data_3AEA # _model_server_result.job_id WzYN5bcjkeGr7H7v7xr77g _model_server_result.datetime_utc '2024-10-19 00:54:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3aea # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":700}' # _entry.id 3AEA # _exptl.entry_id 3AEA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3AEA _cell.length_a 71.505 _cell.length_b 83.751 _cell.length_c 294.959 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AEA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NE2 HIS 57 A HIS 57 1_555 E C8M FAD . A FAD 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc1 B SG CYS 65 B CYS 65 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc2 B SG CYS 70 B CYS 70 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc3 B SG CYS 73 B CYS 73 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc4 B SG CYS 158 B CYS 158 1_555 H FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc5 B SG CYS 161 B CYS 161 1_555 H FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc6 B SG CYS 164 B CYS 164 1_555 H FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc7 B SG CYS 168 B CYS 168 1_555 I FE4 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc8 B SG CYS 215 B CYS 215 1_555 I FE1 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc9 B SG CYS 225 B CYS 225 1_555 H FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc10 C NE2 HIS 98 C HIS 101 1_555 J FE HEM . C HEM 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc11 J FE HEM . C HEM 1305 1_555 D NE2 HIS 46 D HIS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 249 n n PA O2A FAD sing 250 n n PA O5B FAD sing 251 n n PA O3P FAD sing 252 n n O2A HOA2 FAD sing 253 n n O5B C5B FAD sing 254 n n C5B C4B FAD sing 255 n n C5B H51A FAD sing 256 n n C5B H52A FAD sing 257 n n C4B O4B FAD sing 258 n n C4B C3B FAD sing 259 n n C4B H4B FAD sing 260 n n O4B C1B FAD sing 261 n n C3B O3B FAD sing 262 n n C3B C2B FAD sing 263 n n C3B H3B FAD sing 264 n n O3B HO3A FAD sing 265 n n C2B O2B FAD sing 266 n n C2B C1B FAD sing 267 n n C2B H2B FAD sing 268 n n O2B HO2A FAD sing 269 n n C1B N9A FAD sing 270 n n C1B H1B FAD sing 271 n n N9A C8A FAD sing 272 n y N9A C4A FAD sing 273 n y C8A N7A FAD doub 274 n y C8A H8A FAD sing 275 n n N7A C5A FAD sing 276 n y C5A C6A FAD sing 277 n y C5A C4A FAD doub 278 n y C6A N6A FAD sing 279 n n C6A N1A FAD doub 280 n y N6A H61A FAD sing 281 n n N6A H62A FAD sing 282 n n N1A C2A FAD sing 283 n y C2A N3A FAD doub 284 n y C2A H2A FAD sing 285 n n N3A C4A FAD sing 286 n y N1 C2 FAD sing 287 n n N1 C10 FAD doub 288 n n C2 O2 FAD doub 289 n n C2 N3 FAD sing 290 n n N3 C4 FAD sing 291 n n N3 HN3 FAD sing 292 n n C4 O4 FAD doub 293 n n C4 C4X FAD sing 294 n n C4X N5 FAD doub 295 n n C4X C10 FAD sing 296 n n N5 C5X FAD sing 297 n n C5X C6 FAD doub 298 n y C5X C9A FAD sing 299 n y C6 C7 FAD sing 300 n y C6 H6 FAD sing 301 n n C7 C7M FAD sing 302 n n C7 C8 FAD doub 303 n y C7M HM71 FAD sing 304 n n C7M HM72 FAD sing 305 n n C7M HM73 FAD sing 306 n n C8 C8M FAD sing 307 n n C8 C9 FAD sing 308 n y C8M HM81 FAD sing 309 n n C8M HM82 FAD sing 310 n n C8M HM83 FAD sing 311 n n C9 C9A FAD doub 312 n y C9 H9 FAD sing 313 n n C9A N10 FAD sing 314 n n N10 C10 FAD sing 315 n n N10 C1' FAD sing 316 n n C1' C2' FAD sing 317 n n C1' "H1'1" FAD sing 318 n n C1' "H1'2" FAD sing 319 n n C2' O2' FAD sing 320 n n C2' C3' FAD sing 321 n n C2' H2' FAD sing 322 n n O2' HO2' FAD sing 323 n n C3' O3' FAD sing 324 n n C3' C4' FAD sing 325 n n C3' H3' FAD sing 326 n n O3' HO3' FAD sing 327 n n C4' O4' FAD sing 328 n n C4' C5' FAD sing 329 n n C4' H4' FAD sing 330 n n O4' HO4' FAD sing 331 n n C5' O5' FAD sing 332 n n C5' "H5'1" FAD sing 333 n n C5' "H5'2" FAD sing 334 n n O5' P FAD sing 335 n n P O1P FAD doub 336 n n P O2P FAD sing 337 n n P O3P FAD sing 338 n n O2P HOP2 FAD sing 339 n n # _atom_sites.entry_id 3AEA _atom_sites.fract_transf_matrix[1][1] 0.013985 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01194 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00339 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 FAD A 1 700 700 FAD FAD . F 6 MLI A 1 701 701 MLI MLI . G 7 FES B 1 302 302 FES FES . H 8 SF4 B 1 303 303 SF4 SF4 . I 9 F3S B 1 304 304 F3S F3S . J 10 HEM C 1 1305 1305 HEM HEM . K 11 F9A D 1 1201 1201 F9A F9A . L 12 EPH D 1 1306 1306 EPH EPH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . E 5 22.898 16.296 -22.848 1 82.19 ? PA FAD 700 A 1 HETATM 2 O O1A FAD . . . E 5 24.009 15.416 -23.371 1 82.5 ? O1A FAD 700 A 1 HETATM 3 O O2A FAD . . . E 5 21.559 15.837 -23.368 1 82.28 ? O2A FAD 700 A 1 HETATM 4 O O5B FAD . . . E 5 23.196 17.816 -23.267 1 82.34 ? O5B FAD 700 A 1 HETATM 5 C C5B FAD . . . E 5 24.465 18.378 -23.015 1 82.43 ? C5B FAD 700 A 1 HETATM 6 C C4B FAD . . . E 5 24.577 19.731 -23.704 1 82.49 ? C4B FAD 700 A 1 HETATM 7 O O4B FAD . . . E 5 25.671 20.445 -23.165 1 82.68 ? O4B FAD 700 A 1 HETATM 8 C C3B FAD . . . E 5 24.807 19.591 -25.199 1 82.43 ? C3B FAD 700 A 1 HETATM 9 O O3B FAD . . . E 5 23.782 20.276 -25.866 1 82.29 ? O3B FAD 700 A 1 HETATM 10 C C2B FAD . . . E 5 26.123 20.282 -25.483 1 82.58 ? C2B FAD 700 A 1 HETATM 11 O O2B FAD . . . E 5 26.003 21.215 -26.529 1 82.87 ? O2B FAD 700 A 1 HETATM 12 C C1B FAD . . . E 5 26.478 20.991 -24.189 1 82.77 ? C1B FAD 700 A 1 HETATM 13 N N9A FAD . . . E 5 27.913 20.803 -23.905 1 82.91 ? N9A FAD 700 A 1 HETATM 14 C C8A FAD . . . E 5 28.563 19.639 -23.577 1 82.81 ? C8A FAD 700 A 1 HETATM 15 N N7A FAD . . . E 5 29.875 19.916 -23.406 1 82.78 ? N7A FAD 700 A 1 HETATM 16 C C5A FAD . . . E 5 30.075 21.236 -23.62 1 82.87 ? C5A FAD 700 A 1 HETATM 17 C C6A FAD . . . E 5 31.216 22.035 -23.588 1 82.88 ? C6A FAD 700 A 1 HETATM 18 N N6A FAD . . . E 5 32.375 