data_3AEB
#
_model_server_result.job_id            pl-1isq9jaik1lFUNbTm-g 
_model_server_result.datetime_utc      '2024-12-28 08:35:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3aeb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":1306}' 
#
_entry.id    3AEB 
#
_exptl.entry_id    3AEB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              709.933 
_entity.id                          12 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3AEB 
_cell.length_a            71.708 
_cell.length_b            84.255 
_cell.length_c            294.707 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3AEB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      12 
_struct_asym.id                             L 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NE2 HIS 57 A HIS 57 1_555 E C8M FAD . A FAD 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? 
metalc ? metalc1 B SG CYS 65 B CYS 65 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? 
metalc ? metalc2 B SG CYS 70 B CYS 70 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
metalc ? metalc3 B SG CYS 73 B CYS 73 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc4 B SG CYS 85 B CYS 85 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc5 B SG CYS 158 B CYS 158 1_555 I FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc6 B SG CYS 161 B CYS 161 1_555 I FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc7 B SG CYS 164 B CYS 164 1_555 I FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc8 B SG CYS 168 B CYS 168 1_555 H FE4 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? 
metalc ? metalc9 B SG CYS 215 B CYS 215 1_555 H FE1 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? 
metalc ? metalc10 B SG CYS 221 B CYS 221 1_555 H FE3 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc11 B SG CYS 225 B CYS 225 1_555 I FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc12 C NE2 HIS 98 C HIS 101 1_555 J FE HEM . C HEM 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
metalc ? metalc13 J FE HEM . C HEM 1305 1_555 D NE2 HIS 46 D HIS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? 
#
_chem_comp.formula           'C39 H68 N O8 P' 
_chem_comp.formula_weight    709.933 
_chem_comp.id                EPH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 EPH sing 83 n n 
C1 O2 EPH sing 84 n n 
C1 H11 EPH sing 85 n n 
C1 H12A EPH sing 86 n n 
C2 C37 EPH sing 87 n n 
C2 O1 EPH sing 88 n n 
C2 H2 EPH sing 89 n n 
C4 O2 EPH sing 90 n n 
C4 O4 EPH doub 91 n n 
C4 C18 EPH sing 92 n n 
C18 C19 EPH sing 93 n n 
C18 H181 EPH sing 94 n n 
C18 H182 EPH sing 95 n n 
C19 C20 EPH sing 96 n n 
C19 H191 EPH sing 97 n n 
C19 H192 EPH sing 98 n n 
C20 C21 EPH sing 99 n n 
C20 H201 EPH sing 100 n n 
C20 H202 EPH sing 101 n n 
C21 C22 EPH sing 102 n n 
C21 H211 EPH sing 103 n n 
C21 H212 EPH sing 104 n n 
C22 C23 EPH sing 105 n n 
C22 H221 EPH sing 106 n n 
C22 H222 EPH sing 107 n n 
C23 C24 EPH sing 108 n n 
C23 H231 EPH sing 109 n n 
C23 H232 EPH sing 110 n n 
C24 C25 EPH doub 111 e n 
C24 H24 EPH sing 112 n n 
C25 C26 EPH sing 113 n n 
C25 H25 EPH sing 114 n n 
C26 C27 EPH sing 115 n n 
C26 H261 EPH sing 116 n n 
