data_3ACD # _model_server_result.job_id MHlZzZooGzbHxzoViAf86A _model_server_result.datetime_utc '2024-11-18 09:42:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3acd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":592}' # _entry.id 3ACD # _exptl.entry_id 3ACD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.105 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIETHYLENE DIOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3ACD _cell.length_a 67.344 _cell.length_b 67.344 _cell.length_c 152.151 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ACD _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 33.672 58.321615 25.3585 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C4 H8 O2' _chem_comp.formula_weight 88.105 _chem_comp.id DIO _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIETHYLENE DIOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C1' DIO sing 83 n n C1 O1 DIO sing 84 n n C1 H11 DIO sing 85 n n C1 H12 DIO sing 86 n n C2 C2' DIO sing 87 n n C2 O1 DIO sing 88 n n C2 H21 DIO sing 89 n n C2 H22 DIO sing 90 n n C1' O1' DIO sing 91 n n C1' "H1'1" DIO sing 92 n n C1' "H1'2" DIO sing 93 n n C2' O1' DIO sing 94 n n C2' "H2'1" DIO sing 95 n n C2' "H2'2" DIO sing 96 n n # _atom_sites.entry_id 3ACD _atom_sites.fract_transf_matrix[1][1] 0.014849 _atom_sites.fract_transf_matrix[1][2] 0.008573 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017146 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006572 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMP A 1 552 552 IMP IMP . C 3 DIO A 1 591 591 DIO DIO . D 3 DIO A 1 592 592 DIO DIO . E 4 HOH A 1 593 593 HOH HOH . E 4 HOH A 2 594 594 HOH HOH . E 4 HOH A 3 595 595 HOH HOH . E 4 HOH A 4 596 596 HOH HOH . E 4 HOH A 5 597 597 HOH HOH . E 4 HOH A 6 598 598 HOH HOH . E 4 HOH A 7 599 599 HOH HOH . E 4 HOH A 8 600 600 HOH HOH . E 4 HOH A 9 601 601 HOH HOH . E 4 HOH A 10 602 602 HOH HOH . E 4 HOH A 11 603 603 HOH HOH . E 4 HOH A 12 604 604 HOH HOH . E 4 HOH A 13 605 605 HOH HOH . E 4 HOH A 14 606 606 HOH HOH . E 4 HOH A 15 607 607 HOH HOH . E 4 HOH A 16 608 608 HOH HOH . E 4 HOH A 17 609 609 HOH HOH . E 4 HOH A 18 610 610 HOH HOH . E 4 HOH A 19 611 611 HOH HOH . E 4 HOH A 20 612 612 HOH HOH . E 4 HOH A 21 613 613 HOH HOH . E 4 HOH A 22 614 614 HOH HOH . E 4 HOH A 23 615 615 HOH HOH . E 4 HOH A 24 616 616 HOH HOH . E 4 HOH A 25 617 617 HOH HOH . E 4 HOH A 26 618 618 HOH HOH . E 4 HOH A 27 619 619 HOH HOH . E 4 HOH A 28 620 620 HOH HOH . E 4 HOH A 29 621 621 HOH HOH . E 4 HOH A 30 622 622 HOH HOH . E 4 HOH A 31 623 623 HOH HOH . E 4 HOH A 32 624 624 HOH HOH . E 4 HOH A 33 625 625 HOH HOH . E 4 HOH A 34 626 626 HOH