21.481 -23.925 1 82.61 ? N6A FAD 700 A 1 HETATM 19 N N1A FAD . . . E 5 31.082 23.384 -23.856 1 83.05 ? N1A FAD 700 A 1 HETATM 20 C C2A FAD . . . E 5 29.853 23.937 -24.17 1 82.96 ? C2A FAD 700 A 1 HETATM 21 N N3A FAD . . . E 5 28.735 23.132 -24.209 1 82.76 ? N3A FAD 700 A 1 HETATM 22 C C4A FAD . . . E 5 28.845 21.806 -23.938 1 82.87 ? C4A FAD 700 A 1 HETATM 23 N N1 FAD . . . E 5 16.798 8.546 -19.862 1 87.78 ? N1 FAD 700 A 1 HETATM 24 C C2 FAD . . . E 5 15.426 8.532 -19.701 1 87.8 ? C2 FAD 700 A 1 HETATM 25 O O2 FAD . . . E 5 14.936 8.829 -18.613 1 87.99 ? O2 FAD 700 A 1 HETATM 26 N N3 FAD . . . E 5 14.612 8.197 -20.765 1 87.61 ? N3 FAD 700 A 1 HETATM 27 C C4 FAD . . . E 5 15.173 7.873 -21.988 1 87.67 ? C4 FAD 700 A 1 HETATM 28 O O4 FAD . . . E 5 14.43 7.578 -22.923 1 87.94 ? O4 FAD 700 A 1 HETATM 29 C C4X FAD . . . E 5 16.563 7.881 -22.155 1 87.47 ? C4X FAD 700 A 1 HETATM 30 N N5 FAD . . . E 5 17.139 7.555 -23.371 1 87.21 ? N5 FAD 700 A 1 HETATM 31 C C5X FAD . . . E 5 18.511 7.57 -23.526 1 86.99 ? C5X FAD 700 A 1 HETATM 32 C C6 FAD . . . E 5 19.087 7.245 -24.754 1 87.11 ? C6 FAD 700 A 1 HETATM 33 C C7 FAD . . . E 5 20.477 7.254 -24.908 1 87.2 ? C7 FAD 700 A 1 HETATM 34 C C7M FAD . . . E 5 21.069 6.898 -26.245 1 86.85 ? C7M FAD 700 A 1 HETATM 35 C C8 FAD . . . E 5 21.284 7.599 -23.816 1 87.32 ? C8 FAD 700 A 1 HETATM 36 C C8M FAD . . . E 5 22.782 7.625 -23.898 1 87.61 ? C8M FAD 700 A 1 HETATM 37 C C9 FAD . . . E 5 20.705 7.925 -22.596 1 87.15 ? C9 FAD 700 A 1 HETATM 38 C C9A FAD . . . E 5 19.321 7.906 -22.443 1 86.92 ? C9A FAD 700 A 1 HETATM 39 N N10 FAD . . . E 5 18.76 8.252 -21.224 1 86.81 ? N10 FAD 700 A 1 HETATM 40 C C10 FAD . . . E 5 17.379 8.217 -21.077 1 87.33 ? C10 FAD 700 A 1 HETATM 41 C C1' FAD . . . E 5 19.523 9.265 -20.408 1 86.04 ? C1' FAD 700 A 1 HETATM 42 C C2' FAD . . . E 5 19.19 10.711 -20.797 1 85.16 ? C2' FAD 700 A 1 HETATM 43 O O2' FAD . . . E 5 18.577 10.765 -22.07 1 84.85 ? O2' FAD 700 A 1 HETATM 44 C C3' FAD . . . E 5 20.428 11.61 -20.787 1 84.66 ? C3' FAD 700 A 1 HETATM 45 O O3' FAD . . . E 5 21.205 11.368 -19.633 1 84.76 ? O3' FAD 700 A 1 HETATM 46 C C4' FAD . . . E 5 20.018 13.078 -20.832 1 84.03 ? C4' FAD 700 A 1 HETATM 47 O O4' FAD . . . E 5 19.588 13.403 -22.132 1 84 ? O4' FAD 700 A 1 HETATM 48 C C5' FAD . . . E 5 21.151 14.02 -20.451 1 83.44 ? C5' FAD 700 A 1 HETATM 49 O O5' FAD . . . E 5 20.704 15.348 -20.601 1 82.77 ? O5' FAD 700 A 1 HETATM 50 P P FAD . . . E 5 21.689 16.574 -20.271 1 82.59 ? P FAD 700 A 1 HETATM 51 O O1P FAD . . . E 5 21.016 17.887 -20.596 1 82.37 ? O1P FAD 700 A 1 HETATM 52 O O2P FAD . . . E 5 22.115 16.535 -18.82 1 82.43 ? O2P FAD 700 A 1 HETATM 53 O O3P FAD . . . E 5 22.96 16.325 -21.235 1 82.5 ? O3P FAD 700 A 1 # _model_server_stats.io_time_ms 145 _model_server_stats.parse_time_ms 83 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 53 #