C26 H262 EPH sing 117 n n 
C27 C28 EPH sing 118 n n 
C27 H271 EPH sing 119 n n 
C27 H272 EPH sing 120 n n 
C28 C29 EPH doub 121 e n 
C28 H28 EPH sing 122 n n 
C29 C30 EPH sing 123 n n 
C29 H29 EPH sing 124 n n 
C30 C31 EPH sing 125 n n 
C30 H301 EPH sing 126 n n 
C30 H302 EPH sing 127 n n 
C31 C32 EPH sing 128 n n 
C31 H311 EPH sing 129 n n 
C31 H312 EPH sing 130 n n 
C32 C33 EPH doub 131 e n 
C32 H32 EPH sing 132 n n 
C33 C34 EPH sing 133 n n 
C33 H33 EPH sing 134 n n 
C34 H341 EPH sing 135 n n 
C34 H342 EPH sing 136 n n 
C34 H343 EPH sing 137 n n 
C37 O5 EPH sing 138 n n 
C37 H371 EPH sing 139 n n 
C37 H372 EPH sing 140 n n 
O5 P1 EPH sing 141 n n 
C3 O1 EPH sing 142 n n 
C3 O3 EPH doub 143 n n 
C3 C5 EPH sing 144 n n 
C5 C6 EPH sing 145 n n 
C5 H51 EPH sing 146 n n 
C5 H52 EPH sing 147 n n 
C6 C7 EPH sing 148 n n 
C6 H61 EPH sing 149 n n 
C6 H62 EPH sing 150 n n 
C7 C8 EPH sing 151 n n 
C7 H71 EPH sing 152 n n 
C7 H72 EPH sing 153 n n 
C8 C9 EPH sing 154 n n 
C8 H81 EPH sing 155 n n 
C8 H82 EPH sing 156 n n 
C9 C10 EPH sing 157 n n 
C9 H91 EPH sing 158 n n 
C9 H92 EPH sing 159 n n 
C10 C11 EPH sing 160 n n 
C10 H101 EPH sing 161 n n 
C10 H102 EPH sing 162 n n 
C11 C12 EPH sing 163 n n 
C11 H111 EPH sing 164 n n 
C11 H112 EPH sing 165 n n 
C12 C13 EPH doub 166 e n 
C12 H12 EPH sing 167 n n 
C13 C14 EPH sing 168 n n 
C13 H13 EPH sing 169 n n 
C14 C15 EPH sing 170 n n 
C14 H141 EPH sing 171 n n 
C14 H142 EPH sing 172 n n 
C15 C16 EPH doub 173 e n 
C15 H15 EPH sing 174 n n 
C16 C17 EPH sing 175 n n 
C16 H16 EPH sing 176 n n 
C17 C35 EPH sing 177 n n 
C17 H171 EPH sing 178 n n 
C17 H172 EPH sing 179 n n 
C35 C36 EPH sing 180 n n 
C35 H351 EPH sing 181 n n 
C35 H352 EPH sing 182 n n 
C36 H361 EPH sing 183 n n 
C36 H362 EPH sing 184 n n 
C36 H363 EPH sing 185 n n 
P1 O6 EPH sing 186 n n 
P1 O7 EPH doub 187 n n 
P1 O8 EPH sing 188 n n 
O6 HO6 EPH sing 189 n n 
O8 C38 EPH sing 190 n n 
C38 C39 EPH sing 191 n n 
C38 H381 EPH sing 192 n n 
C38 H382 EPH sing 193 n n 
C39 N1 EPH sing 194 n n 
C39 H391 EPH sing 195 n n 
C39 H392 EPH sing 196 n n 
N1 HN11 EPH sing 197 n n 
N1 HN12 EPH sing 198 n n 
#
_atom_sites.entry_id                     3AEB 
_atom_sites.fract_transf_matrix[1][1]    0.013945 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011869 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003393 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 FAD A 1 700 700 FAD FAD . 
F 6 MLI A 1 701 701 MLI MLI . 
G 7 FES B 1 302 302 FES FES . 
H 8 F3S B 1 304 304 F3S F3S . 
I 9 SF4 B 1 303 303 SF4 SF4 . 
J 10 HEM C 1 1305 1305 HEM HEM . 
K 11 F7A C 1 1201 1201 F7A F7A . 
L 12 EPH D 1 1306 1306 EPH EPH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EPH . . . L 12 -45.386 -21.231 83.909 1 139.55 ? C1 EPH 1306 D 1 
HETATM 2 C C2 EPH . . . L 12 -46.453 -21.19 84.951 1 140.01 ? C2 EPH 1306 D 1 
HETATM 3 C C4 EPH . . . L 12 -43.573 -21.115 85.399 1 138.06 ? C4 EPH 1306 D 1 
HETATM 4 O O2 EPH . . . L 12 -44.397 -21.944 84.59 1 138.58 ? O2 EPH 1306 D 1 
HETATM 5 O O4 EPH . . . L 12 -43.808 -21.01 86.573 1 137.99 ? O4 EPH 1306 D 1 
HETATM 6 C C18 EPH . . . L 12 -42.464 -20.392 84.711 1 137.6 ? C18 EPH 1306 D 1 
HETATM 7 C C19 EPH . . . L 12 -42.568 -20.809 83.253 1 137.02 ? C19 EPH 1306 D 1 
HETATM 8 C C20 EPH . . . L 12 -41.181 -21.077 82.707 1 136.64 ? C20 EPH 1306 D 1 
HETATM 9 C C21 EPH . . . L 12 -41.196 -21.824 81.392 1 136.19 ? C21 EPH 1306 D 1 
HETATM 10 C C22 EPH . . . L 12 -39.778 -22.249 81.085 1 135.95 ? C22 EPH 1306 D 1 
HETATM 11 C C23 EPH . . . L 12 -39.738 -23.704 80.668 1 135.71 ? C23 EPH 1306 D 1 
HETATM 12 C C24 EPH . . . L 12 -38.652 -24.453 81.414 1 135.51 ? C24 EPH 1306 D 1 
HETATM 13 C C25 EPH . . . L 12 -39.091 -25.894 81.587 1 135.38 ? C25 EPH 1306 D 1 
HETATM 14 C C26 EPH . . . L 12 -37.911 -26.832 81.465 1 135.38 ? C26 EPH 1306 D 1 
HETATM 15 C C27 EPH . . . L 12 -37.782 -27.706 82.698 1 135.19 ? C27 EPH 1306 D 1 
HETATM 16 C C28 EPH . . . L 12 -38.806 -28.835 82.693 1 134.85 ? C28 EPH 1306 D 1 
HETATM 17 C C29 EPH . . . L 12 -38.271 -30.097 82.037 1 134.52 ? C29 EPH 1306 D 1 
HETATM 18 C C30 EPH . . . L 12 -39.294 -30.666 81.071 1 134.28 ? C30 EPH 1306 D 1 
HETATM 19 C C31 EPH . . . L 12 -38.652 -31.677 80.158 1 134.09 ? C31 EPH 1306 D 1 
HETATM 20 C C37 EPH . . . L 12 -47.775 -21.052 84.254 1 140.09 ? C37 EPH 1306 D 1 
HETATM 21 O O5 EPH . . . L 12 -48.728 -21.213 85.276 1 140.24 ? O5 EPH 1306 D 1 
HETATM 22 C C3 EPH . . . L 12 -47.054 -23.388 84.583 1 139.56 ? C3 EPH 1306 D 1 
HETATM 23 O O1 EPH . . . L 12 -46.436 -22.475 85.508 1 140.02 ? O1 EPH 1306 D 1 
HETATM 24 O O3 EPH . . . L 12 -48.244 -23.295 84.43 1 139.52 ? O3 EPH 1306 D 1 
HETATM 25 C C5 EPH . . . L 12 -46.254 -24.442 83.859 1 138.92 ? C5 EPH 1306 D 1 
HETATM 26 C C6 EPH . . . L 12 -46.461 -24.453 82.353 1 138.16 ? C6 EPH 1306 D 1 
HETATM 27 C C7 EPH . . . L 12 -45.106 -24.499 81.664 1 137.51 ? C7 EPH 1306 D 1 
HETATM 28 C C8 EPH . . . L 12 -45.1 -25.343 80.399 1 136.94 ? C8 EPH 1306 D 1 
HETATM 29 C C9 EPH . . . L 12 -43.828 -25.149 79.58 1 136.51 ? C9 EPH 1306 D 1 
HETATM 30 C C10 EPH . . . L 12 -43.06 -26.454 79.39 1 136.2 ? C10 EPH 1306 D 1 
HETATM 31 C C11 EPH . . . L 12 -41.861 -26.285 78.464 1 135.83 ? C11 EPH 1306 D 1 
HETATM 32 C C12 EPH . . . L 12 -40.856 -27.427 78.524 1 135.55 ? C12 EPH 1306 D 1 
HETATM 33 C C13 EPH . . . L 12 -39.607 -27.069 77.731 1 135.41 ? C13 EPH 1306 D 1 
HETATM 34 C C14 EPH . . . L 12 -38.502 -28.099 77.909 1 135.35 ? C14 EPH 1306 D 1 
HETATM 35 C C15 EPH . . . L 12 -37.105 -27.516 77.769 1 134.93 ? C15 EPH 1306 D 1 
HETATM 36 C C16 EPH . . . L 12 -36.137 -28.311 78.63 1 134.62 ? C16 EPH 1306 D 1 
HETATM 37 C C17 EPH . . . L 12 -34.779 -27.674 78.759 1 134.28 ? C17 EPH 1306 D 1 
HETATM 38 P P1 EPH . . . L 12 -48.223 -21.663 86.704 1 140.3 ? P1 EPH 1306 D 1 
HETATM 39 O O6 EPH . . . L 12 -46.818 -20.999 87.191 1 140.17 ? O6 EPH 1306 D 1 
HETATM 40 O O7 EPH . . . L 12 -48.235 -23.221 86.728 1 140.37 ? O7 EPH 1306 D 1 
HETATM 41 O O8 EPH . . . L 12 -49.383 -21.026 87.577 1 140.37 ? O8 EPH 1306 D 1 
HETATM 42 C C38 EPH . . . L 12 -50.409 -20.366 86.842 1 140.31 ? C38 EPH 1306 D 1 
HETATM 43 C C39 EPH . . . L 12 -51.046 -21.451 85.995 1 140.3 ? C39 EPH 1306 D 1 
HETATM 44 N N1 EPH . . . L 12 -50.453 -22.701 86.421 1 140.28 ? N1 EPH 1306 D 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           44 
#