HOH . E 4 HOH A 35 627 627 HOH HOH . E 4 HOH A 36 628 628 HOH HOH . E 4 HOH A 37 629 629 HOH HOH . E 4 HOH A 38 630 630 HOH HOH . E 4 HOH A 39 631 631 HOH HOH . E 4 HOH A 40 632 632 HOH HOH . E 4 HOH A 41 633 633 HOH HOH . E 4 HOH A 42 634 634 HOH HOH . E 4 HOH A 43 635 635 HOH HOH . E 4 HOH A 44 636 636 HOH HOH . E 4 HOH A 45 637 637 HOH HOH . E 4 HOH A 46 638 638 HOH HOH . E 4 HOH A 47 639 639 HOH HOH . E 4 HOH A 48 640 640 HOH HOH . E 4 HOH A 49 641 641 HOH HOH . E 4 HOH A 50 642 642 HOH HOH . E 4 HOH A 51 643 643 HOH HOH . E 4 HOH A 52 644 644 HOH HOH . E 4 HOH A 53 645 645 HOH HOH . E 4 HOH A 54 646 646 HOH HOH . E 4 HOH A 55 647 647 HOH HOH . E 4 HOH A 56 648 648 HOH HOH . E 4 HOH A 57 649 649 HOH HOH . E 4 HOH A 58 650 650 HOH HOH . E 4 HOH A 59 651 651 HOH HOH . E 4 HOH A 60 652 652 HOH HOH . E 4 HOH A 61 653 653 HOH HOH . E 4 HOH A 62 654 654 HOH HOH . E 4 HOH A 63 655 655 HOH HOH . E 4 HOH A 64 656 656 HOH HOH . E 4 HOH A 65 657 657 HOH HOH . E 4 HOH A 66 658 658 HOH HOH . E 4 HOH A 67 659 659 HOH HOH . E 4 HOH A 68 660 660 HOH HOH . E 4 HOH A 69 661 661 HOH HOH . E 4 HOH A 70 662 662 HOH HOH . E 4 HOH A 71 663 663 HOH HOH . E 4 HOH A 72 664 664 HOH HOH . E 4 HOH A 73 665 665 HOH HOH . E 4 HOH A 74 666 666 HOH HOH . E 4 HOH A 75 667 667 HOH HOH . E 4 HOH A 76 668 668 HOH HOH . E 4 HOH A 77 669 669 HOH HOH . E 4 HOH A 78 670 670 HOH HOH . E 4 HOH A 79 671 671 HOH HOH . E 4 HOH A 80 672 672 HOH HOH . E 4 HOH A 81 673 673 HOH HOH . E 4 HOH A 82 674 674 HOH HOH . E 4 HOH A 83 675 675 HOH HOH . E 4 HOH A 84 676 676 HOH HOH . E 4 HOH A 85 677 677 HOH HOH . E 4 HOH A 86 678 678 HOH HOH . E 4 HOH A 87 679 679 HOH HOH . E 4 HOH A 88 680 680 HOH HOH . E 4 HOH A 89 681 681 HOH HOH . E 4 HOH A 90 682 682 HOH HOH . E 4 HOH A 91 683 683 HOH HOH . E 4 HOH A 92 684 684 HOH HOH . E 4 HOH A 93 685 685 HOH HOH . E 4 HOH A 94 686 686 HOH HOH . E 4 HOH A 95 687 687 HOH HOH . E 4 HOH A 96 688 688 HOH HOH . E 4 HOH A 97 689 689 HOH HOH . E 4 HOH A 98 690 690 HOH HOH . E 4 HOH A 99 691 691 HOH HOH . E 4 HOH A 100 692 692 HOH HOH . E 4 HOH A 101 693 693 HOH HOH . E 4 HOH A 102 694 694 HOH HOH . E 4 HOH A 103 695 695 HOH HOH . E 4 HOH A 104 696 696 HOH HOH . E 4 HOH A 105 697 697 HOH HOH . E 4 HOH A 106 698 698 HOH HOH . E 4 HOH A 107 700 700 HOH HOH . E 4 HOH A 108 701 701 HOH HOH . E 4 HOH A 109 702 702 HOH HOH . E 4 HOH A 110 703 703 HOH HOH . E 4 HOH A 111 704 704 HOH HOH . E 4 HOH A 112 705 705 HOH HOH . E 4 HOH A 113 706 706 HOH HOH . E 4 HOH A 114 707 707 HOH HOH . E 4 HOH A 115 708 708 HOH HOH . E 4 HOH A 116 709 709 HOH HOH . E 4 HOH A 117 710 710 HOH HOH . E 4 HOH A 118 711 711 HOH HOH . E 4 HOH A 119 712 