data_3ADV
#
_model_server_result.job_id            -qcHLAShzhzmbdAaU3sGtQ 
_model_server_result.datetime_utc      '2024-11-01 13:35:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3adv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":3}' 
#
_entry.id    3ADV 
#
_exptl.entry_id    3ADV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              176.215 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            SEROTONIN 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.89 
_cell.angle_gamma         90 
_cell.entry_id            3ADV 
_cell.length_a            93.063 
_cell.length_b            61.46 
_cell.length_c            118.469 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ADV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G 1 1 
A,C,D,F 2 1 
B,E,G 2 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_455 x-1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 -46.5315 30.73 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
_chem_comp.formula           'C10 H12 N2 O' 
_chem_comp.formula_weight    176.215 
_chem_comp.id                SRO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              SEROTONIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-(2-AMINOETHYL)-1H-INDOL-5-OL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OH CZ3 SRO sing 290 n n 
OH HOH SRO sing 291 n n 
CZ3 CE3 SRO doub 292 n y 
CZ3 CH2 SRO sing 293 n y 
CH2 CZ2 SRO doub 294 n y 
CH2 HH2 SRO sing 295 n n 
CZ2 CE2 SRO sing 296 n y 
CZ2 HZ2 SRO sing 297 n n 
CE2 NE1 SRO sing 298 n y 
CE2 CD2 SRO doub 299 n y 
NE1 CD1 SRO sing 300 n y 
NE1 HNE1 SRO sing 301 n n 
CD1 CG SRO doub 302 n y 
CD1 HD1 SRO sing 303 n n 
CG CB SRO sing 304 n n 
CG CD2 SRO sing 305 n y 
CD2 CE3 SRO sing 306 n y 
CE3 HE3 SRO sing 307 n n 
CB CA SRO sing 308 n n 
CB HB1 SRO sing 309 n n 
CB HB2 SRO sing 310 n n 
CA NZ SRO sing 311 n n 
CA HA1 SRO sing 312 n n 
CA HA2 SRO sing 313 n n 
NZ HNZ1 SRO sing 314 n n 
NZ HNZ2 SRO sing 315 n n 
#
_atom_sites.entry_id                     3ADV 
_atom_sites.fract_transf_matrix[1][1]    0.010745 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002459 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016271 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008659 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SRO A 1 1 1 SRO SRO . 
D 2 SRO A 1 3 3 SRO SRO . 
E 2 SRO B 1 4 4 SRO SRO . 
F 3 HOH A 1 1002 1002 HOH HOH . 
F 3 HOH A 2 1003 1003 HOH HOH . 
F 3 HOH A 3 1004 1004 HOH HOH . 
F 3 HOH A 4 1006 1006 HOH HOH . 
F 3 HOH A 5 1008 1008 HOH HOH . 
F 3 HOH A 6 1010 1010 HOH HOH . 
F 3 HOH A 7 1011 1011 HOH HOH . 
F 3 HOH A 8 1016 1016 HOH HOH . 
F 3 HOH A 9 1017 1017 HOH HOH . 
F 3 HOH A 10 1020 1020 HOH HOH . 
F 3 HOH A 11 1021 1021 HOH HOH . 
F 3 HOH A 12 1022 1022 HOH HOH . 
F 3 HOH A 13 1024 1024 HOH HOH . 
F 3 HOH A 14 1025 1025 HOH HOH . 
F 3 HOH A 15 1027 1027 HOH HOH . 
F 3 HOH A 16 1028 1028 HOH HOH . 
F 3 HOH A 17 1034 1034 HOH HOH . 
F 3 HOH A 18 1035 1035 HOH HOH . 
F 3 HOH A 19 1037 1037 HOH HOH . 
F 3 HOH A 20 1038 1038 HOH HOH . 
F 3 HOH A 21 1039 1039 HOH HOH . 
F 3 HOH A 22 1041 1041 HOH HOH . 
F 3 HOH A 23 1042 1042 HOH HOH . 
F 3 HOH A 24 1044 1044 HOH HOH . 
F 3 HOH A 25 1046 1046 HOH HOH . 
F 3 HOH A 26 1048 1048 HOH HOH . 
F 3 HOH A 27 1049 1049 HOH HOH . 
F 3 HOH A 28 1050 1050 HOH HOH . 
F 3 HOH A 29 1052 1052 HOH HOH . 
F 3 HOH A 30 1054 1054 HOH HOH . 
F 3 HOH A 31 1055 1055 HOH HOH . 
F 3 HOH A 32 1057 1057 HOH HOH . 
F 3 HOH A 33 1062 1062 HOH HOH . 
F 3 HOH A 34 1063 1063 HOH HOH . 
F 3 HOH A 35 1064 1064 HOH HOH . 
F 3 HOH A 36 1070 1070 HOH HOH . 
F 3 HOH A 37 1072 1072 HOH HOH . 
F 3 HOH A 38 1073 1073 HOH HOH . 
F 3 HOH A 39 1075 1075 HOH HOH . 
F 3 HOH A 40 1077 1077 HOH HOH . 
F 3 HOH A 41 1078 1078 HOH HOH . 
F 3 HOH A 42 1084 1084 HOH HOH . 
F 3 HOH A 43 1090 1090 HOH HOH . 
F 3 HOH A 44 1091 1091 HOH HOH . 
F 3 HOH A 45 1093 1093 HOH HOH . 
F 3 HOH A 46 1095 1095 HOH HOH . 
F 3 HOH A 47 1098 1098 HOH HOH . 
F 3 HOH A 48 1102 1102 HOH HOH . 
F 3 HOH A 49 1104 1104 HOH HOH . 
