data_3ADW # _model_server_result.job_id dZIYuTu6VwbWmDBZgWKnQw _model_server_result.datetime_utc '2024-12-04 07:07:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3adw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2}' # _entry.id 3ADW # _exptl.entry_id 3ADW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 318.45 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(5E,8E,11Z,13E)-15-oxoicosa-5,8,11,13-tetraenoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.84 _cell.angle_gamma 90 _cell.entry_id 3ADW _cell.length_a 93.034 _cell.length_b 61.181 _cell.length_c 118.475 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ADW _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,C,D,F 2 1 B,E,G 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 x-1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 -46.517 30.5905 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D C9 OCR . A OCR 1 1_555 A SG CYS 95 A CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.861 ? covale ? covale2 E C9 OCR . B OCR 2 1_555 B SG CYS 95 B CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.858 ? # _chem_comp.formula 'C20 H30 O3' _chem_comp.formula_weight 318.45 _chem_comp.id OCR _chem_comp.mon_nstd_flag . _chem_comp.name '(5E,8E,11Z,13E)-15-oxoicosa-5,8,11,13-tetraenoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '15-oxo-eicosatetraenoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 OCR sing 264 n n C2 C3 OCR sing 265 n n C3 C4 OCR sing 266 n n C4 C5 OCR sing 267 n n C5 C6 OCR sing 268 n n C6 O7 OCR doub 269 n n C6 C8 OCR sing 270 n n C8 C9 OCR doub 271 n n C9 C11 OCR sing 272 n n C11 C12 OCR doub 273 n n C12 C13 OCR sing 274 n n C13 C14 OCR sing 275 n n C14 C15 OCR doub 276 n n C15 C16 OCR sing 277 n n C16 C17 OCR sing 278 n n C17 C18 OCR doub 279 n n C18 C19 OCR sing 280 n n C19 C20 OCR sing 281 n n C20 C21 OCR sing 282 e n C21 C22 OCR sing 283 n n C22 O23 OCR sing 284 n n C22 O24 OCR doub 285 n n C1 H1 OCR sing 286 z n C1 H1A OCR sing 287 n n C1 H1B OCR sing 288 n n C2 H2 OCR sing 289 n n C2 H2A OCR sing 290 n n C3 H3 OCR sing 291 n n C3 H3A OCR sing 292 n n C4 H4 OCR sing 293 e n C4 H4A OCR sing 294 n n C5 H5 OCR sing 295 n n C5 H5A OCR sing 296 n n C8 H8 OCR sing 297 n n C9 H9 OCR sing 298 n n C11 H11 OCR sing 299 n n C12 H12 OCR sing 300 e n C13 H13 OCR sing 301 n n C13 H13A OCR sing 302 n n C14 H14 OCR sing 303 n n C15 H15 OCR sing 304 n n C16 H16 OCR sing 305 n n C16 H16A OCR sing 306 n n C17 H17 OCR sing 307 n n C18 H18 OCR sing 308 n n C19 H19 OCR sing 309 n n C19 H19A OCR sing 310 n n C20 H20 OCR sing 311 n n C20 H20A OCR sing 312 n n C21 H21 OCR sing 313 n n C21 H21A OCR sing 314 n n O23 HO23 OCR sing 315 n n # _atom_sites.entry_id 3ADW _atom_sites.fract_transf_matrix[1][1] 0.010749 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00245 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016345 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008657 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MYI A 1 3 3 MYI MYI . D 3 OCR A 1 1 1 OCR OCR . E 3 OCR B 1 2 2 OCR OCR . F 4 HOH A 1 1002 1002 HOH HOH . F 4 HOH A 2 1004 1004 HOH HOH . F 4 HOH A 3 1005 1005 HOH HOH . F 4 HOH A 4 1006 1006 HOH HOH . F 4 HOH A 5 1008 1008 HOH HOH . F 4 HOH A 6 1009 1009 HOH HOH . F 4 HOH A 7 1010 1010 HOH HOH . F 4 HOH A 8 1011 1011 HOH HOH . F 4 HOH A 9 1013 1013 HOH HOH . F 4 HOH A 10 1014 1014 HOH HOH . F 4 HOH A 11 1015 1015 HOH HOH . F 4 HOH A 12 1018 1018 HOH HOH . F 4 HOH A 13 1020 1020 HOH HOH . F 4 HOH A 14 1021 1021 HOH HOH . F 4 HOH A 15 1022 1022 HOH HOH . F 4 HOH A 16 1034 1034 HOH HOH . F 4 HOH A 17 1035 1035 HOH HOH . F 4 HOH A 18 1040 1040 HOH HOH . F 4 HOH A 19 1041 1041 HOH HOH . F 4 HOH A 20 1045 1045 HOH HOH . F 4 HOH A 21 1046 1046 HOH HOH . F 4 HOH A 22 1049 1049 HOH HOH . F 4 HOH A 23 1052 1052 HOH HOH . F 4 HOH A 24 1053 1053 HOH HOH . F 4 HOH A 25 1055 1055 HOH HOH . F 4 HOH A 26 1057 1057 HOH HOH . F 4 HOH A 27 1058 1058 HOH HOH . F 4 HOH A 28 1059 1059 HOH HOH . F 4 HOH A 29 1061 1061 HOH HOH . F 4 HOH A 30 1063 1063 HOH HOH . F 4 HOH A 31 1064 1064 HOH HOH . F 4 HOH A 32 1066 1066 HOH HOH . F 4 HOH A 33 1071 1071 HOH HOH . F 4 HOH A 34 1073 1073 HOH HOH . F 4 HOH A 35 1074 1074 HOH HOH . F 4 HOH A 36 1076 1076 HOH HOH . F 4 HOH A 37 1077 1077 HOH HOH . F 4 HOH A 38 1078 1078 HOH HOH . F 4 HOH A 39 1083 1083 HOH HOH . F 4 HOH A 40 1084 1084 HOH HOH . F 4 HOH A 41 1088 1088 HOH HOH . F 4 HOH A 42 1089 1089 HOH HOH . F 4 HOH A 43 1094 1094 HOH HOH . F 4 HOH A 44 1095 1095 HOH HOH . F 4 HOH A 45 1102 1102 HOH HOH . F 4 HOH A 46 1103 1103 HOH HOH . F 4 HOH A 47 1104 1104 HOH HOH . F 4 HOH A 48 1110 1110 HOH HOH . F 4 HOH A 49 1113 1113 HOH HOH . F 4 HOH A 50 1114 1114 HOH HOH . F 4 HOH A 51 1116 1116 HOH HOH . F 4 HOH A 52 1117 1117 HOH HOH . F 4 HOH A 53 1120 1120 HOH HOH . F 4 HOH A 54 1121 1121 HOH HOH . F 4 HOH A 55 1129 1129 HOH HOH . F 4 HOH A 56 1130 1130 HOH HOH . F 4 HOH A 57 1131 1131 HOH HOH . F 4 HOH A 58 1134 1134 HOH HOH . F 4 HOH A 59 1135 1135 HOH HOH . G 4 HOH B 1 1001 1001 HOH HOH . G 4 HOH B 2 1003 1003 HOH HOH . G 4 HOH B 3 1007 1007 HOH HOH . G 4 HOH B 4 1012 1012 HOH HOH . G 4 HOH B 5 1016 1016 HOH HOH . G 4 HOH B 6 1017 1017 HOH HOH . G 4 HOH B 7 1019 1019 HOH HOH . G 4 HOH B 8 1023 1023 HOH HOH . G 4 HOH B 9 1024 1024 HOH HOH . G 4 HOH B 10 1025 1025 HOH HOH . G 4 HOH B 11 1026 1026 HOH HOH . G 4 HOH B 12 1027 1027 HOH HOH . G 4 HOH B 13 1028 1028 HOH HOH . G 4 HOH B 14 1029 1029 HOH HOH . G 4 HOH B 15 1030 1030 HOH HOH . G 4 HOH B 16 1031 1031 HOH HOH . G 4 HOH B 17 1032 1032 HOH HOH . G 4 HOH B 18 1036 1036 HOH HOH . G 4 HOH B 19 1037 1037 HOH HOH . G 4 HOH B 20 1038 1038 HOH HOH . G 4 HOH B 21 1039 1039 HOH HOH . G 4 HOH B 22 1042 1042 HOH HOH . G 4 HOH B 23 1043 1043 HOH HOH . G 4 HOH B 24 1044 1044 HOH HOH . G 4 HOH B 25 1047 1047 HOH HOH . G 4 HOH B 26 1048 1048 HOH HOH . G 4 HOH B 27 1050 1050 HOH HOH . G 4 HOH B 28 1051 1051 HOH HOH . G 4 HOH B 29 1054 1054 HOH HOH . G 4 HOH B 30 1056 1056 HOH HOH . G 4 HOH B 31 1060 1060 HOH HOH . G 4 HOH B 32 1062 1062 HOH HOH . G 4 HOH B 33 1065 1065 HOH HOH . G 4 HOH B 34 1067 1067 HOH HOH . G 4 HOH B 35 1068 1068 HOH HOH . G 4 HOH B 36 1069 1069 HOH HOH . G 4 HOH B 37 1070 1070 HOH HOH . G 4 HOH B 38 1072 1072 HOH HOH . G 4 HOH B 39 1075 1075 HOH HOH . G 4 HOH B 40 1079 1079 HOH HOH . G 4 HOH B 41 1080 1080 HOH HOH . G 4 HOH B 42 1081 1081 HOH HOH . G 4 HOH B 43 1082 1082 HOH HOH . G 4 HOH B 44 1085 1085 HOH HOH . G 4 HOH B 45 1092 1092 HOH HOH . G 4 HOH B 46 1093 1093 HOH HOH . G 4 HOH B 47 1096 1096 HOH HOH . G 4 HOH B 48 1097 1097 HOH HOH . G 4 HOH B 49 1098 1098 HOH HOH . G 4 HOH B 50 1099 1099 HOH HOH . G 4 HOH B 51 1100 1100 HOH HOH . G 4 HOH B 52 1105 1105 HOH HOH . G 4 HOH B 53 1106 1106 HOH HOH . G 4 HOH B 54 1109 1109 HOH HOH . G 4 HOH B 55 1118 1118 HOH HOH . G 4 HOH B 56 1119 1119 HOH HOH . G 4 HOH B 57 1123 1123 HOH HOH . G 4 HOH B 58 1126 1126 HOH HOH . G 4 HOH B 59 1132 1132 HOH HOH . G 4 HOH B 60 1133 1133 HOH HOH . G 4 HOH B 61 1137 1137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OCR . . . E 3 39.809 35.693 43.795 1 73 ? C1 OCR 2 B 1 HETATM 2 C C2 OCR . . . E 3 39.427 36.494 42.553 1 73.63 ? C2 OCR 2 B 1 HETATM 3 C C3 OCR . . . E 3 39.711 37.979 42.751 1 74.29 ? C3 OCR 2 B 1 HETATM 4 C C4 OCR . . . E 3 38.448 38.744 43.185 1 74.8 ? C4 OCR 2 B 1 HETATM 5 C C5 OCR . . . E 3 37.967 39.553 42.135 1 75.21 ? C5 OCR 2 B 1 HETATM 6 C C6 OCR . . . E 3 36.489 39.249 41.76 1 75.91 ? C6 OCR 2 B 1 HETATM 7 O O7 OCR . . . E 3 35.651 39.02 42.642 1 76.3 ? O7 OCR 2 B 1 HETATM 8 C C8 OCR . . . E 3 36.021 39.238 40.284 1 73.25 ? C8 OCR 2 B 1 HETATM 9 C C9 OCR . . . E 3 37.117 38.951 39.213 1 70 ? C9 OCR 2 B 1 HETATM 10 C C11 OCR . . . E 3 36.439 38.972 37.85 1 73.2 ? C11 OCR 2 B 1 HETATM 11 C C12 OCR . . . E 3 35.808 37.961 37.257 1 70.88 ? C12 OCR 2 B 1 HETATM 12 C C13 OCR . . . E 3 35.582 36.523 37.747 1 71.99 ? C13 OCR 2 B 1 HETATM 13 C C14 OCR . . . E 3 35.532 35.547 36.584 1 73.86 ? C14 OCR 2 B 1 HETATM 14 C C15 OCR . . . E 3 34.492 34.754 36.343 1 74.61 ? C15 OCR 2 B 1 HETATM 15 C C16 OCR . . . E 3 33.254 34.75 37.218 1 77.46 ? C16 OCR 2 B 1 HETATM 16 C C17 OCR . . . E 3 32.811 33.331 37.571 1 78.62 ? C17 OCR 2 B 1 HETATM 17 C C18 OCR . . . E 3 33.397 32.58 38.515 1 78.99 ? C18 OCR 2 B 1 HETATM 18 C C19 OCR . . . E 3 34.589 33.03 39.354 1 80.01 ? C19 OCR 2 B 1 HETATM 19 C C20 OCR . . . E 3 34.195 33.813 40.609 1 82.43 ? C20 OCR 2 B 1 HETATM 20 C C21 OCR . . . E 3 35.043 33.369 41.802 1 83.4 ? C21 OCR 2 B 1 HETATM 21 C C22 OCR . . . E 3 36.23 34.318 42.038 1 84.53 ? C22 OCR 2 B 1 HETATM 22 O O23 OCR . . . E 3 37.369 33.786 42.176 1 84.42 ? O23 OCR 2 B 1 HETATM 23 O O24 OCR . . . E 3 35.984 35.553 42.087 1 85.05 ? O24 OCR 2 B 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 23 #