data_3AE4
#
_model_server_result.job_id            NRs8guTp_jhQ7XYYYI-nfw 
_model_server_result.datetime_utc      '2024-11-14 03:47:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ae4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":1306}' 
#
_entry.id    3AE4 
#
_exptl.entry_id    3AE4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              709.933 
_entity.id                          11 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3AE4 
_cell.length_a            71.562 
_cell.length_b            84.222 
_cell.length_c            294.217 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3AE4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      11 
_struct_asym.id                             K 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NE2 HIS 57 A HIS 57 1_555 E C8M FAD . A FAD 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? 
metalc ? metalc1 B SG CYS 65 B CYS 65 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
metalc ? metalc2 B SG CYS 70 B CYS 70 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc3 B SG CYS 73 B CYS 73 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc4 B SG CYS 85 B CYS 85 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? 
metalc ? metalc5 B SG CYS 158 B CYS 158 1_555 H FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc6 B SG CYS 161 B CYS 161 1_555 H FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc7 B SG CYS 164 B CYS 164 1_555 H FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc8 B SG CYS 168 B CYS 168 1_555 I FE3 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc9 B SG CYS 215 B CYS 215 1_555 I FE4 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc10 B SG CYS 221 B CYS 221 1_555 I FE1 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc11 B SG CYS 225 B CYS 225 1_555 H FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? 
metalc ? metalc12 C NE2 HIS 98 C HIS 101 1_555 J FE HEM . C HEM 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc13 J FE HEM . C HEM 1305 1_555 D NE2 HIS 46 D HIS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
#
_chem_comp.formula           'C39 H68 N O8 P' 
_chem_comp.formula_weight    709.933 
_chem_comp.id                EPH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 EPH sing 83 n n 
C1 O2 EPH sing 84 n n 
C1 H11 EPH sing 85 n n 
C1 H12A EPH sing 86 n n 
C2 C37 EPH sing 87 n n 
C2 O1 EPH sing 88 n n 
C2 H2 EPH sing 89 n n 
C4 O2 EPH sing 90 n n 
C4 O4 EPH doub 91 n n 
C4 C18 EPH sing 92 n n 
C18 C19 EPH sing 93 n n 
C18 H181 EPH sing 94 n n 
C18 H182 EPH sing 95 n n 
C19 C20 EPH sing 96 n n 
C19 H191 EPH sing 97 n n 
C19 H192 EPH sing 98 n n 
C20 C21 EPH sing 99 n n 
C20 H201 EPH sing 100 n n 
C20 H202 EPH sing 101 n n 
C21 C22 EPH sing 102 n n 
C21 H211 EPH sing 103 n n 
C21 H212 EPH sing 104 n n 
C22 C23 EPH sing 105 n n 
C22 H221 EPH sing 106 n n 
C22 H222 EPH sing 107 n n 
C23 C24 EPH sing 108 n n 
C23 H231 EPH sing 109 n n 
C23 H232 EPH sing 110 n n 
C24 C25 EPH doub 111 e n 
C24 H24 EPH sing 112 n n 
C25 C26 EPH sing 113 n n 
C25 H25 EPH sing 114 n n 
C26 C27 EPH sing 115 n n 
C26 H261 EPH sing 116 n n 
C26 H262 EPH sing 117 n n 
C27 C28 EPH sing 118 n n 
C27 H271 EPH sing 119 n n 
C27 H272 EPH sing 120 n n 
C28 C29 EPH doub 121 e n 
C28 H28 EPH sing 122 n n 
C29 C30 EPH sing 123 n n 
C29 H29 EPH sing 124 n n 
C30 C31 EPH sing 125 n n 
C30 H301 EPH sing 126 n n 
C30 H302 EPH sing 127 n n 
C31 C32 EPH sing 128 n n 
C31 H311 EPH sing 129 n n 
C31 H312 EPH sing 130 n n 
C32 C33 EPH doub 131 e n 
C32 H32 EPH sing 132 n n 
C33 C34 EPH sing 133 n n 
C33 H33 EPH sing 134 n n 
C34 H341 EPH sing 135 n n 
C34 H342 EPH sing 136 n n 
C34 H343 EPH sing 137 n n 
C37 O5 EPH sing 138 n n 
C37 H371 EPH sing 139 n n 
C37 H372 EPH sing 140 n n 
O5 P1 EPH sing 141 n n 
C3 O1 EPH sing 142 n n 
C3 O3 EPH doub 143 n n 
C3 C5 EPH sing 144 n n 
C5 C6 EPH sing 145 n n 
C5 H51 EPH sing 146 n n 
C5 H52 EPH sing 147 n n 
C6 C7 EPH sing 148 n n 
C6 H61 EPH sing 149 n n 
C6 H62 EPH sing 150 n n 
C7 C8 EPH sing 151 n n 
C7 H71 EPH sing 152 n n 
C7 H72 EPH sing 153 n n 
C8 C9 EPH sing 154 n n 
C8 H81 EPH sing 155 n n 
C8 H82 EPH sing 156 n n 
C9 C10 EPH sing 157 n n 
C9 H91 EPH sing 158 n n 
C9 H92 EPH sing 159 n n 
C10 C11 EPH sing 160 n n 
C10 H101 EPH sing 161 n n 
C10 H102 EPH sing 162 n n 
C11 C12 EPH sing 163 n n 
C11 H111 EPH sing 164 n n 
C11 H112 EPH sing 165 n n 
C12 C13 EPH doub 166 e n 
C12 H12 EPH sing 167 n n 
C13 C14 EPH sing 168 n n 
C13 H13 EPH sing 169 n n 
C14 C15 EPH sing 170 n n 
C14 H141 EPH sing 171 n n 
C14 H142 EPH sing 172 n n 
C15 C16 EPH doub 173 e n 
C15 H15 EPH sing 174 n n 
C16 C17 EPH sing 175 n n 
C16 H16 EPH sing 176 n n 
C17 C35 EPH sing 177 n n 
C17 H171 EPH sing 178 n n 
C17 H172 EPH sing 179 n n 
C35 C36 EPH sing 180 n n 
C35 H351 EPH sing 181 n n 
C35 H352 EPH sing 182 n n 
C36 H361 EPH sing 183 n n 
C36 H362 EPH sing 184 n n 
C36 H363 EPH sing 185 n n 
P1 O6 EPH sing 186 n n 
P1 O7 EPH doub 187 n n 
P1 O8 EPH sing 188 n n 
O6 HO6 EPH sing 189 n n 
O8 C38 EPH sing 190 n n 
C38 C39 EPH sing 191 n n 
C38 H381 EPH sing 192 n n 
C38 H382 EPH sing 193 n n 
C39 N1 EPH sing 194 n n 
C39 H391 EPH sing 195 n n 
C39 H392 EPH sing 196 n n 
N1 HN11 EPH sing 197 n n 
N1 HN12 EPH sing 198 n n 
#
_atom_sites.entry_id                     3AE4 
_atom_sites.fract_transf_matrix[1][1]    0.013974 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011873 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003399 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 FAD A 1 700 700 FAD FAD . 
F 6 MLI A 1 701 701 MLI MLI . 
G 7 FES B 1 302 302 FES FES . 
H 8 SF4 B 1 303 303 SF4 SF4 . 
I 9 F3S B 1 304 304 F3S F3S . 
J 10 HEM C 1 1305 1305 HEM HEM . 
K 11 EPH D 1 1306 1306 EPH EPH . 
L 12 N1M D 1 1201 1201 N1M N1M . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EPH . . . K 11 -8.402 -20.98 85.023 1 118.71 ? C1 EPH 1306 D 1 
HETATM 2 C C2 EPH . . . K 11 -9.786 -21.604 85.183 1 119.25 ? C2 EPH 1306 D 1 
HETATM 3 C C4 EPH . . . K 11 -6.688 -20.976 83.18 1 118.23 ? C4 EPH 1306 D 1 
HETATM 4 O O2 EPH . . . K 11 -7.66 -21.668 84.015 1 118.44 ? O2 EPH 1306 D 1 
HETATM 5 O O4 EPH . . . K 11 -5.612 -20.665 83.663 1 118.3 ? O4 EPH 1306 D 1 
HETATM 6 C C18 EPH . . . K 11 -7.015 -20.647 81.739 1 118.12 ? C18 EPH 1306 D 1 
