data_3AE2 # _model_server_result.job_id qTsgzIgDLZbB9PY3u2OmjA _model_server_result.datetime_utc '2024-11-24 07:03:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ae2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":700}' # _entry.id 3AE2 # _exptl.entry_id 3AE2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3AE2 _cell.length_a 71.855 _cell.length_b 84.201 _cell.length_c 294.615 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AE2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NE2 HIS 57 A HIS 57 1_555 E C8M FAD . A FAD 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc1 B SG CYS 65 B CYS 65 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc2 B SG CYS 70 B CYS 70 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc3 B SG CYS 73 B CYS 73 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc4 B SG CYS 85 B CYS 85 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc5 B SG CYS 158 B CYS 158 1_555 H FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc6 B SG CYS 161 B CYS 161 1_555 H FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc7 B SG CYS 164 B CYS 164 1_555 H FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc8 B SG CYS 168 B CYS 168 1_555 I FE4 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc9 B SG CYS 215 B CYS 215 1_555 I FE1 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc10 B SG CYS 221 B CYS 221 1_555 I FE3 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc11 B SG CYS 225 B CYS 225 1_555 H FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc12 C NE2 HIS 98 C HIS 101 1_555 J FE HEM . C HEM 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc13 J FE HEM . C HEM 1305 1_555 D NE2 HIS 46 D HIS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 208 n n PA O2A FAD sing 209 n n PA O5B FAD sing 210 n n PA O3P FAD sing 211 n n O2A HOA2 FAD sing 212 n n O5B C5B FAD sing 213 n n C5B C4B FAD sing 214 n n C5B H51A FAD sing 215 n n C5B H52A FAD sing 216 n n C4B O4B FAD sing 217 n n C4B C3B FAD sing 218 n n C4B H4B FAD sing 219 n n O4B C1B FAD sing 220 n n C3B O3B FAD sing 221 n n C3B C2B FAD sing 222 n n C3B H3B FAD sing 223 n n O3B HO3A FAD sing 224 n n C2B O2B FAD sing 225 n n C2B C1B FAD sing 226 n n C2B H2B FAD sing 227 n n O2B HO2A FAD sing 228 n n C1B N9A FAD sing 229 n n C1B H1B FAD sing 230 n n N9A C8A FAD sing 231 n y N9A C4A FAD sing 232 n y C8A N7A FAD doub 233 n y C8A H8A FAD sing 234 n n N7A C5A FAD sing 235 n y C5A C6A FAD sing 236 n y C5A C4A FAD doub 237 n y C6A N6A FAD sing 238 n n C6A N1A FAD doub 239 n y N6A H61A FAD sing 240 n n N6A H62A FAD sing 241 n n N1A C2A FAD sing 242 n y C2A N3A FAD doub 243 n y C2A H2A FAD sing 244 n n N3A C4A FAD sing 245 n y N1 C2 FAD sing 246 n n N1 C10 FAD doub 247 n n C2 O2 FAD doub 248 n n C2 N3 FAD sing 249 n n N3 C4 FAD sing 250 n n N3 HN3 FAD sing 251 n n C4 O4 FAD doub 252 n n C4 C4X FAD sing 253 n n C4X N5 FAD doub 254 n n C4X C10 FAD sing 255 n n N5 C5X FAD sing 256 n n C5X C6 FAD doub 257 n y C5X C9A FAD sing 258 n y C6 C7 FAD sing 259 n y C6 H6 FAD sing 260 n n C7 C7M FAD sing 261 n n C7 C8 FAD doub 262 n y C7M HM71 FAD sing 263 n n C7M HM72 FAD sing 264 n n C7M HM73 FAD sing 265 n n C8 C8M FAD sing 266 n n C8 C9 FAD sing 267 n y C8M HM81 FAD sing 268 n n C8M HM82 FAD sing 269 n n C8M HM83 FAD sing 270 n n C9 C9A FAD doub 271 n y C9 H9 FAD sing 272 n n C9A N10 FAD sing 273 n n N10 C10 FAD sing 274 n n N10 C1' FAD sing 275 n n C1' C2' FAD sing 276 n n C1' "H1'1" FAD sing 277 n n C1' "H1'2" FAD sing 278 n n C2' O2' FAD sing 279 n n C2' C3' FAD sing 280 n n C2' H2' FAD sing 281 n n O2' HO2' FAD sing 282 n n C3' O3' FAD sing 283 n n C3' C4' FAD sing 284 n n C3' H3' FAD sing 285 n n O3' HO3' FAD sing 286 n n C4' O4' FAD sing 287 n n C4' C5' FAD sing 288 n n C4' H4' FAD sing 289 n n O4' HO4' FAD sing 290 n n C5' O5' FAD sing 291 n n C5' "H5'1" FAD sing 292 n n C5' "H5'2" FAD sing 293 n n O5' P FAD sing 294 n n P O1P FAD doub 295 n n P O2P FAD sing 296 n n P O3P FAD sing 297 n n O2P HOP2 FAD sing 298 n n # _atom_sites.entry_id 3AE2 _atom_sites.fract_transf_matrix[1][1] 0.013917 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011876 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003394 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 FAD A 1 700 700 FAD FAD . F 6 MLI A 1 701 701 MLI MLI . G 7 FES B 1 302 302 FES FES . H 8 SF4 B 1 303 303 SF4 SF4 . I 9 F3S B 1 304 304 F3S F3S . J 10 HEM C 1 1305 1305 HEM HEM . K 11 SLI C 1 1201 1201 SLI SLI . L 12 EPH D 1 1306 1306 EPH EPH . M 13 HOH B 1 1202 1202 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . E 5 23.314 -16.535 22.484 1 51.33 ? PA FAD 700 A 1 HETATM 2 O O1A FAD . . . E 5 24.305 -15.404 22.42 1 53.28 ? O1A FAD 700 A 1 HETATM 3 O O2A FAD . . . E 5 22.03 -16.022 23.06 1 52.35 ? O2A FAD 700 A 1 HETATM 4 O O5B FAD . . . E 5 23.932 -17.681 23.41 1 52.45 ? O5B FAD 700 A 1 HETATM 5 C C5B FAD . . . E 5 25.147 -18.298 23.047 1 54 ? C5B FAD 700 A 1 HETATM 6 C C4B FAD . . . E 5 25.07 -19.797 23.335 1 54.62 ? C4B FAD 700 A 1 HETATM 7 O O4B FAD . . . E 5 26.189 -20.476 22.797 1 55.19 ? O4B FAD 700 A 1 HETATM 8 C C3B FAD . . . E 5 25.087 -20.072 24.824 1 54.8 ? C3B FAD 700 A 1 HETATM 9 O O3B FAD . . . E 5 24.188 -21.136 25.026 1 54.63 ? O3B FAD 700 A 1 HETATM 10 C C2B FAD . . . E 5 26.519 -20.466 25.126 1 54.85 ? C2B FAD 700 A 1 HETATM 11 O O2B FAD . . . E 5 26.617 -21.382 26.192 1 55.14 ? O2B FAD 700 A 1 HETATM 12 C C1B FAD . . . E 5 26.951 -21.103 23.818 1 55.15 ? C1B FAD 700 A 1 HETATM 13 N N9A FAD . . . E 5 28.404 -20.979 23.57 1 55.32 ? N9A FAD 700 A 1 HETATM 14 C C8A FAD . . . E 5 29.101 -19.854 23.212 1 55.39 ? C8A FAD 700 A 1 HETATM 15 N N7A FAD . . . E 5 30.404 -20.185 23.079 1 55.34 ? N7A FAD 700 A 1 HETATM 16 C C5A FAD . . . E 5 30.551 -21.505 23.342 1 55.16 ? C5A FAD 700 A 1 HETATM 17 C C6A FAD . . . E 5 31.661 -22.356 23.358 1 55.07 ? C6A FAD 700 A 1 HETATM 18 N N6A FAD . . . E 5 32.874 -21.852 23.578 1 54.48 ? N6A FAD 700 A 1 HETATM 19 N N1A FAD . . . E 5 31.468 -23.688 23.671 1 55.53 ? N1A FAD 700 A 1 HETATM 20 C C2A FAD . . . E 5 30.212 -24.176 23.977 1 55.47 ? C2A FAD 700 A 1 HETATM 21 N N3A FAD . . . E 5 29.129 -23.321 23.963 1 55.31 ? N3A FAD 700 A 1 HETATM 22 C C4A FAD . . . E 5 29.295 -22.013 23.65 1 55.07 ? C4A FAD 700 A 1 HETATM 23 N N1 FAD . . . E 5 17.085 -9.23 19.648 1 56.96 ? N1 FAD 700 A 1 HETATM 24 C C2 FAD . . . E 5 15.74 -9.14 19.347 1 56.88 ? C2 FAD 700 A 1 HETATM 25 O O2 FAD . . . E 5 15.322 -9.545 18.258 1 56.54 ? O2 FAD 700 A 1 HETATM 26 N N3 FAD . . . E 5 14.878 -8.602 20.282 1 56.88 ? N3 FAD 700 A 1 HETATM 27 C C4 FAD . . . E 5 15.36 -8.155 21.498 1 56.88 ? C4 FAD 700 A 1 HETATM 28 O O4 FAD . . . E 5 14.567 -7.676 22.307 1 57.33 ? O4 FAD 700 A 1 HETATM 29 C C4X FAD . . . E 5 16.723 -8.243 21.799 1 56.66 ? C4X FAD 700 A 1 HETATM 30 N N5 FAD . . . E 5 17.23 -7.792 23.01 1 56.82 ? N5 FAD 700 A 1 HETATM 31 C C5X FAD . . . E 5 18.583 -7.892 23.292 1 56.24 ? C5X FAD 700 A 1 HETATM 32 C C6 FAD . . . E 5 19.082 -7.444 24.514 1 56.05 ? C6 FAD 700 A 1 HETATM 33 C C7 FAD . . . E 5 20.445 -7.537 24.802 1 55.86 ? C7 FAD 700 A 1 HETATM 34 C C7M FAD . . . E 5 20.959 -7.044 26.127 1 55.6 ? C7M FAD 700 A 1 HETATM 35 C C8 FAD . . . E 5 21.309 -8.087 23.851 1 55.83 ? C8 FAD 700 A 1 HETATM 36 C C8M FAD . . . E 5 22.781 -8.191 24.106 1 55.8 ? C8M FAD 700 A 1 HETATM 37 C C9 FAD . . . E 5 20.811 -8.535 22.632 1 55.68 ? C9 FAD 700 A 1 HETATM 38 C C9A FAD . . . E 5 19.45 -8.437 22.349 1 55.99 ? C9A FAD 700 A 1 HETATM 39 N N10 FAD . . . E 5 18.951 -8.874 21.134 1 56.35 ? N10 FAD 700 A 1 HETATM 40 C C10 FAD . . . E 5 17.59 -8.783 20.859 1 56.45 ? C10 FAD 700 A 1 HETATM 41 C C1' FAD . . . E 5 19.884 -9.496 20.128 1 56.54 ? C1' FAD 700 A 1 HETATM 42 C C2' FAD . . . E 5 19.691 -11.019 20.266 1 56.39 ? C2' FAD 700 A 1 HETATM 43 O O2' FAD . . . E 5 19.084 -11.32 21.508 1 56.53 ? O2' FAD 700 A 1 HETATM 44 C C3' FAD . . . E 5 20.965 -11.849 20.183 1 56.05 ? C3' FAD 700 A 1 HETATM 45 O O3' FAD . . . E 5 21.536 -11.686 18.906 1 57.06 ? O3' FAD 700 A 1 HETATM 46 C C4' FAD . . . E 5 20.616 -13.316 20.442 1 55.04 ? C4' FAD 700 A 1 HETATM 47 O O4' FAD . . . E 5 20.405 -13.497 21.823 1 55.36 ? O4' FAD 700 A 1 HETATM 48 C C5' FAD . . . E 5 21.687 -14.303 20.009 1 53.78 ? C5' FAD 700 A 1 HETATM 49 O O5' FAD . . . E 5 21.232 -15.57 20.411 1 52.84 ? O5' FAD 700 A 1 HETATM 50 P P FAD . . . E 5 21.976 -16.912 19.943 1 52.99 ? P FAD 700 A 1 HETATM 51 O O1P FAD . . . E 5 20.985 -18.056 19.945 1 52.73 ? O1P FAD 700 A 1 HETATM 52 O O2P FAD . . . E 5 22.582 -16.737 18.565 1 52.44 ? O2P FAD 700 A 1 HETATM 53 O O3P FAD . . . E 5 23.133 -17.228 21.038 1 52.13 ? O3P FAD 700 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 53 #