F 3 HOH A 50 1105 1105 HOH HOH . 
F 3 HOH A 51 1106 1106 HOH HOH . 
F 3 HOH A 52 1107 1107 HOH HOH . 
F 3 HOH A 53 1109 1109 HOH HOH . 
F 3 HOH A 54 1112 1112 HOH HOH . 
F 3 HOH A 55 1113 1113 HOH HOH . 
F 3 HOH A 56 1115 1115 HOH HOH . 
F 3 HOH A 57 1116 1116 HOH HOH . 
F 3 HOH A 58 1117 1117 HOH HOH . 
F 3 HOH A 59 1121 1121 HOH HOH . 
F 3 HOH A 60 1128 1128 HOH HOH . 
G 3 HOH B 1 1001 1001 HOH HOH . 
G 3 HOH B 2 1005 1005 HOH HOH . 
G 3 HOH B 3 1007 1007 HOH HOH . 
G 3 HOH B 4 1012 1012 HOH HOH . 
G 3 HOH B 5 1013 1013 HOH HOH . 
G 3 HOH B 6 1014 1014 HOH HOH . 
G 3 HOH B 7 1018 1018 HOH HOH . 
G 3 HOH B 8 1019 1019 HOH HOH . 
G 3 HOH B 9 1023 1023 HOH HOH . 
G 3 HOH B 10 1026 1026 HOH HOH . 
G 3 HOH B 11 1029 1029 HOH HOH . 
G 3 HOH B 12 1030 1030 HOH HOH . 
G 3 HOH B 13 1031 1031 HOH HOH . 
G 3 HOH B 14 1032 1032 HOH HOH . 
G 3 HOH B 15 1033 1033 HOH HOH . 
G 3 HOH B 16 1036 1036 HOH HOH . 
G 3 HOH B 17 1043 1043 HOH HOH . 
G 3 HOH B 18 1045 1045 HOH HOH . 
G 3 HOH B 19 1047 1047 HOH HOH . 
G 3 HOH B 20 1051 1051 HOH HOH . 
G 3 HOH B 21 1053 1053 HOH HOH . 
G 3 HOH B 22 1056 1056 HOH HOH . 
G 3 HOH B 23 1058 1058 HOH HOH . 
G 3 HOH B 24 1059 1059 HOH HOH . 
G 3 HOH B 25 1060 1060 HOH HOH . 
G 3 HOH B 26 1061 1061 HOH HOH . 
G 3 HOH B 27 1065 1065 HOH HOH . 
G 3 HOH B 28 1066 1066 HOH HOH . 
G 3 HOH B 29 1067 1067 HOH HOH . 
G 3 HOH B 30 1068 1068 HOH HOH . 
G 3 HOH B 31 1071 1071 HOH HOH . 
G 3 HOH B 32 1074 1074 HOH HOH . 
G 3 HOH B 33 1076 1076 HOH HOH . 
G 3 HOH B 34 1079 1079 HOH HOH . 
G 3 HOH B 35 1080 1080 HOH HOH . 
G 3 HOH B 36 1085 1085 HOH HOH . 
G 3 HOH B 37 1089 1089 HOH HOH . 
G 3 HOH B 38 1092 1092 HOH HOH . 
G 3 HOH B 39 1094 1094 HOH HOH . 
G 3 HOH B 40 1099 1099 HOH HOH . 
G 3 HOH B 41 1103 1103 HOH HOH . 
G 3 HOH B 42 1108 1108 HOH HOH . 
G 3 HOH B 43 1111 1111 HOH HOH . 
G 3 HOH B 44 1118 1118 HOH HOH . 
G 3 HOH B 45 1120 1120 HOH HOH . 
G 3 HOH B 46 1122 1122 HOH HOH . 
G 3 HOH B 47 1124 1124 HOH HOH . 
G 3 HOH B 48 1130 1130 HOH HOH . 
G 3 HOH B 49 1132 1132 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OH SRO . . . D 2 10.292 65.109 9.482 1 83.89 ? OH SRO 3 A 1 
HETATM 2 C CZ3 SRO . . . D 2 9.271 64.556 10.196 1 85.46 ? CZ3 SRO 3 A 1 
HETATM 3 C CH2 SRO . . . D 2 8.023 65.235 10.301 1 85.95 ? CH2 SRO 3 A 1 
HETATM 4 C CZ2 SRO . . . D 2 6.96 64.673 11.035 1 85.6 ? CZ2 SRO 3 A 1 
HETATM 5 C CE2 SRO . . . D 2 7.126 63.417 11.681 1 85.81 ? CE2 SRO 3 A 1 
HETATM 6 N NE1 SRO . . . D 2 6.297 62.626 12.45 1 85.07 ? NE1 SRO 3 A 1 
HETATM 7 C CD1 SRO . . . D 2 6.959 61.489 12.834 1 84.5 ? CD1 SRO 3 A 1 
HETATM 8 C CG SRO . . . D 2 8.224 61.484 12.341 1 84.78 ? CG SRO 3 A 1 
HETATM 9 C CD2 SRO . . . D 2 8.381 62.73 11.576 1 85.34 ? CD2 SRO 3 A 1 
HETATM 10 C CE3 SRO . . . D 2 9.452 63.312 10.83 1 85.64 ? CE3 SRO 3 A 1 
HETATM 11 C CB SRO . . . D 2 9.293 60.41 12.529 1 82.81 ? CB SRO 3 A 1 
HETATM 12 C CA SRO . . . D 2 8.674 59.012 12.702 1 81.96 ? CA SRO 3 A 1 
HETATM 13 N NZ SRO . . . D 2 8.458 58.381 11.394 1 79.94 ? NZ SRO 3 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           13 
#