33 625 625 HOH HOH . E 4 HOH A 34 626 626 HOH HOH . E 4 HOH A 35 627 627 HOH HOH . E 4 HOH A 36 628 628 HOH HOH . E 4 HOH A 37 629 629 HOH HOH . E 4 HOH A 38 630 630 HOH HOH . E 4 HOH A 39 631 631 HOH HOH . E 4 HOH A 40 632 632 HOH HOH . E 4 HOH A 41 633 633 HOH HOH . E 4 HOH A 42 634 634 HOH HOH . E 4 HOH A 43 635 635 HOH HOH . E 4 HOH A 44 636 636 HOH HOH . E 4 HOH A 45 637 637 HOH HOH . E 4 HOH A 46 638 638 HOH HOH . E 4 HOH A 47 639 639 HOH HOH . E 4 HOH A 48 640 640 HOH HOH . E 4 HOH A 49 641 641 HOH HOH . E 4 HOH A 50 642 642 HOH HOH . E 4 HOH A 51 643 643 HOH HOH . E 4 HOH A 52 644 644 HOH HOH . E 4 HOH A 53 645 645 HOH HOH . E 4 HOH A 54 646 646 HOH HOH . E 4 HOH A 55 647 647 HOH HOH . E 4 HOH A 56 648 648 HOH HOH . E 4 HOH A 57 649 649 HOH HOH . E 4 HOH A 58 650 650 HOH HOH . E 4 HOH A 59 651 651 HOH HOH . E 4 HOH A 60 652 652 HOH HOH . E 4 HOH A 61 653 653 HOH HOH . E 4 HOH A 62 654 654 HOH HOH . E 4 HOH A 63 655 655 HOH HOH . E 4 HOH A 64 656 656 HOH HOH . E 4 HOH A 65 657 657 HOH HOH . E 4 HOH A 66 658 658 HOH HOH . E 4 HOH A 67 659 659 HOH HOH . E 4 HOH A 68 660 660 HOH HOH . E 4 HOH A 69 661 661 HOH HOH . E 4 HOH A 70 662 662 HOH HOH . E 4 HOH A 71 663 663 HOH HOH . E 4 HOH A 72 664 664 HOH HOH . E 4 HOH A 73 665 665 HOH HOH . E 4 HOH A 74 666 666 HOH HOH . E 4 HOH A 75 667 667 HOH HOH . E 4 HOH A 76 668 668 HOH HOH . E 4 HOH A 77 669 669 HOH HOH . E 4 HOH A 78 670 670 HOH HOH . E 4 HOH A 79 671 671 HOH HOH . E 4 HOH A 80 672 672 HOH HOH . E 4 HOH A 81 673 673 HOH HOH . E 4 HOH A 82 674 674 HOH HOH . E 4 HOH A 83 675 675 HOH HOH . E 4 HOH A 84 676 676 HOH HOH . E 4 HOH A 85 677 677 HOH HOH . E 4 HOH A 86 678 678 HOH HOH . E 4 HOH A 87 679 679 HOH HOH . E 4 HOH A 88 680 680 HOH HOH . E 4 HOH A 89 681 681 HOH HOH . E 4 HOH A 90 682 682 HOH HOH . E 4 HOH A 91 683 683 HOH HOH . E 4 HOH A 92 684 684 HOH HOH . E 4 HOH A 93 685 685 HOH HOH . E 4 HOH A 94 686 686 HOH HOH . E 4 HOH A 95 687 687 HOH HOH . E 4 HOH A 96 688 688 HOH HOH . E 4 HOH A 97 689 689 HOH HOH . E 4 HOH A 98 690 690 HOH HOH . E 4 HOH A 99 691 691 HOH HOH . E 4 HOH A 100 692 692 HOH HOH . E 4 HOH A 101 693 693 HOH HOH . E 4 HOH A 102 694 694 HOH HOH . E 4 HOH A 103 695 695 HOH HOH . E 4 HOH A 104 696 696 HOH HOH . E 4 HOH A 105 697 697 HOH HOH . E 4 HOH A 106 698 698 HOH HOH . E 4 HOH A 107 700 700 HOH HOH . E 4 HOH A 108 701 701 HOH HOH . E 4 HOH A 109 702 702 HOH HOH . E 4 HOH A 110 703 703 HOH HOH . E 4 HOH A 111 704 704 HOH HOH . E 4 HOH A 112 705 705 HOH HOH . E 4 HOH A 113 706 706 HOH HOH . E 4 HOH A 114 707 707 HOH HOH . E 4 HOH A 115 708 708 HOH HOH . E 4 HOH A 116 709 709 HOH HOH . E 4 HOH A 117 710 710 HOH HOH . E 4 HOH A 118 711 711 HOH HOH . E 4 HOH A 119 712 712 HOH HOH . E 4 HOH A 120 713 713 HOH HOH . E 4 HOH A 121 714 714 HOH HOH . E 4 HOH A 122 715 715 HOH HOH . E 4 HOH A 123 716 716 HOH HOH . E 4 HOH A 124 717 717 HOH HOH . E 4 HOH A 125 718 718 HOH HOH . E 4 HOH A 126 719 719 HOH HOH . E 4 HOH A 127 720 720 HOH HOH . E 4 HOH A 128 721 721 HOH HOH . E 4 HOH A 129 722 722 HOH HOH . E 4 HOH A 130 723 723 HOH HOH . E 4 HOH A 131 724 724 HOH HOH . E 4 HOH A 132 725 725 HOH HOH . E 4 HOH A 133 726 726 HOH HOH . E 4 HOH A 134 727 727 HOH HOH . E 4 HOH A 135 728 728 HOH HOH . E 4 HOH A 136 729 729 HOH HOH . E 4 HOH A 137 730 730 HOH HOH . E 4 HOH A 138 731 731 HOH HOH . E 4 HOH A 139 732 732 HOH HOH . E 4 HOH A 140 733 733 HOH HOH . E 4 HOH A 141 734 734 HOH HOH . E 4 HOH A 142 735 735 HOH HOH . E 4 HOH A 143 736 736 HOH HOH . E 4 HOH A 144 737 737 HOH HOH . E 4 HOH A 145 738 738 HOH HOH . E 4 HOH A 146 739 739 HOH HOH . E 4 HOH A 147 740 740 HOH HOH . E 4 HOH A 148 741 741 HOH HOH . E 4 HOH A 149 742 742 HOH HOH . E 4 HOH A 150 743 743 HOH HOH . E 4 HOH A 151 744 744 HOH HOH . E 4 HOH A 152 745 745 HOH HOH . E 4 HOH A 153 746 746 HOH HOH . E 4 HOH A 154 747 747 HOH HOH . E 4 HOH A 155 748 748 HOH HOH . E 4 HOH A 156 749 749 HOH HOH . E 4 HOH A 157 750 750 HOH HOH . E 4 HOH A 158 751 751 HOH HOH . E 4 HOH A 159 752 752 HOH HOH . E 4 HOH A 160 753 753 HOH HOH . E 4 HOH A 161 754 754 HOH HOH . E 4 HOH A 162 755 755 HOH HOH . E 4 HOH A 163 756 756 HOH HOH . E 4 HOH A 164 757 757 HOH HOH . E 4 HOH A 165 758 758 HOH HOH . E 4 HOH A 166 759 759 HOH HOH . E 4 HOH A 167 760 760 HOH HOH . E 4 HOH A 168 761 761 HOH HOH . E 4 HOH A 169 762 762 HOH HOH . E 4 HOH A 170 763 763 HOH HOH . E 4 HOH A 171 764 764 HOH HOH . E 4 HOH A 172 765 765 HOH HOH . E 4 HOH A 173 766 766 HOH HOH . E 4 HOH A 174 767 767 HOH HOH . E 4 HOH A 175 768 768 HOH HOH . E 4 HOH A 176 769 769 HOH HOH . E 4 HOH A 177 770 770 HOH HOH . E 4 HOH A 178 771 771 HOH HOH . E 4 HOH A 179 772 772 HOH HOH . E 4 HOH A 180 773 773 HOH HOH . E 4 HOH A 181 774 774 HOH HOH . E 4 HOH A 182 775 775 HOH HOH . E 4 HOH A 183 776 776 HOH HOH . E 4 HOH A 184 777 777 HOH HOH . E 4 HOH A 185 778 778 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . B 2 16.799 20.916 -4.528 1 19.55 ? P IMP 552 A 1 HETATM 2 O O1P IMP . . . B 2 17.033 21.086 -5.978 1 20.53 ? O1P IMP 552 A 1 HETATM 3 O O2P IMP . . . B 2 17.848 19.854 -3.943 1 19.68 ? O2P IMP 552 A 1 HETATM 4 O O3P IMP . . . B 2 15.294 20.393 -4.287 1 17.37 ? O3P IMP 552 A 1 HETATM 5 O O5' IMP . . . B 2 16.992 22.357 -3.813 1 22.6 ? O5' IMP 552 A 1 HETATM 6 C C5' IMP . . . B 2 17.509 22.405 -2.485 1 23.56 ? C5' IMP 552 A 1 HETATM 7 C C4' IMP . . . B 2 17.678 23.849 -2.007 1 20.89 ? C4' IMP 552 A 1 HETATM 8 O O4' IMP . . . B 2 17.866 24.754 -3.137 1 19.19 ? O4' IMP 552 A 1 HETATM 9 C C3' IMP . . . B 2 16.374 24.362 -1.354 1 20.02 ? C3' IMP 552 A 1 HETATM 10 O O3' IMP . . . B 2 16.249 23.921 -0.001 1 19.2 ? O3' IMP 552 A 1 HETATM 11 C C2' IMP . . . B 2 16.591 25.882 -1.441 1 19.13 ? C2' IMP 552 A 1 HETATM 12 O O2' IMP . . . B 2 17.379 26.358 -0.345 1 23.44 ? O2' IMP 552 A 1 HETATM 13 C C1' IMP . . . B 2 17.347 26.05 -2.77 1 18.72 ? C1' IMP 552 A 1 HETATM 14 N N9 IMP . . . B 2 16.414 26.566 -3.8 1 16.59 ? N9 IMP 552 A 1 HETATM 15 C C8 IMP . . . B 2 15.835 25.865 -4.833 1 17.34 ? C8 IMP 552 A 1 HETATM 16 N N7 IMP . . . B 2 15.064 26.653 -5.535 1 15.9 ? N7 IMP 552 A 1 HETATM 17 C C5 IMP . . . B 2 15.094 27.891 -4.998 1 16.21 ? C5 IMP 552 A 1 HETATM 18 C C6 IMP . . . B 2 14.478 29.146 -5.312 1 16.04 ? C6 IMP 552 A 1 HETATM 19 O O6 IMP . . . B 2 13.716 29.249 -6.259 1 16.21 ? O6 IMP 552 A 1 HETATM 20 N N1 IMP . . . B 2 14.757 30.228 -4.513 1 16.33 ? N1 IMP 552 A 1 HETATM 21 C C2 IMP . . . B 2 15.613 30.119 -3.439 1 15.5 ? C2 IMP 552 A 1 HETATM 22 N N3 IMP . . . B 2 16.189 28.974 -3.142 1 14.36 ? N3 IMP 552 A 1 HETATM 23 C C4 IMP . . . B 2 15.963 27.85 -3.878 1 15.93 ? C4 IMP 552 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 4 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 425 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #