data_3AE1 # _model_server_result.job_id 1GW2veHlV5ZfYFqCQbVCIw _model_server_result.datetime_utc '2024-11-19 07:13:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ae1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":700}' # _entry.id 3AE1 # _exptl.entry_id 3AE1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3AE1 _cell.length_a 71.465 _cell.length_b 84.065 _cell.length_c 294.622 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AE1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NE2 HIS 57 A HIS 57 1_555 E C8M FAD . A FAD 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? metalc ? metalc1 B SG CYS 65 B CYS 65 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? metalc ? metalc2 B SG CYS 70 B CYS 70 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc3 B SG CYS 73 B CYS 73 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc4 B SG CYS 85 B CYS 85 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc5 B SG CYS 158 B CYS 158 1_555 H FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc6 B SG CYS 161 B CYS 161 1_555 H FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc7 B SG CYS 164 B CYS 164 1_555 H FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc8 B SG CYS 168 B CYS 168 1_555 I FE4 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc9 B SG CYS 215 B CYS 215 1_555 I FE3 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc10 B SG CYS 221 B CYS 221 1_555 I FE1 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc11 B SG CYS 225 B CYS 225 1_555 H FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc12 C NE2 HIS 98 C HIS 101 1_555 J FE HEM . C HEM 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc13 J FE HEM . C HEM 1305 1_555 D NE2 HIS 46 D HIS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 208 n n PA O2A FAD sing 209 n n PA O5B FAD sing 210 n n PA O3P FAD sing 211 n n O2A HOA2 FAD sing 212 n n O5B C5B FAD sing 213 n n C5B C4B FAD sing 214 n n C5B H51A FAD sing 215 n n C5B H52A FAD sing 216 n n C4B O4B FAD sing 217 n n C4B C3B FAD sing 218 n n C4B H4B FAD sing 219 n n O4B C1B FAD sing 220 n n C3B O3B FAD sing 221 n n C3B C2B FAD sing 222 n n C3B H3B FAD sing 223 n n O3B HO3A FAD sing 224 n n C2B O2B FAD sing 225 n n C2B C1B FAD sing 226 n n C2B H2B FAD sing 227 n n O2B HO2A FAD sing 228 n n C1B N9A FAD sing 229 n n C1B H1B FAD sing 230 n n N9A C8A FAD sing 231 n y N9A C4A FAD sing 232 n y C8A N7A FAD doub 233 n y C8A H8A FAD sing 234 n n N7A C5A FAD sing 235 n y C5A C6A FAD sing 236 n y C5A C4A FAD doub 237 n y C6A N6A FAD sing 238 n n C6A N1A FAD doub 239 n y N6A H61A FAD sing 240 n n N6A H62A FAD sing 241 n n N1A C2A FAD sing 242 n y C2A N3A FAD doub 243 n y C2A H2A FAD sing 244 n n N3A C4A FAD sing 245 n y N1 C2 FAD sing 246 n n N1 C10 FAD doub 247 n n C2 O2 FAD doub 248 n n C2 N3 FAD sing 249 n n N3 C4 FAD sing 250 n n N3 HN3 FAD sing 251 n n C4 O4 FAD doub 252 n n C4 C4X FAD sing 253 n n C4X N5 FAD doub 