HETATM 7 C C19 EPH . . . K 11 -6.101 -21.39 80.763 1 118.19 ? C19 EPH 1306 D 1 
HETATM 8 C C20 EPH . . . K 11 -6.799 -21.67 79.429 1 118.16 ? C20 EPH 1306 D 1 
HETATM 9 C C21 EPH . . . K 11 -6.616 -20.543 78.411 1 117.96 ? C21 EPH 1306 D 1 
HETATM 10 C C22 EPH . . . K 11 -7.955 -20.028 77.889 1 117.83 ? C22 EPH 1306 D 1 
HETATM 11 C C23 EPH . . . K 11 -8.305 -18.668 78.489 1 118.02 ? C23 EPH 1306 D 1 
HETATM 12 C C24 EPH . . . K 11 -9.674 -18.18 78.023 1 118.36 ? C24 EPH 1306 D 1 
HETATM 13 C C25 EPH . . . K 11 -9.636 -16.718 77.582 1 118.57 ? C25 EPH 1306 D 1 
HETATM 14 C C26 EPH . . . K 11 -10.436 -16.495 76.298 1 118.67 ? C26 EPH 1306 D 1 
HETATM 15 C C27 EPH . . . K 11 -9.539 -16.076 75.133 1 118.74 ? C27 EPH 1306 D 1 
HETATM 16 C C28 EPH . . . K 11 -9.577 -17.096 73.994 1 118.56 ? C28 EPH 1306 D 1 
HETATM 17 C C29 EPH . . . K 11 -8.311 -17.049 73.137 1 118.05 ? C29 EPH 1306 D 1 
HETATM 18 C C30 EPH . . . K 11 -7.648 -18.419 73.027 1 117.39 ? C30 EPH 1306 D 1 
HETATM 19 C C31 EPH . . . K 11 -6.316 -18.44 73.744 1 117 ? C31 EPH 1306 D 1 
HETATM 20 C C37 EPH . . . K 11 -10.32 -21.239 86.568 1 120.69 ? C37 EPH 1306 D 1 
HETATM 21 O O5 EPH . . . K 11 -11.407 -22.09 86.948 1 122.67 ? O5 EPH 1306 D 1 
HETATM 22 C C3 EPH . . . K 11 -10.523 -23.602 83.97 1 117.3 ? C3 EPH 1306 D 1 
HETATM 23 O O1 EPH . . . K 11 -9.699 -23.026 85.034 1 118.43 ? O1 EPH 1306 D 1 
HETATM 24 O O3 EPH . . . K 11 -11.619 -24.063 84.251 1 117.25 ? O3 EPH 1306 D 1 
HETATM 25 C C5 EPH . . . K 11 -10.029 -23.649 82.538 1 116.14 ? C5 EPH 1306 D 1 
HETATM 26 C C6 EPH . . . K 11 -9.537 -25.049 82.177 1 114.62 ? C6 EPH 1306 D 1 
HETATM 27 C C7 EPH . . . K 11 -9.487 -25.252 80.665 1 113.55 ? C7 EPH 1306 D 1 
HETATM 28 C C8 EPH . . . K 11 -8.057 -25.202 80.131 1 112.72 ? C8 EPH 1306 D 1 
HETATM 29 C C9 EPH . . . K 11 -7.604 -26.552 79.579 1 111.88 ? C9 EPH 1306 D 1 
HETATM 30 C C10 EPH . . . K 11 -6.391 -26.418 78.658 1 111.04 ? C10 EPH 1306 D 1 
HETATM 31 C C11 EPH . . . K 11 -5.306 -27.44 78.995 1 110.01 ? C11 EPH 1306 D 1 
HETATM 32 C C12 EPH . . . K 11 -4.385 -27.71 77.808 1 108.94 ? C12 EPH 1306 D 1 
HETATM 33 C C13 EPH . . . K 11 -2.948 -27.298 78.117 1 108.23 ? C13 EPH 1306 D 1 
HETATM 34 C C14 EPH . . . K 11 -1.956 -28.428 77.848 1 107.6 ? C14 EPH 1306 D 1 
HETATM 35 C C15 EPH . . . K 11 -0.513 -27.955 78.008 1 106.98 ? C15 EPH 1306 D 1 
HETATM 36 C C16 EPH . . . K 11 0.208 -28.681 79.14 1 106.5 ? C16 EPH 1306 D 1 
HETATM 37 C C17 EPH . . . K 11 1.501 -27.982 79.502 1 106.05 ? C17 EPH 1306 D 1 
HETATM 38 P P1 EPH . . . K 11 -12.948 -21.662 86.71 1 123.77 ? P1 EPH 1306 D 1 
HETATM 39 O O6 EPH . . . K 11 -13.191 -19.94 87.134 1 123.75 ? O6 EPH 1306 D 1 
HETATM 40 O O7 EPH . . . K 11 -13.362 -21.928 85.194 1 123.58 ? O7 EPH 1306 D 1 
HETATM 41 O O8 EPH . . . K 11 -13.794 -22.611 87.713 1 123.72 ? O8 EPH 1306 D 1 
HETATM 42 C C38 EPH . . . K 11 -14.944 -23.342 87.273 1 123.86 ? C38 EPH 1306 D 1 
HETATM 43 C C39 EPH . . . K 11 -16.167 -22.428 87.198 1 123.92 ? C39 EPH 1306 D 1 
HETATM 44 N N1 EPH . . . K 11 -16.479 -22.127 85.812 1 123.85 ? N1 EPH 1306 D 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           44 
#