data_3AEA
#
_model_server_result.job_id            VvJ828Dn86t9nbJAWNJrNw 
_model_server_result.datetime_utc      '2024-10-19 00:50:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3aea 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1305}' 
#
_entry.id    3AEA 
#
_exptl.entry_id    3AEA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          10 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3AEA 
_cell.length_a            71.505 
_cell.length_b            83.751 
_cell.length_c            294.959 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3AEA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      10 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NE2 HIS 57 A HIS 57 1_555 E C8M FAD . A FAD 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
metalc ? metalc1 B SG CYS 65 B CYS 65 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
metalc ? metalc2 B SG CYS 70 B CYS 70 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc3 B SG CYS 73 B CYS 73 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? 
metalc ? metalc4 B SG CYS 158 B CYS 158 1_555 H FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? 
metalc ? metalc5 B SG CYS 161 B CYS 161 1_555 H FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc6 B SG CYS 164 B CYS 164 1_555 H FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
metalc ? metalc7 B SG CYS 168 B CYS 168 1_555 I FE4 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc8 B SG CYS 215 B CYS 215 1_555 I FE1 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? 
metalc ? metalc9 B SG CYS 225 B CYS 225 1_555 H FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? 
metalc ? metalc10 C NE2 HIS 98 C HIS 101 1_555 J FE HEM . C HEM 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
metalc ? metalc11 J FE HEM . C HEM 1305 1_555 D NE2 HIS 46 D HIS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 390 n n 
CHA C4D HEM doub 391 n n 
CHA HHA HEM sing 392 n n 
CHB C4A HEM sing 393 n n 
CHB C1B HEM doub 394 n n 
CHB HHB HEM sing 395 n n 
CHC C4B HEM sing 396 n n 
CHC C1C HEM doub 397 n n 
CHC HHC HEM sing 398 n n 
CHD C4C HEM doub 399 n n 
CHD C1D HEM sing 400 n n 
CHD HHD HEM sing 401 n n 
C1A C2A HEM doub 402 n y 
C1A NA HEM sing 403 n y 
C2A C3A HEM sing 404 n y 
C2A CAA HEM sing 405 n n 
C3A C4A HEM doub 406 n y 
C3A CMA HEM sing 407 n n 
C4A NA HEM sing 408 n y 
CMA HMA HEM sing 409 n n 
CMA HMAA HEM sing 410 n n 
CMA HMAB HEM sing 411 n n 
CAA CBA HEM sing 412 n n 
CAA HAA HEM sing 413 n n 
CAA HAAA HEM sing 414 n n 
CBA CGA HEM sing 415 n n 
CBA HBA HEM sing 416 n n 
CBA HBAA HEM sing 417 n n 
CGA O1A HEM doub 418 n n 
CGA O2A HEM sing 419 n n 
C1B C2B HEM sing 420 n n 
C1B NB HEM sing 421 n n 
C2B C3B HEM doub 422 n n 
C2B CMB HEM sing 423 n n 
C3B C4B HEM sing 424 n n 
C3B CAB HEM sing 425 n n 
C4B NB HEM doub 426 n n 
CMB HMB HEM sing 427 n n 
CMB HMBA HEM sing 428 n n 
CMB HMBB HEM sing 429 n n 
CAB CBB HEM doub 430 n n 
CAB HAB HEM sing 431 n n 
CBB HBB HEM sing 432 n n 
CBB HBBA HEM sing 433 n n 
C1C C2C HEM sing 434 n y 
C1C NC HEM sing 435 n y 
C2C C3C HEM doub 436 n y 
C2C CMC HEM sing 437 n n 
C3C C4C HEM sing 438 n y 
C3C CAC HEM sing 439 n n 
C4C NC HEM sing 440 n y 
CMC HMC HEM sing 441 n n 
CMC HMCA HEM sing 442 n n 
CMC HMCB HEM sing 443 n n 
CAC CBC HEM doub 444 n n 
CAC HAC HEM sing 445 n n 
CBC HBC HEM sing 446 n n 
CBC HBCA HEM sing 447 n n 
C1D C2D HEM sing 448 n n 
C1D ND HEM doub 449 n n 
C2D C3D HEM doub 450 n n 
C2D CMD HEM sing 451 n n 
C3D C4D HEM sing 452 n n 
C3D CAD HEM sing 453 n n 
C4D ND HEM sing 454 n n 
CMD HMD HEM sing 455 n n 
CMD HMDA HEM sing 456 n n 
CMD HMDB HEM sing 457 n n 
CAD CBD HEM sing 458 n n 
CAD HAD HEM sing 459 n n 
CAD HADA HEM sing 460 n n 
CBD CGD HEM sing 461 n n 
CBD HBD HEM sing 462 n n 
CBD HBDA HEM sing 463 n n 
CGD O1D HEM doub 464 n n 
CGD O2D HEM sing 465 n n 
O2A H2A HEM sing 466 n n 
O2D H2D HEM sing 467 n n 
FE NA HEM sing 468 n n 
FE NB HEM sing 469 n n 
FE NC HEM sing 470 n n 
FE ND HEM sing 471 n n 
#
_atom_sites.entry_id                     3AEA 
_atom_sites.fract_transf_matrix[1][1]    0.013985 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01194 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00339 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 FAD A 1 700 700 FAD FAD . 
F 6 MLI A 1 701 701 MLI MLI . 
G 7 FES B 1 302 302 FES FES . 
H 8 SF4 B 1 303 303 SF4 SF4 . 
I 9 F3S B 1 304 304 F3S F3S . 
J 10 HEM C 1 1305 1305 HEM HEM . 
K 11 F9A D 1 1201 1201 F9A F9A . 
L 12 EPH D 1 1306 1306 EPH EPH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . J 10 2.375 26.861 -65.065 1 95.48 ? CHA HEM 1305 C 1 
HETATM 2 C CHB HEM . . . J 10 -1.815 24.514 -65.682 1 95.51 ? CHB HEM 1305 C 1 
HETATM 3 C CHC HEM . . . J 10 -1.749 25.809 -70.36 1 95.34 ? CHC HEM 1305 C 1 
HETATM 4 C CHD HEM . . . J 10 1.794 29.006 -69.417 1 95.25 ? CHD HEM 1305 C 1 
HETATM 5 C C1A HEM . . . J 10 1.189 26.217 -64.787 1 95.61 ? C1A HEM 1305 C 1 
HETATM 6 C C2A HEM . . . J 10 0.617 25.965 -63.477 1 95.97 ? C2A HEM 1305 C 1 
HETATM 7 C C3A HEM . . . J 10 -0.542 25.317 -63.648 1 95.8 ? C3A HEM 1305 C 1 
HETATM 8 C C4A HEM . . . J 10 -0.743 25.133 -65.074 1 95.6 ? C4A HEM 1305 C 1 
HETATM 9 C CMA HEM . . . J 10 -1.505 24.842 -62.532 1 95.78 ? CMA HEM 1305 C 1 
HETATM 10 C CAA HEM . . . J 10 1.237 26.384 -62.122 1 96.8 ? CAA HEM 1305 C 1 
HETATM 11 C CBA HEM . . . J 10 2.359 25.435 -61.712 1 97.56 ? CBA HEM 1305 C 1 
HETATM 12 C CGA HEM . . . J 10 2.919 25.891 -60.389 1 97.95 ? CGA HEM 1305 C 1 
HETATM 13 O O1A HEM . . . J 10 3.818 26.775 -60.389 1 98.18 ? O1A HEM 1305 C 1 
HETATM 14 O O2A HEM . . . J 10 2.458 25.374 -59.336 1 97.98 ? O2A HEM 1305 C 1 
HETATM 15 C C1B HEM . . . J 10 -2.109 24.562 -67.029 1 95.34 ? C1B HEM 1305 C 1 
HETATM 16 C C2B HEM . . . J 10 -3.069 23.734 -67.737 1 95.25 ? C2B HEM 1305 C 1 
HETATM 17 C C3B HEM . . . J 10 -3.044 24.094 -69.025 1 95.3 ? C3B HEM 1305 C 1 
HETATM 18 C C4B HEM . . . J 10 -2.075 25.162 -69.184 1 95.3 ? C4B HEM 1305 C 1 
HETATM 19 C CMB HEM . . . J 10 -3.957 22.632 -67.109 1 95.11 ? CMB HEM 1305 C 1 
HETATM 20 C CAB HEM . . . J 10 -3.903 23.486 -70.155 1 95.46 ? CAB HEM 1305 C 1 
HETATM 21 C CBB HEM . . . J 10 -5.148 23.929 -70.35 1 95.61 ? CBB HEM 1305 C 1 
HETATM 22 C C1C HEM . . . J 10 -0.843 26.843 -70.502 1 95.41 ? C1C HEM 1305 C 1 
HETATM 23 C C2C HEM . . . J 10 -0.673 27.69 -71.67 1 95.36 ? C2C HEM 1305 C 1 
HETATM 24 C C3C HEM . . . J 10 0.304 28.567 -71.405 1 95.34 ? C3C HEM 1305 C 1 
HETATM 25 C C4C HEM . . . J 10 0.791 28.313 -70.063 1 95.33 ? C4C HEM 1305 C 1 
HETATM 26 C CMC HEM . . . J 10 -1.479 27.594 -72.988 1 95.22 ? CMC HEM 1305 C 1 
HETATM 27 C CAC HEM . . . J 10 0.828 29.67 -72.351 1 95.39 ? CAC HEM 1305 C 1 
HETATM 28 C CBC HEM . . . J 10 0.338 30.91 -72.251 1 95.6 ? CBC HEM 1305 C 1 
HETATM 29 C C1D HEM . . . J 10 2.31 28.74 -68.167 1 95.24 ? C1D HEM 1305 C 1 
HETATM 30 C C2D HEM . . . J 10 3.409 29.441 -67.536 1 95.26 ? C2D HEM 1305 C 1 
HETATM 31 C C3D HEM . . . J 10 3.594 28.766 -66.169 1 95.32 ? C3D HEM 1305 C 1 
HETATM 32 C C4D HEM . . . J 10 2.587 27.729 -66.115 1 95.41 ? C4D HEM 1305 C 1 
HETATM 33 C CMD HEM . . . J 10 4.228 30.618 -68.11 1 95.18 ? CMD HEM 1305 C 1 
HETATM 34 C CAD HEM . . . J 10 4.632 29.119 -65.081 1 95.48 ? CAD HEM 1305 C 1 
HETATM 35 C CBD HEM . . . J 10 5.84 28.193 -65.179 1 95.63 ? CBD HEM 1305 C 1 
HETATM 36 C CGD HEM . . . J 10 6.147 27.6 -63.826 1 95.9 ? CGD HEM 1305 C 1 
HETATM 37 O O1D HEM . . . J 10 6.242 28.362 -62.826 1 95.74 ? O1D HEM 1305 C 1 
HETATM 38 O O2D HEM . . . J 10 6.313 26.355 -63.748 1 96.27 ? O2D HEM 1305 C 1 
HETATM 39 N NA HEM . . . J 10 0.333 25.696 -65.736 1 95.44 ? NA HEM 1305 C 1 
HETATM 40 N NB HEM . . . J 10 -1.523 25.418 -67.944 1 95.33 ? NB HEM 1305 C 1 
HETATM 41 N NC HEM . . . J 10 0.07 27.254 -69.545 1 95.39 ? NC HEM 1305 C 1 
HETATM 42 N ND HEM . . . J 10 1.86 27.751 -67.301 1 95.37 ? ND HEM 1305 C 1 
HETATM 43 FE FE HEM . . . J 10 0.2 26.531 -67.621 1 95.29 ? FE HEM 1305 C 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           36 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           365 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#