data_3AE3 # _model_server_result.job_id jr_9ql_dZOAhHbPfCV8jTg _model_server_result.datetime_utc '2024-11-24 21:33:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ae3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1201}' # _entry.id 3AE3 # _exptl.entry_id 3AE3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 242.23 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-nitro-N-phenylbenzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3AE3 _cell.length_a 71.514 _cell.length_b 84.499 _cell.length_c 295.567 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AE3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NE2 HIS 57 A HIS 57 1_555 E C8M FAD . A FAD 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc1 B SG CYS 65 B CYS 65 1_555 F FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc2 B SG CYS 70 B CYS 70 1_555 F FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc3 B SG CYS 73 B CYS 73 1_555 F FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc4 B SG CYS 85 B CYS 85 1_555 F FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc5 B SG CYS 158 B CYS 158 1_555 G FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc6 B SG CYS 161 B CYS 161 1_555 G FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc7 B SG CYS 164 B CYS 164 1_555 G FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc8 B SG CYS 168 B CYS 168 1_555 H FE1 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc9 B SG CYS 215 B CYS 215 1_555 H FE3 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc10 B SG CYS 225 B CYS 225 1_555 G FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc11 C NE2 HIS 98 C HIS 101 1_555 J FE HEM . C HEM 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc12 J FE HEM . C HEM 1305 1_555 D NE2 HIS 46 D HIS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? # _chem_comp.formula 'C13 H10 N2 O3' _chem_comp.formula_weight 242.23 _chem_comp.id NBI _chem_comp.mon_nstd_flag . _chem_comp.name 2-nitro-N-phenylbenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NBI doub 537 n y C1 N2 NBI sing 538 n n C1 C6 NBI sing 539 n y N1 C7 NBI sing 540 n n N1 C8 NBI sing 541 n n O1 C7 NBI doub 542 n n C2 C3 NBI sing 543 n y C2 C7 NBI sing 544 n n N2 O2 NBI sing 545 n n N2 O3 NBI doub 546 n n C3 C4 NBI doub 547 n y C4 C5 NBI sing 548 n y C5 C6 NBI doub 549 n y C8 C9 NBI doub 550 n y C8 C13 NBI sing 551 n y C9 C10 NBI sing 552 n y C10 C11 NBI doub 553 n y C11 C12 NBI sing 554 n y C12 C13 NBI doub 555 n y N1 HN1 NBI sing 556 n n C3 H3 NBI sing 557 n n C4 H4 NBI sing 558 n n C5 H5 NBI sing 559 n n C6 H6 NBI sing 560 n n C9 H9 NBI sing 561 n n C10 H10 NBI sing 562 n n C11 H11 NBI sing 563 n n C12 H12 NBI sing 564 n n C13 H13 NBI sing 565 n n # _atom_sites.entry_id 3AE3 _atom_sites.fract_transf_matrix[1][1] 0.013983 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011834 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003383 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 FAD A 1 700 700 FAD FAD . F 6 FES B 1 302 302 FES FES . G 7 SF4 B 1 303 303 SF4 FS4 . H 8 F3S B 1 304 304 F3S FS3 . I 9 NBI B 1 1201 1201 NBI NBI . J 10 HEM C 1 1305 1305 HEM HEM . K 11 EPH D 1 1306 1306 EPH EPH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NBI . . . I 9 -24.111 -26.404 60.064 1 86.96 ? C1 NBI 1201 B 1 HETATM 2 N N1 NBI . . . I 9 -21.488 -24.328 61.825 1 86.71 ? N1 NBI 1201 B 1 HETATM 3 O O1 NBI . . . I 9 -21.272 -26.314 60.82 1 86.15 ? O1 NBI 1201 B 1 HETATM 4 C C2 NBI . . . I 9 -23.476 -25.474 61.043 1 86.67 ? C2 NBI 1201 B 1 HETATM 5 N N2 NBI . . . I 9 -23.336 -27.254 59.268 1 87.27 ? N2 NBI 1201 B 1 HETATM 6 O O2 NBI . . . I 9 -22.769 -26.815 58.282 1 87.49 ? O2 NBI 1201 B 1 HETATM 7 C C3 NBI . . . I 9 -24.299 -24.651 61.809 1 86.68 ? C3 NBI 1201 B 1 HETATM 8 O O3 NBI . . . I 9 -23.223 -28.432 59.565 1 87.48 ? O3 NBI 1201 B 1 HETATM 9 C C4 NBI . . . I 9 -25.683 -24.707 61.655 1 86.74 ? C4 NBI 1201 B 1 HETATM 10 C C5 NBI . . . I 9 -26.273 -25.577 60.738 1 86.83 ? C5 NBI 1201 B 1 HETATM 11 C C6 NBI . . . I 9 -25.497 -26.422 59.946 1 86.84 ? C6 NBI 1201 B 1 HETATM 12 C C7 NBI . . . I 9 -21.985 -25.404 61.218 1 86.52 ? C7 NBI 1201 B 1 HETATM 13 C C8 NBI . . . I 9 -20.194 -23.968 61.699 1 86.92 ? C8 NBI 1201 B 1 HETATM 14 C C9 NBI . . . I 9 -19.832 -23.023 60.738 1 86.98 ? C9 NBI 1201 B 1 HETATM 15 C C10 NBI . . . I 9 -18.496 -22.647 60.607 1 86.95 ? C10 NBI 1201 B 1 HETATM 16 C C11 NBI . . . I 9 -17.531 -23.213 61.439 1 87.01 ? C11 NBI 1201 B 1 HETATM 17 C C12 NBI . . . I 9 -17.893 -24.157 62.401 1 87 ? C12 NBI 1201 B 1 HETATM 18 C C13 NBI . . . I 9 -19.228 -24.534 62.533 1 86.97 ? C13 NBI 1201 B 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 18 #