712 HOH HOH . E 4 HOH A 120 713 713 HOH HOH . E 4 HOH A 121 714 714 HOH HOH . E 4 HOH A 122 715 715 HOH HOH . E 4 HOH A 123 716 716 HOH HOH . E 4 HOH A 124 717 717 HOH HOH . E 4 HOH A 125 718 718 HOH HOH . E 4 HOH A 126 719 719 HOH HOH . E 4 HOH A 127 720 720 HOH HOH . E 4 HOH A 128 721 721 HOH HOH . E 4 HOH A 129 722 722 HOH HOH . E 4 HOH A 130 723 723 HOH HOH . E 4 HOH A 131 724 724 HOH HOH . E 4 HOH A 132 725 725 HOH HOH . E 4 HOH A 133 726 726 HOH HOH . E 4 HOH A 134 727 727 HOH HOH . E 4 HOH A 135 728 728 HOH HOH . E 4 HOH A 136 729 729 HOH HOH . E 4 HOH A 137 730 730 HOH HOH . E 4 HOH A 138 731 731 HOH HOH . E 4 HOH A 139 732 732 HOH HOH . E 4 HOH A 140 733 733 HOH HOH . E 4 HOH A 141 734 734 HOH HOH . E 4 HOH A 142 735 735 HOH HOH . E 4 HOH A 143 736 736 HOH HOH . E 4 HOH A 144 737 737 HOH HOH . E 4 HOH A 145 738 738 HOH HOH . E 4 HOH A 146 739 739 HOH HOH . E 4 HOH A 147 740 740 HOH HOH . E 4 HOH A 148 741 741 HOH HOH . E 4 HOH A 149 742 742 HOH HOH . E 4 HOH A 150 743 743 HOH HOH . E 4 HOH A 151 744 744 HOH HOH . E 4 HOH A 152 745 745 HOH HOH . E 4 HOH A 153 746 746 HOH HOH . E 4 HOH A 154 747 747 HOH HOH . E 4 HOH A 155 748 748 HOH HOH . E 4 HOH A 156 749 749 HOH HOH . E 4 HOH A 157 750 750 HOH HOH . E 4 HOH A 158 751 751 HOH HOH . E 4 HOH A 159 752 752 HOH HOH . E 4 HOH A 160 753 753 HOH HOH . E 4 HOH A 161 754 754 HOH HOH . E 4 HOH A 162 755 755 HOH HOH . E 4 HOH A 163 756 756 HOH HOH . E 4 HOH A 164 757 757 HOH HOH . E 4 HOH A 165 758 758 HOH HOH . E 4 HOH A 166 759 759 HOH HOH . E 4 HOH A 167 760 760 HOH HOH . E 4 HOH A 168 761 761 HOH HOH . E 4 HOH A 169 762 762 HOH HOH . E 4 HOH A 170 763 763 HOH HOH . E 4 HOH A 171 764 764 HOH HOH . E 4 HOH A 172 765 765 HOH HOH . E 4 HOH A 173 766 766 HOH HOH . E 4 HOH A 174 767 767 HOH HOH . E 4 HOH A 175 768 768 HOH HOH . E 4 HOH A 176 769 769 HOH HOH . E 4 HOH A 177 770 770 HOH HOH . E 4 HOH A 178 771 771 HOH HOH . E 4 HOH A 179 772 772 HOH HOH . E 4 HOH A 180 773 773 HOH HOH . E 4 HOH A 181 774 774 HOH HOH . E 4 HOH A 182 775 775 HOH HOH . E 4 HOH A 183 776 776 HOH HOH . E 4 HOH A 184 777 777 HOH HOH . E 4 HOH A 185 778 778 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DIO . . . D 3 0.6 23.041 23.043 1 28.57 ? C1 DIO 592 A 1 HETATM 2 C C2 DIO . . . D 3 0.797 20.889 24.083 1 25.77 ? C2 DIO 592 A 1 HETATM 3 C C1' DIO . . . D 3 1.747 23.568 23.915 1 26.1 ? C1' DIO 592 A 1 HETATM 4 C C2' DIO . . . D 3 1.951 21.41 24.981 1 27.67 ? C2' DIO 592 A 1 HETATM 5 O O1 DIO . . . D 3 -0.104 21.992 23.756 1 29.19 ? O1 DIO 592 A 1 HETATM 6 O O1' DIO . . . D 3 2.654 22.457 24.244 1 30.43 ? O1' DIO 592 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #