data_3AE0 # _model_server_result.job_id 3IZzo3LTGrnOPL8Aie7rRg _model_server_result.datetime_utc '2024-11-02 13:41:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ae0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1002}' # _entry.id 3AE0 # _exptl.entry_id 3AE0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 466.509 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'phosphonooxy-[(10E)-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraenyl]sulfanyl-phosphinic acid' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3AE0 _cell.length_a 80.118 _cell.length_b 80.118 _cell.length_c 183.617 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AE0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,M 1 1 B,H,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 54 A ASP 48 1_555 G MG MG . A MG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc2 A OD2 ASP 58 A ASP 52 1_555 G MG MG . A MG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? metalc ? metalc3 A OD1 ASN 174 A ASN 168 1_555 E MG MG . A MG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc4 A OD1 ASP 178 A ASP 172 1_555 E MG MG . A MG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc5 M O HOH . A HOH 501 1_555 E MG MG . A MG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc6 M O HOH . A HOH 529 1_555 E MG MG . A MG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.782 ? metalc ? metalc7 M O HOH . A HOH 535 1_555 G MG MG . A MG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? metalc ? metalc8 M O HOH . A HOH 560 1_555 F MG MG . A MG 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc9 M O HOH . A HOH 565 1_555 E MG MG . A MG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc10 C O2A GGS . A GGS 1001 1_555 F MG MG . A MG 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc11 D O2A GGS . A GGS 1002 1_555 F MG MG . A MG 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc12 D O1B GGS . A GGS 1002 1_555 F MG MG . A MG 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc13 D O3B GGS . A GGS 1002 1_555 G MG MG . A MG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? metalc ? metalc14 B OD1 ASP 54 B ASP 48 1_555 L MG MG . B MG 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc15 B OD1 ASP 58 B ASP 52 1_555 L MG MG . B MG 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc16 B OD1 ASN 174 B ASN 168 1_555 J MG MG . B MG 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc17 B OD2 ASP 178 B ASP 172 1_555 J MG MG . B MG 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc18 N O HOH . B HOH 504 1_555 J MG MG . B MG 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc19 N O HOH . B HOH 566 1_555 J MG MG . B MG 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc20 N O HOH . B HOH 567 1_555 J MG MG . B MG 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc21 H O2B GGS . B GGS 1003 1_555 K MG MG . B MG 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc22 H O2A GGS . B GGS 1003 1_555 K MG MG . B MG 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc23 I O1B GGS . B GGS 1004 1_555 K MG MG . B MG 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc24 I O2A GGS . B GGS 1004 1_555 K MG MG . B MG 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc25 I O3A GGS . B GGS 1004 1_555 K MG MG . B MG 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.991 ? metalc ? metalc26 I O3B GGS . B GGS 1004 1_555 L MG MG . B MG 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? # _chem_comp.formula 'C20 H36 O6 P2 S' _chem_comp.formula_weight 466.509 _chem_comp.id GGS _chem_comp.mon_nstd_flag . _chem_comp.name 'phosphonooxy-[(10E)-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraenyl]sulfanyl-phosphinic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 S1 GGS sing 83 n n C1 C2 GGS sing 84 n n S1 PA GGS sing 85 n n C2 C3 GGS doub 86 n n C3 C4 GGS sing 87 n n C3 C5 GGS sing 88 z n C5 C6 GGS sing 89 n n C6 C7 GGS sing 90 n n C7 C8 GGS doub 91 n n C8 C9 GGS sing 92 n n C8 C10 GGS sing 93 n n C9 C11 GGS sing 94 n n PA O1A GGS doub 95 n n PA O2A GGS sing 96 n n PA O3A GGS sing 97 n n PB O1B GGS doub 98 n n PB O2B GGS sing 99 n n PB O3A GGS sing 100 n n PB O3B GGS sing 101 e n C11 C12 GGS sing 102 n n C12 C13 GGS doub 103 n n C13 C14 GGS sing 104 n n C13 C15 GGS sing 105 n n C15 C16 GGS sing 106 n n C16 C17 GGS sing 107 n n C17 C18 GGS doub 108 n n C18 C19 GGS sing 109 n n C18 C20 GGS sing 110 n n C1 H1 GGS sing 111 n n C1 H1A GGS sing 112 n n C2 H2 GGS sing 113 n n C4 H4 GGS sing 114 n n C4 H4A GGS sing 115 n n C4 H4B GGS sing 116 n n C5 H5 GGS sing 117 n n C5 H5A GGS sing 118 n n C6 H6 GGS sing 119 n n C6 H6A GGS sing 120 n n C7 H7 GGS sing 121 e n C9 H9 GGS sing 122 n n C9 H9A GGS sing 123 n n C10 H10 GGS sing 124 n n C10 H10A GGS sing 125 n n C10 H10B GGS sing 126 n n C11 H11 GGS sing 127 n n C11 H11A GGS sing 128 n n C12 H12 GGS sing 129 n n C14 H14 GGS sing 130 n n C14 H14A GGS sing 131 n n C14 H14B GGS sing 132 n n C15 H15 GGS sing 133 n n C15 H15A GGS sing 134 n n C16 H16 GGS sing 135 n n C16 H16A GGS sing 136 n n C17 H17 GGS sing 137 n n C19 H19 GGS sing 138 n n C19 H19A GGS sing 139 n n C19 H19B GGS sing 140 n n C20 H20 GGS sing 141 n n C20 H20A GGS sing 142 n n C20 H20B GGS sing 143 n n O2A HO2A GGS sing 144 n n O2B HO2B GGS sing 145 n n O3B HO3B GGS sing 146 n n # _atom_sites.entry_id 3AE0 _atom_sites.fract_transf_matrix[1][1] 0.012482 _atom_sites.fract_transf_matrix[1][2] 0.007206 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014412 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005446 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GGS A 1 1001 1001 GGS GGS . D 2 GGS A 1 1002 1002 GGS GGS . E 3 MG A 1 1005 1005 MG MG . F 3 MG A 1 1006 1006 MG MG . G 3 MG A 1 1007 1007 MG MG . H 2 GGS B 1 1003 1003 GGS GGS . I 2 GGS B 1 1004 1004 GGS GGS . J 3 MG B 1 1008 1008 MG MG . K 3 MG B 1 1009 1009 MG MG . L 3 MG B 1 1010 1010 MG MG . M 4 HOH A 1 501 501 HOH HOH . M 4 HOH A 2 505 505 HOH HOH . M 4 HOH A 3 506 506 HOH HOH . M 4 HOH A 4 507 507 HOH HOH . M 4 HOH A 5 511 511 HOH HOH . M 4 HOH A 6 514 514 HOH HOH . M 4 HOH A 7 515 515 HOH HOH . M 4 HOH A 8 516 516 HOH HOH . M 4 HOH A 9 519 519 HOH HOH . M 4 HOH A 10 522 522 HOH HOH . M 4 HOH A 11 527 527 HOH HOH . M 4 HOH A 12 528 528 HOH HOH . M 4 HOH A 13 529 529 HOH HOH . M 4 HOH A 14 533 533 HOH HOH . M 4 HOH A 15 535 535 HOH HOH . M 4 HOH A 16 536 536 HOH HOH . M 4 HOH A 17 538 538 HOH HOH . M 4 HOH A 18 540 540 HOH HOH . M 4 HOH A 19 541 541 HOH HOH . M 4 HOH A 20 545 545 HOH HOH . M 4 HOH A 21 547 547 HOH HOH . M 4 HOH A 22 550 550 HOH HOH . M 4 HOH A 23 552 552 HOH HOH . M 4 HOH A 24 554 554 HOH HOH . M 4 HOH A 25 556 556 HOH HOH . M 4 HOH A 26 557 557 HOH HOH . M 4 HOH A 27 560 560 HOH HOH . M 4 HOH A 28 561 561 HOH HOH . M 4 HOH A 29 562 562 HOH HOH . M 4 HOH A 30 565 565 HOH HOH . N 4 HOH B 1 502 502 HOH HOH . N 4 HOH B 2 503 503 HOH HOH . N 4 HOH B 3 504 504 HOH HOH . N 4 HOH B 4 508 508 HOH HOH . N 4 HOH B 5 509 509 HOH HOH . N 4 HOH B 6 510 510 HOH HOH . N 4 HOH B 7 512 512 HOH HOH . N 4 HOH B 8 513 513 HOH HOH . N 4 HOH B 9 517 517 HOH HOH . N 4 HOH B 10 518 518 HOH HOH . N 4 HOH B 11 520 520 HOH HOH . N 4 HOH B 12 521 521 HOH HOH . N 4 HOH B 13 523 523 HOH HOH . N 4 HOH B 14 524 524 HOH HOH . N 4 HOH B 15 525 525 HOH HOH . N 4 HOH B 16 526 526 HOH HOH . N 4 HOH B 17 530 530 HOH HOH . N 4 HOH B 18 531 531 HOH HOH . N 4 HOH B 19 532 532 HOH HOH . N 4 HOH B 20 534 534 HOH HOH . N 4 HOH B 21 537 537 HOH HOH . N 4 HOH B 22 539 539 HOH HOH . N 4 HOH B 23 542 542 HOH HOH . N 4 HOH B 24 543 543 HOH HOH . N 4 HOH B 25 544 544 HOH HOH . N 4 HOH B 26 546 546 HOH HOH . N 4 HOH B 27 548 548 HOH HOH . N 4 HOH B 28 549 549 HOH HOH . N 4 HOH B 29 551 551 HOH HOH . N 4 HOH B 30 553 553 HOH HOH . N 4 HOH B 31 555 555 HOH HOH . N 4 HOH B 32 558 558 HOH HOH . N 4 HOH B 33 559 559 HOH HOH . N 4 HOH B 34 563 563 HOH HOH . N 4 HOH B 35 564 564 HOH HOH . N 4 HOH B 36 566 566 HOH HOH . N 4 HOH B 37 567 567 HOH HOH . N 4 HOH B 38 568 568 HOH HOH . N 4 HOH B 39 569 569 HOH HOH . N 4 HOH B 40 570 570 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GGS . . . D 2 26.225 6.584 23.931 1 69.16 ? C1 GGS 1002 A 1 HETATM 2 S S1 GGS . . . D 2 24.69 6.756 24.553 1 70.08 ? S1 GGS 1002 A 1 HETATM 3 C C2 GGS . . . D 2 27.324 7.582 23.984 1 67.8 ? C2 GGS 1002 A 1 HETATM 4 C C3 GGS . . . D 2 27.412 8.82 24.494 1 65.33 ? C3 GGS 1002 A 1 HETATM 5 C C4 GGS . . . D 2 26.28 9.524 25.129 1 65.59 ? C4 GGS 1002 A 1 HETATM 6 C C5 GGS . . . D 2 28.728 9.57 24.419 1 61.86 ? C5 GGS 1002 A 1 HETATM 7 C C6 GGS . . . D 2 28.797 10.41 23.163 1 58.16 ? C6 GGS 1002 A 1 HETATM 8 C C7 GGS . . . D 2 27.526 10.572 22.435 1 60.38 ? C7 GGS 1002 A 1 HETATM 9 C C8 GGS . . . D 2 27.363 11.252 21.308 1 58.95 ? C8 GGS 1002 A 1 HETATM 10 C C9 GGS . . . D 2 26.976 12.708 21.375 1 58.57 ? C9 GGS 1002 A 1 HETATM 11 P PA GGS . . . D 2 23.406 5.198 24.129 1 67.55 ? PA GGS 1002 A 1 HETATM 12 P PB GGS . . . D 2 24.969 3.86 22.12 1 67.86 ? PB GGS 1002 A 1 HETATM 13 C C10 GGS . . . D 2 27.556 10.501 20.057 1 60.04 ? C10 GGS 1002 A 1 HETATM 14 C C11 GGS . . . D 2 26.513 13.366 20.094 1 60.38 ? C11 GGS 1002 A 1 HETATM 15 C C12 GGS . . . D 2 25.562 14.502 20.169 1 60.08 ? C12 GGS 1002 A 1 HETATM 16 C C13 GGS . . . D 2 25.094 15.187 19.123 1 58.62 ? C13 GGS 1002 A 1 HETATM 17 C C14 GGS . . . D 2 26.076 15.84 18.241 1 61.77 ? C14 GGS 1002 A 1 HETATM 18 C C15 GGS . . . D 2 23.615 15.327 18.831 1 56.81 ? C15 GGS 1002 A 1 HETATM 19 C C16 GGS . . . D 2 23.28 16.461 17.885 1 54.09 ? C16 GGS 1002 A 1 HETATM 20 C C17 GGS . . . D 2 22.159 17.344 18.276 1 55.83 ? C17 GGS 1002 A 1 HETATM 21 C C18 GGS . . . D 2 21.657 18.397 17.624 1 54.27 ? C18 GGS 1002 A 1 HETATM 22 C C19 GGS . . . D 2 22.48 19.621 17.317 1 54.49 ? C19 GGS 1002 A 1 HETATM 23 O O1A GGS . . . D 2 22.819 4.706 25.428 1 68 ? O1A GGS 1002 A 1 HETATM 24 O O1B GGS . . . D 2 24.333 4.891 21.213 1 66.78 ? O1B GGS 1002 A 1 HETATM 25 C C20 GGS . . . D 2 20.238 18.394 17.226 1 53.9 ? C20 GGS 1002 A 1 HETATM 26 O O2A GGS . . . D 2 22.391 5.568 23.077 1 66.89 ? O2A GGS 1002 A 1 HETATM 27 O O2B GGS . . . D 2 24.64 2.464 21.645 1 67.9 ? O2B GGS 1002 A 1 HETATM 28 O O3A GGS . . . D 2 24.21 3.936 23.54 1 67.98 ? O3A GGS 1002 A 1 HETATM 29 O O3B GGS . . . D 2 26.398 4.109 22.558 1 65.38 ? O3B GGS 1002 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #