data_3AEB
#
_model_server_result.job_id            C6I10pS8wG-rIFGjNOCZMA 
_model_server_result.datetime_utc      '2024-11-05 04:51:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3aeb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1305}' 
#
_entry.id    3AEB 
#
_exptl.entry_id    3AEB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          10 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3AEB 
_cell.length_a            71.708 
_cell.length_b            84.255 
_cell.length_c            294.707 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3AEB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      10 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NE2 HIS 57 A HIS 57 1_555 E C8M FAD . A FAD 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? 
metalc ? metalc1 B SG CYS 65 B CYS 65 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? 
metalc ? metalc2 B SG CYS 70 B CYS 70 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
metalc ? metalc3 B SG CYS 73 B CYS 73 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc4 B SG CYS 85 B CYS 85 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc5 B SG CYS 158 B CYS 158 1_555 I FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc6 B SG CYS 161 B CYS 161 1_555 I FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc7 B SG CYS 164 B CYS 164 1_555 I FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc8 B SG CYS 168 B CYS 168 1_555 H FE4 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? 
metalc ? metalc9 B SG CYS 215 B CYS 215 1_555 H FE1 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? 
metalc ? metalc10 B SG CYS 221 B CYS 221 1_555 H FE3 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc11 B SG CYS 225 B CYS 225 1_555 I FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc12 C NE2 HIS 98 C HIS 101 1_555 J FE HEM . C HEM 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
metalc ? metalc13 J FE HEM . C HEM 1305 1_555 D NE2 HIS 46 D HIS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 391 n n 
CHA C4D HEM doub 392 n n 
CHA HHA HEM sing 393 n n 
CHB C4A HEM sing 394 n n 
CHB C1B HEM doub 395 n n 
CHB HHB HEM sing 396 n n 
CHC C4B HEM sing 397 n n 
CHC C1C HEM doub 398 n n 
CHC HHC HEM sing 399 n n 
CHD C4C HEM doub 400 n n 
CHD C1D HEM sing 401 n n 
CHD HHD HEM sing 402 n n 
C1A C2A HEM doub 403 n y 
C1A NA HEM sing 404 n y 
C2A C3A HEM sing 405 n y 
C2A CAA HEM sing 406 n n 
C3A C4A HEM doub 407 n y 
C3A CMA HEM sing 408 n n 
C4A NA HEM sing 409 n y 
CMA HMA HEM sing 410 n n 
CMA HMAA HEM sing 411 n n 
CMA HMAB HEM sing 412 n n 
CAA CBA HEM sing 413 n n 
CAA HAA HEM sing 414 n n 
CAA HAAA HEM sing 415 n n 
CBA CGA HEM sing 416 n n 
CBA HBA HEM sing 417 n n 
CBA HBAA HEM sing 418 n n 
CGA O1A HEM doub 419 n n 
CGA O2A HEM sing 420 n n 
C1B C2B HEM sing 421 n n 
C1B NB HEM sing 422 n n 
C2B C3B HEM doub 423 n n 
C2B CMB HEM sing 424 n n 
C3B C4B HEM sing 425 n n 
C3B CAB HEM sing 426 n n 
C4B NB HEM doub 427 n n 
CMB HMB HEM sing 428 n n 
CMB HMBA HEM sing 429 n n 
CMB HMBB HEM sing 430 n n 
CAB CBB HEM doub 431 n n 
CAB HAB HEM sing 432 n n 
CBB HBB HEM sing 433 n n 
CBB HBBA HEM sing 434 n n 
C1C C2C HEM sing 435 n y 
C1C NC HEM sing 436 n y 
C2C C3C HEM doub 437 n y 
C2C CMC HEM sing 438 n n 
C3C C4C HEM sing 439 n y 
C3C CAC HEM sing 440 n n 
C4C NC HEM sing 441 n y 
CMC HMC HEM sing 442 n n 
CMC HMCA HEM sing 443 n n 
CMC HMCB HEM sing 444 n n 
CAC CBC HEM doub 445 n n 
CAC HAC HEM sing 446 n n 
CBC HBC HEM sing 447 n n 
CBC HBCA HEM sing 448 n n 
C1D C2D HEM sing 449 n n 
C1D ND HEM doub 450 n n 
C2D C3D HEM doub 451 n n 
C2D CMD HEM sing 452 n n 
C3D C4D HEM sing 453 n n 
C3D CAD HEM sing 454 n n 
C4D ND HEM sing 455 n n 
CMD HMD HEM sing 456 n n 
CMD HMDA HEM sing 457 n n 
CMD HMDB HEM sing 458 n n 
CAD CBD HEM sing 459 n n 
CAD HAD HEM sing 460 n n 
CAD HADA HEM sing 461 n n 
CBD CGD HEM sing 462 n n 
CBD HBD HEM sing 463 n n 
CBD HBDA HEM sing 464 n n 
CGD O1D HEM doub 465 n n 
CGD O2D HEM sing 466 n n 
O2A H2A HEM sing 467 n n 
O2D H2D HEM sing 468 n n 
FE NA HEM sing 469 n n 
FE NB HEM sing 470 n n 
FE NC HEM sing 471 n n 
FE ND HEM sing 472 n n 
#
_atom_sites.entry_id                     3AEB 
_atom_sites.fract_transf_matrix[1][1]    0.013945 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011869 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003393 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 FAD A 1 700 700 FAD FAD . 
F 6 MLI A 1 701 701 MLI MLI . 
G 7 FES B 1 302 302 FES FES . 
H 8 F3S B 1 304 304 F3S F3S . 
I 9 SF4 B 1 303 303 SF4 SF4 . 
J 10 HEM C 1 1305 1305 HEM HEM . 
K 11 F7A C 1 1201 1201 F7A F7A . 
L 12 EPH D 1 1306 1306 EPH EPH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . J 10 -33.696 -27.231 65.086 1 57.24 ? CHA HEM 1305 C 1 
HETATM 2 C CHB HEM . . . J 10 -37.686 -24.602 65.853 1 57.72 ? CHB HEM 1305 C 1 
HETATM 3 C CHC HEM . . . J 10 -37.659 -25.891 70.526 1 57.26 ? CHC HEM 1305 C 1 
HETATM 4 C CHD HEM . . . J 10 -34.2 -29.17 69.548 1 56.95 ? CHD HEM 1305 C 1 
HETATM 5 C C1A HEM . . . J 10 -34.791 -26.428 64.874 1 57.44 ? C1A HEM 1305 C 1 
HETATM 6 C C2A HEM . . . J 10 -35.213 -25.873 63.605 1 58.04 ? C2A HEM 1305 C 1 
HETATM 7 C C3A HEM . . . J 10 -36.317 -25.147 63.816 1 57.82 ? C3A HEM 1305 C 1 
HETATM 8 C C4A HEM . . . J 10 -36.626 -25.217 65.229 1 57.58 ? C4A HEM 1305 C 1 
HETATM 9 C CMA HEM . . . J 10 -37.137 -24.362 62.764 1 57.77 ? CMA HEM 1305 C 1 
HETATM 10 C CAA HEM . . . J 10 -34.504 -26.107 62.251 1 58.93 ? CAA HEM 1305 C 1 