254 n n C4X C10 FAD sing 255 n n N5 C5X FAD sing 256 n n C5X C6 FAD doub 257 n y C5X C9A FAD sing 258 n y C6 C7 FAD sing 259 n y C6 H6 FAD sing 260 n n C7 C7M FAD sing 261 n n C7 C8 FAD doub 262 n y C7M HM71 FAD sing 263 n n C7M HM72 FAD sing 264 n n C7M HM73 FAD sing 265 n n C8 C8M FAD sing 266 n n C8 C9 FAD sing 267 n y C8M HM81 FAD sing 268 n n C8M HM82 FAD sing 269 n n C8M HM83 FAD sing 270 n n C9 C9A FAD doub 271 n y C9 H9 FAD sing 272 n n C9A N10 FAD sing 273 n n N10 C10 FAD sing 274 n n N10 C1' FAD sing 275 n n C1' C2' FAD sing 276 n n C1' "H1'1" FAD sing 277 n n C1' "H1'2" FAD sing 278 n n C2' O2' FAD sing 279 n n C2' C3' FAD sing 280 n n C2' H2' FAD sing 281 n n O2' HO2' FAD sing 282 n n C3' O3' FAD sing 283 n n C3' C4' FAD sing 284 n n C3' H3' FAD sing 285 n n O3' HO3' FAD sing 286 n n C4' O4' FAD sing 287 n n C4' C5' FAD sing 288 n n C4' H4' FAD sing 289 n n O4' HO4' FAD sing 290 n n C5' O5' FAD sing 291 n n C5' "H5'1" FAD sing 292 n n C5' "H5'2" FAD sing 293 n n O5' P FAD sing 294 n n P O1P FAD doub 295 n n P O2P FAD sing 296 n n P O3P FAD sing 297 n n O2P HOP2 FAD sing 298 n n # _atom_sites.entry_id 3AE1 _atom_sites.fract_transf_matrix[1][1] 0.013993 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011896 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003394 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 FAD A 1 700 700 FAD FAD . F 6 MLI A 1 701 701 MLI MLI . G 7 FES B 1 302 302 FES FES . H 8 SF4 B 1 303 303 SF4 SF4 . I 9 F3S B 1 304 304 F3S F3S . J 10 HEM C 1 1305 1305 HEM HEM . K 11 TFZ C 1 1201 1201 TFZ TFZ . L 12 EPH D 1 1306 1306 EPH EPH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . E 5 -12.239 16.71 -22.652 1 62.13 ? PA FAD 700 A 1 HETATM 2 O O1A FAD . . . E 5 -13.656 16.482 -23.103 1 62.29 ? O1A FAD 700 A 1 HETATM 3 O O2A FAD . . . E 5 -11.334 15.586 -23.093 1 62.6 ? O2A FAD 700 A 1 HETATM 4 O O5B FAD . . . E 5 -11.718 18.099 -23.252 1 62.61 ? O5B FAD 700 A 1 HETATM 5 C C5B FAD . . . E 5 -10.376 18.493 -23.084 1 63.07 ? C5B FAD 700 A 1 HETATM 6 C C4B FAD . . . E 5 -10.269 19.972 -23.43 1 63.28 ? C4B FAD 700 A 1 HETATM 7 O O4B FAD . . . E 5 -9.087 20.53 -22.89 1 63.48 ? O4B FAD 700 A 1 HETATM 8 C C3B FAD . . . E 5 -10.235 20.186 -24.931 1 63.26 ? C3B FAD 700 A 1 HETATM 9 O O3B FAD . . . E 5 -11.242 21.122 -25.231 1 63.03 ? O3B FAD 700 A 1 HETATM 10 C C2B FAD . . . E 5 -8.863 20.765 -25.219 1 63.47 ? C2B FAD 700 A 1 HETATM 11 O O2B FAD . . . E 5 -8.918 21.814 -26.153 1 64.02 ? O2B FAD 700 A 1 HETATM 12 C C1B FAD . . . E 5 -8.395 21.28 -23.87 1 63.43 ? C1B FAD 700 A 1 HETATM 13 N N9A FAD . . . E 5 -6.932 21.159 -23.706 1 63.09 ? N9A FAD 700 A 1 HETATM 14 C C8A FAD . . . E 5 -6.214 20.031 -23.401 1 63.02 ? C8A FAD 700 A 1 HETATM 15 N N7A FAD . . . E 5 -4.904 20.36 -23.336 1 62.92 ? N7A FAD 700 A 1 HETATM 16 C C5A FAD . . . E 5 -4.775 21.682 -23.593 1 62.81 ? C5A FAD 700 A 1 HETATM 17 C C6A FAD . . . E 5 -3.669 22.528 -23.657 1 62.74 ? C6A FAD 700 A 1 HETATM 18 N N6A FAD . . . E 5 -2.46 22.017 -23.869 1 62.31 ? N6A FAD 700 A 1 HETATM 19 N N1A FAD . . . E 5 -3.873 23.863 -23.948 1 62.97 ? N1A FAD 700 A 1 HETATM 20 C C2A FAD . . . E 5 -5.145 24.358 -24.175 1 62.73 ? C2A FAD 700 A 1 HETATM 21 N N3A FAD . . . E 5 -6.228 23.508 -24.111 1 62.43 ? N3A FAD 700 A 1 HETATM 22 C C4A FAD . . . E 5 -6.047 22.195 -23.825 1 62.69 ? C4A FAD 700 A 1 HETATM 23 N N1 FAD . . . E 5 -18.364 9.382 -19.621 1 68.85 ? N1 FAD 700 A 1 HETATM 24 C C2 FAD . . . E 5 -19.718 9.308 -19.379 1 68.68 ? C2 FAD 700 A 1 HETATM 25 O O2 FAD . . . E 5 -20.16 9.696 -18.299 1 68.46 ? O2 FAD 700 A 1 HETATM 26 N N3 FAD . . . E 5 -20.559 8.81 -20.355 1 68.54 ? N3 FAD 700 A 1 HETATM 27 C C4 FAD . . . E 5 -20.04 8.387 -21.564 1 68.52 ? C4 FAD 700 A 1 HETATM 28 O O4 FAD . . . E 5 -20.804 7.948 -22.419 1 68.77 ? O4 FAD 700 A 1 HETATM 29 C C4X FAD . . . E 5 -18.667 8.458 -21.809 1 68.49 ? C4X FAD 700 A 1 HETATM 30 N N5 FAD . . . E 5 -18.123 8.031 -23.01 1 68.71 ? N5 FAD 700 A 1 HETATM 31 C C5X FAD . . . E 5 -16.762 8.108 -23.24 1 68.6 ? C5X FAD 700 A 1 HETATM 32 C C6 FAD . . . E 5 -16.223 7.684 -24.455 1 68.86 ? C6 FAD 700 A 1 HETATM 33 C C7 FAD . . . E 5 -14.847 7.756 -24.686 1 69.06 ? C7 FAD 700 A 1 HETATM 34 C C7M FAD . . . E 5 -14.297 7.287 -26.006 1 69.03 ? C7M FAD 700 A 1 HETATM 35 C C8 FAD . . . E 5 -14.013 8.265 -23.682 1 68.94 ? C8 FAD 700 A 1 HETATM 36 C C8M FAD . . . E 5 -12.526 8.362 -23.849 1 69.14 ? C8M FAD 700 A 1 HETATM 37 C C9 FAD . . . E 5 -14.555 8.689 -22.475 1 68.63 ? C9 FAD 700 A 1 HETATM 38 C C9A FAD . . . E 5 -15.926 8.613 -22.249 1 68.38 ? C9A FAD 700 A 1 HETATM 39 N N10 FAD . . . E 5 -16.46 9.027 -21.044 1 68.25 ? N10 FAD 700 A 1 HETATM 40 C C10 FAD . . . E 5 -17.827 8.954 -20.822 1 68.46 ? C10 FAD 700 A 1 HETATM 41 C C1' FAD . . . E 5 -15.558 9.597 -19.984 1 67.79 ? C1' FAD 700 A 1 HETATM 42 C C2' FAD . . . E 5 -15.714 11.129 -20.028 1 67.03 ? C2' FAD 700 A 1 HETATM 43 O O2' FAD . . . E 5 -16.648 11.514 -21.02 1 67.27 ? O2' FAD 700 A 1 HETATM 44 C C3' FAD . . . E 5 -14.421 11.89 -20.29 1 66.15 ? C3' FAD 700 A 1 HETATM 45 O O3' FAD . . . E 5 -13.644 11.888 -19.115 1 66.34 ? O3' FAD 700 A 1 HETATM 46 C C4' FAD . . . E 5 -14.771 13.321 -20.695 1 65.21 ? C4' FAD 700 A 1 HETATM 47 O O4' FAD . . . E 5 -15.035 13.374 -22.08 1 65.22 ? O4' FAD 700 A 1 HETATM 48 C C5' FAD . . . E 5 -13.687 14.33 -20.351 1 64.34 ? C5' FAD 700 A 1 HETATM 49 O O5' FAD . . . E 5 -14.27 15.604 -20.45 1 63.37 ? O5' FAD 700 A 1 HETATM 50 P P FAD . . . E 5 -13.44 16.927 -20.077 1 63.13 ? P FAD 700 A 1 HETATM 51 O O1P FAD . . . E 5 -14.295 18.145 -20.345 1 63 ? O1P FAD 700 A 1 HETATM 52 O O2P FAD . . . E 5 -12.983 16.883 -18.637 1 62.83 ? O2P FAD 700 A 1 HETATM 53 O O3P FAD . . . E 5 -12.159 16.917 -21.057 1 62.64 ? O3P FAD 700 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 366 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 53 #