HETATM 11 C CBA HEM . . . J 10 -33.428 -25.054 62.029 1 59.91 ? CBA HEM 1305 C 1 
HETATM 12 C CGA HEM . . . J 10 -32.765 -25.314 60.702 1 60.44 ? CGA HEM 1305 C 1 
HETATM 13 O O1A HEM . . . J 10 -31.558 -25.679 60.704 1 60.86 ? O1A HEM 1305 C 1 
HETATM 14 O O2A HEM . . . J 10 -33.445 -25.157 59.65 1 60.51 ? O2A HEM 1305 C 1 
HETATM 15 C C1B HEM . . . J 10 -37.978 -24.644 67.197 1 57.5 ? C1B HEM 1305 C 1 
HETATM 16 C C2B HEM . . . J 10 -38.931 -23.798 67.889 1 57.49 ? C2B HEM 1305 C 1 
HETATM 17 C C3B HEM . . . J 10 -38.923 -24.153 69.182 1 57.58 ? C3B HEM 1305 C 1 
HETATM 18 C C4B HEM . . . J 10 -37.969 -25.237 69.352 1 57.39 ? C4B HEM 1305 C 1 
HETATM 19 C CMB HEM . . . J 10 -39.793 -22.691 67.231 1 57.03 ? CMB HEM 1305 C 1 
HETATM 20 C CAB HEM . . . J 10 -39.786 -23.53 70.301 1 57.64 ? CAB HEM 1305 C 1 
HETATM 21 C CBB HEM . . . J 10 -41.048 -23.942 70.447 1 57.8 ? CBB HEM 1305 C 1 
HETATM 22 C C1C HEM . . . J 10 -36.78 -26.95 70.659 1 57.33 ? C1C HEM 1305 C 1 
HETATM 23 C C2C HEM . . . J 10 -36.624 -27.809 71.823 1 57.33 ? C2C HEM 1305 C 1 
HETATM 24 C C3C HEM . . . J 10 -35.669 -28.708 71.547 1 57.35 ? C3C HEM 1305 C 1 
HETATM 25 C C4C HEM . . . J 10 -35.184 -28.457 70.202 1 57.23 ? C4C HEM 1305 C 1 
HETATM 26 C CMC HEM . . . J 10 -37.417 -27.701 73.147 1 57.17 ? CMC HEM 1305 C 1 
HETATM 27 C CAC HEM . . . J 10 -35.165 -29.829 72.484 1 57.41 ? CAC HEM 1305 C 1 
HETATM 28 C CBC HEM . . . J 10 -35.526 -31.096 72.251 1 57.66 ? CBC HEM 1305 C 1 
HETATM 29 C C1D HEM . . . J 10 -33.696 -28.935 68.287 1 56.73 ? C1D HEM 1305 C 1 
HETATM 30 C C2D HEM . . . J 10 -32.562 -29.611 67.693 1 56.84 ? C2D HEM 1305 C 1 
HETATM 31 C C3D HEM . . . J 10 -32.405 -28.998 66.296 1 56.91 ? C3D HEM 1305 C 1 
HETATM 32 C C4D HEM . . . J 10 -33.462 -28.021 66.188 1 56.99 ? C4D HEM 1305 C 1 
HETATM 33 C CMD HEM . . . J 10 -31.685 -30.718 68.319 1 56.73 ? CMD HEM 1305 C 1 
HETATM 34 C CAD HEM . . . J 10 -31.348 -29.349 65.226 1 57 ? CAD HEM 1305 C 1 
HETATM 35 C CBD HEM . . . J 10 -30.212 -28.333 65.262 1 57.31 ? CBD HEM 1305 C 1 
HETATM 36 C CGD HEM . . . J 10 -29.731 -28.033 63.865 1 57.93 ? CGD HEM 1305 C 1 
HETATM 37 O O1D HEM . . . J 10 -29.799 -28.929 62.982 1 58.09 ? O1D HEM 1305 C 1 
HETATM 38 O O2D HEM . . . J 10 -29.263 -26.888 63.628 1 58.39 ? O2D HEM 1305 C 1 
HETATM 39 N NA HEM . . . J 10 -35.679 -26.011 65.842 1 57.19 ? NA HEM 1305 C 1 
HETATM 40 N NB HEM . . . J 10 -37.408 -25.504 68.118 1 57.3 ? NB HEM 1305 C 1 
HETATM 41 N NC HEM . . . J 10 -35.889 -27.384 69.691 1 57.15 ? NC HEM 1305 C 1 
HETATM 42 N ND HEM . . . J 10 -34.191 -28.01 67.374 1 56.93 ? ND HEM 1305 C 1 
HETATM 43 FE FE HEM . . . J 10 -35.8 -26.718 67.758 1 56.7 ? FE HEM 1305 C 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#